Published in Genome Res on July 01, 2002
Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell (2004) 6.81
Rapid recent growth and divergence of rice nuclear genomes. Proc Natl Acad Sci U S A (2004) 5.35
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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet (2011) 4.65
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Evolution of DNA sequence nonhomologies among maize inbreds. Plant Cell (2005) 3.17
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The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Res (2005) 2.23
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Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates. Genome Res (2005) 1.68
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Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome. Genome Biol (2004) 1.50
Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Genetics (2012) 1.49
Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice. Proc Natl Acad Sci U S A (2005) 1.48
The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms. BMC Evol Biol (2015) 1.41
Pericentromeric regions of soybean (Glycine max L. Merr.) chromosomes consist of retroelements and tandemly repeated DNA and are structurally and evolutionarily labile. Genetics (2005) 1.38
Patching gaps in plant genomes results in gene movement and erosion of colinearity. Genome Res (2010) 1.36
Comprehensive molecular cytogenetic analysis of sorghum genome architecture: distribution of euchromatin, heterochromatin, genes and recombination in comparison to rice. Genetics (2005) 1.36
Chromosome-level homeology in paleopolyploid soybean (Glycine max) revealed through integration of genetic and chromosome maps. Genetics (2005) 1.33
Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons? Genome Res (2009) 1.33
Genome size reduction can trigger rapid phenotypic evolution in invasive plants. Ann Bot (2010) 1.31
S locus genes and the evolution of self-fertility in Arabidopsis thaliana. Plant Cell (2007) 1.31
Types and rates of sequence evolution at the high-molecular-weight glutenin locus in hexaploid wheat and its ancestral genomes. Genetics (2006) 1.31
Homeologous recombination plays a major role in chromosome rearrangements that occur during meiosis of Brassica napus haploids. Genetics (2006) 1.31
Incongruent patterns of local and global genome size evolution in cotton. Genome Res (2004) 1.30
Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS Genet (2009) 1.29
Deletion polymorphism in wheat chromosome regions with contrasting recombination rates. Genetics (2004) 1.28
Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae. Genome Biol (2004) 1.27
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The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol (2013) 1.26
Transposable element distribution, abundance and role in genome size variation in the genus Oryza. BMC Evol Biol (2007) 1.25
Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat. Genetics (2008) 1.24
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Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nat Commun (2013) 1.22
Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations. Mol Genet Genomics (2005) 1.21
Transposed genes in Arabidopsis are often associated with flanking repeats. PLoS Genet (2010) 1.19
Hybridization and genome size evolution: timing and magnitude of nuclear DNA content increases in Helianthus homoploid hybrid species. New Phytol (2005) 1.19
Unlocking wheat genetic resources for the molecular identification of previously undescribed functional alleles at the Pm3 resistance locus. Proc Natl Acad Sci U S A (2009) 1.18
SoyTEdb: a comprehensive database of transposable elements in the soybean genome. BMC Genomics (2010) 1.18
Retrotransposon accumulation and satellite amplification mediated by segmental duplication facilitate centromere expansion in rice. Genome Res (2005) 1.18
Sequencing of the Triticum monococcum hardness locus reveals good microcolinearity with rice. Mol Genet Genomics (2004) 1.17
Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants. Proc Natl Acad Sci U S A (2009) 1.17
Transposon variants and their effects on gene expression in Arabidopsis. PLoS Genet (2013) 1.17
Bifurcation and enhancement of autonomous-nonautonomous retrotransposon partnership through LTR Swapping in soybean. Plant Cell (2010) 1.15
Ancient haplotypes resulting from extensive molecular rearrangements in the wheat A genome have been maintained in species of three different ploidy levels. Genome Res (2005) 1.15
Coevolution between a family of parasite virulence effectors and a class of LINE-1 retrotransposons. PLoS One (2009) 1.15
An alternative polyadenylation mechanism coopted to the Arabidopsis RPP7 gene through intronic retrotransposon domestication. Proc Natl Acad Sci U S A (2013) 1.15
The evolution of genome size in ants. BMC Evol Biol (2008) 1.14
Gene space dynamics during the evolution of Aegilops tauschii, Brachypodium distachyon, Oryza sativa, and Sorghum bicolor genomes. Mol Biol Evol (2011) 1.14
Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement. Genetics (2006) 1.14
Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata. Proc Natl Acad Sci U S A (2008) 1.13
Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes. Nucleic Acids Res (2009) 1.12
Dynamic evolution at pericentromeres. Genome Res (2006) 1.12
DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes. Genetics (2005) 1.12
A large rearrangement involving genes and low-copy DNA interrupts the microcollinearity between rice and barley at the Rph7 locus. Genetics (2003) 1.12
Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome. Genome Res (2008) 1.12
Analysis of intraspecies diversity in wheat and barley genomes identifies breakpoints of ancient haplotypes and provides insight into the structure of diploid and hexaploid triticeae gene pools. Plant Physiol (2008) 1.11
Retrotranspositions in orthologous regions of closely related grass species. BMC Evol Biol (2006) 1.11
Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris. Plant Cell (2010) 1.09
Centromeric retrotransposon lineages predate the maize/rice divergence and differ in abundance and activity. Mol Genet Genomics (2007) 1.08
Structural divergence of chromosomal segments that arose from successive duplication events in the Arabidopsis genome. Nucleic Acids Res (2003) 1.08
Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex. Plant Physiol (2002) 1.08
LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss. BMC Genomics (2007) 1.07
Detection of transposable elements by their compositional bias. BMC Bioinformatics (2004) 1.07
The role of double-stranded break repair in the creation of phenotypic diversity at cereal VRN1 loci. Genetics (2007) 1.06
Genetic and epigenetic dynamics of a retrotransposon after allopolyploidization of wheat. Genetics (2010) 1.01
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The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution. Heredity (Edinb) (2013) 0.98
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Isolation and bioinformatic analysis of a novel transposable element, ISCbe4, from the hyperthermophilic bacterium, Caldicellulosiruptor bescii. J Ind Microbiol Biotechnol (2013) 0.85
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Fine mapping of the Pc locus of Sorghum bicolor, a gene controlling the reaction to a fungal pathogen and its host-selective toxin. Theor Appl Genet (2007) 0.83
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Fine-mapping and identification of a candidate gene underlying the d2 dwarfing phenotype in pearl millet, Cenchrus americanus (L.) Morrone. G3 (Bethesda) (2013) 0.83
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Isolation and diversity analysis of resistance gene homologues from switchgrass. G3 (Bethesda) (2013) 0.78
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