Highly coordinated gene regulation in mouse skeletal muscle regeneration.

PubWeight™: 2.17‹?› | Rank: Top 2%

🔗 View Article (PMID 12477723)

Published in J Biol Chem on December 10, 2002

Authors

Zhen Yan1, Sangdun Choi, Xuebin Liu, Mei Zhang, Jeoffrey J Schageman, Sun Young Lee, Rebecca Hart, Ling Lin, Frederick A Thurmond, R Sanders Williams

Author Affiliations

1: Division of Cardiology, Department of Medicine, Duke University Medical Center, Durham, North Carolina 27710, USA. zhen.yan@duke.edu

Articles citing this

Regulatory interactions between muscle and the immune system during muscle regeneration. Am J Physiol Regul Integr Comp Physiol (2010) 3.44

microRNA-1 and microRNA-206 regulate skeletal muscle satellite cell proliferation and differentiation by repressing Pax7. J Cell Biol (2010) 2.57

Global and gene-specific analyses show distinct roles for Myod and Myog at a common set of promoters. EMBO J (2006) 2.38

Muscle regeneration in the prolonged absence of myostatin. Proc Natl Acad Sci U S A (2005) 1.81

TWEAK, via its receptor Fn14, is a novel regulator of mesenchymal progenitor cells and skeletal muscle regeneration. EMBO J (2006) 1.73

PGC-1alpha plays a functional role in exercise-induced mitochondrial biogenesis and angiogenesis but not fiber-type transformation in mouse skeletal muscle. Am J Physiol Cell Physiol (2009) 1.72

The H19 long noncoding RNA gives rise to microRNAs miR-675-3p and miR-675-5p to promote skeletal muscle differentiation and regeneration. Genes Dev (2014) 1.64

Id3 is a direct transcriptional target of Pax7 in quiescent satellite cells. Mol Biol Cell (2009) 1.58

Codependent activators direct myoblast-specific MyoD transcription. Dev Cell (2008) 1.52

Intracellular inactivation of thyroid hormone is a survival mechanism for muscle stem cell proliferation and lineage progression. Cell Metab (2014) 1.46

miR-26a is required for skeletal muscle differentiation and regeneration in mice. Genes Dev (2012) 1.46

Phosphatidylserine receptor BAI1 and apoptotic cells as new promoters of myoblast fusion. Nature (2013) 1.45

The FoxO3/type 2 deiodinase pathway is required for normal mouse myogenesis and muscle regeneration. J Clin Invest (2010) 1.35

The chemokine system in arteriogenesis and hind limb ischemia. J Vasc Surg (2007) 1.34

Oxidative phenotype protects myofibers from pathological insults induced by chronic heart failure in mice. Am J Pathol (2007) 1.29

JAK1-STAT1-STAT3, a key pathway promoting proliferation and preventing premature differentiation of myoblasts. J Cell Biol (2007) 1.22

Modulation of muscle regeneration, myogenesis, and adipogenesis by the Rho family guanine nucleotide exchange factor GEFT. Mol Cell Biol (2005) 1.19

Bone marrow-derived cell regulation of skeletal muscle regeneration. FASEB J (2008) 1.11

MASTR directs MyoD-dependent satellite cell differentiation during skeletal muscle regeneration. Genes Dev (2012) 1.10

Extensive mononuclear infiltration and myogenesis characterize recovery of dysferlin-null skeletal muscle from contraction-induced injuries. Am J Physiol Cell Physiol (2009) 1.10

Necdin mediates skeletal muscle regeneration by promoting myoblast survival and differentiation. J Cell Biol (2007) 1.08

Loss of the inducible Hsp70 delays the inflammatory response to skeletal muscle injury and severely impairs muscle regeneration. PLoS One (2013) 1.06

Skeletal muscle mass recovery from atrophy in IL-6 knockout mice. Acta Physiol (Oxf) (2011) 1.06

Imprinted genes that regulate early mammalian growth are coexpressed in somatic stem cells. PLoS One (2011) 1.06

Mechanisms of skeletal muscle injury and repair revealed by gene expression studies in mouse models. J Physiol (2007) 1.03

Absence of CD34 on murine skeletal muscle satellite cells marks a reversible state of activation during acute injury. PLoS One (2010) 1.03

G-CSF influences mouse skeletal muscle development and regeneration by stimulating myoblast proliferation. J Exp Med (2011) 1.02

Microgenomic analysis in skeletal muscle: expression signatures of individual fast and slow myofibers. PLoS One (2011) 1.02

Early activation of rat skeletal muscle IL-6/STAT1/STAT3 dependent gene expression in resistance exercise linked to hypertrophy. PLoS One (2013) 1.01

Temporal microRNA expression during in vitro myogenic progenitor cell proliferation and differentiation: regulation of proliferation by miR-682. Physiol Genomics (2010) 0.99

Angiotensin II inhibits satellite cell proliferation and prevents skeletal muscle regeneration. J Biol Chem (2013) 0.97

CREB is activated by muscle injury and promotes muscle regeneration. PLoS One (2011) 0.96

The methyl-CpG-binding protein CIBZ suppresses myogenic differentiation by directly inhibiting myogenin expression. Cell Res (2011) 0.95

Specific changes in the expression of imprinted genes in prostate cancer--implications for cancer progression and epigenetic regulation. Asian J Androl (2012) 0.95

MiR-351 transiently increases during muscle regeneration and promotes progenitor cell proliferation and survival upon differentiation. Physiol Genomics (2012) 0.94

E2F3 plays an essential role in cardiac development and function. Cell Cycle (2008) 0.94

Effect of nandrolone decanoate administration on recovery from bupivacaine-induced muscle injury. J Appl Physiol (1985) (2009) 0.93

Type II iodothyronine deiodinase provides intracellular 3,5,3'-triiodothyronine to normal and regenerating mouse skeletal muscle. Am J Physiol Endocrinol Metab (2011) 0.93

Bex1 knock out mice show altered skeletal muscle regeneration. Biochem Biophys Res Commun (2007) 0.92

Bone marrow side population cells are enriched for progenitors capable of myogenic differentiation. J Cell Sci (2008) 0.91

A systems-level approach to parental genomic imprinting: the imprinted gene network includes extracellular matrix genes and regulates cell cycle exit and differentiation. Genome Res (2015) 0.90

miR-186 inhibits muscle cell differentiation through myogenin regulation. J Biol Chem (2014) 0.90

MUNC, a long noncoding RNA that facilitates the function of MyoD in skeletal myogenesis. Mol Cell Biol (2014) 0.90

Arpp/Ankrd2, a member of the muscle ankyrin repeat proteins (MARPs), translocates from the I-band to the nucleus after muscle injury. Histochem Cell Biol (2007) 0.90

Transgenic overexpression of ADAM12 suppresses muscle regeneration and aggravates dystrophy in aged mdx mice. Am J Pathol (2007) 0.89

Impact of repeated bouts of eccentric exercise on myogenic gene expression. Eur J Appl Physiol (2007) 0.89

Reciprocal interaction between TRAF6 and notch signaling regulates adult myofiber regeneration upon injury. Mol Cell Biol (2012) 0.89

Oncostatin M inhibits myoblast differentiation and regulates muscle regeneration. Cell Res (2010) 0.88

MiR-214 and N-ras regulatory loop suppresses rhabdomyosarcoma cell growth and xenograft tumorigenesis. Oncotarget (2014) 0.88

Increased sphingosine-1-phosphate improves muscle regeneration in acutely injured mdx mice. Skelet Muscle (2013) 0.88

Secreted protein acidic and rich in cysteine (SPARC) in human skeletal muscle. J Histochem Cytochem (2008) 0.87

Cytoglobin modulates myogenic progenitor cell viability and muscle regeneration. Proc Natl Acad Sci U S A (2013) 0.87

Insulin-like 6 is induced by muscle injury and functions as a regenerative factor. J Biol Chem (2010) 0.86

PAX3/7 expression coincides with MyoD during chronic skeletal muscle overload. Muscle Nerve (2008) 0.86

MicroRNAs as potential target in human bone and soft tissue sarcoma therapeutics. Front Mol Biosci (2015) 0.85

Mitochondrial alterations and oxidative stress in an acute transient mouse model of muscle degeneration: implications for muscular dystrophy and related muscle pathologies. J Biol Chem (2013) 0.84

Extracellular superoxide dismutase ameliorates skeletal muscle abnormalities, cachexia, and exercise intolerance in mice with congestive heart failure. Circ Heart Fail (2014) 0.84

Fibroblast growth factor 1 induced during myogenesis by a transcription-translation coupling mechanism. Nucleic Acids Res (2009) 0.84

Enhanced skeletal muscle expression of extracellular superoxide dismutase mitigates streptozotocin-induced diabetic cardiomyopathy by reducing oxidative stress and aberrant cell signaling. Circ Heart Fail (2014) 0.83

Gli3 regulation of myogenesis is necessary for ischemia-induced angiogenesis. Circ Res (2013) 0.83

MyoD regulates p57kip2 expression by interacting with a distant cis-element and modifying a higher order chromatin structure. Nucleic Acids Res (2012) 0.82

Angiotensin type 2 receptor signaling in satellite cells potentiates skeletal muscle regeneration. J Biol Chem (2014) 0.82

Regeneration of injured skeletal muscle in heat shock transcription factor 1-null mice. Physiol Rep (2013) 0.82

Multitasking C2H2 zinc fingers link Zac DNA binding to coordinated regulation of p300-histone acetyltransferase activity. Mol Cell Biol (2006) 0.81

Angiopoietin-1 enhances skeletal muscle regeneration in mice. Am J Physiol Regul Integr Comp Physiol (2015) 0.81

In vivo Monitoring of Transcriptional Dynamics After Lower-Limb Muscle Injury Enables Quantitative Classification of Healing. Sci Rep (2015) 0.80

Loss of STAT1 in bone marrow-derived cells accelerates skeletal muscle regeneration. PLoS One (2012) 0.80

Platelet-rich plasma and skeletal muscle healing: a molecular analysis of the early phases of the regeneration process in an experimental animal model. PLoS One (2014) 0.80

Therapeutic strategies for preventing skeletal muscle fibrosis after injury. Front Pharmacol (2015) 0.80

Bone marrow-derived cells do not engraft into skeletal muscle microvasculature but promote angiogenesis after acute injury. Exp Hematol (2011) 0.80

Mest but Not MiR-335 Affects Skeletal Muscle Growth and Regeneration. PLoS One (2015) 0.79

Diet-induced obesity impairs muscle satellite cell activation and muscle repair through alterations in hepatocyte growth factor signaling. Physiol Rep (2015) 0.79

The time course effects of electroacupuncture on promoting skeletal muscle regeneration and inhibiting excessive fibrosis after contusion in rabbits. Evid Based Complement Alternat Med (2013) 0.79

Role of the cytoskeleton in muscle transcriptional responses to altered use. Physiol Genomics (2013) 0.78

A BAG3 Coding Variant in Mice Determines Susceptibility to Ischemic Limb Muscle Myopathy by Directing Autophagy. Circulation (2017) 0.78

Diminished force production and mitochondrial respiratory deficits are strain-dependent myopathies of subacute limb ischemia. J Vasc Surg (2016) 0.76

Uncovering the transcriptional circuitry in skeletal muscle regeneration. Mamm Genome (2011) 0.76

The Longissimus and Semimembranosus muscles display marked differences in their gene expression profiles in pig. PLoS One (2014) 0.76

The brain expressed x-linked gene 1 (Bex1) regulates myoblast fusion. Dev Biol (2015) 0.76

Reductions in expression of growth regulating genes in skeletal muscle with age in wild type and myostatin null mice. BMC Physiol (2014) 0.75

PDGFRα signalling promotes fibrogenic responses in collagen-producing cells in Duchenne muscular dystrophy. J Pathol (2016) 0.75

p18 inhibits reprogramming through inactivation of Cdk4/6. Sci Rep (2016) 0.75

Ulk1-mediated autophagy plays an essential role in mitochondrial remodeling and functional regeneration of skeletal muscle. Am J Physiol Cell Physiol (2017) 0.75

Articles by these authors

Recurring mutations found by sequencing an acute myeloid leukemia genome. N Engl J Med (2009) 33.09

Somatic mutations affect key pathways in lung adenocarcinoma. Nature (2008) 30.02

Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia. N Engl J Med (2013) 19.87

Genome remodelling in a basal-like breast cancer metastasis and xenograft. Nature (2010) 19.68

Characterizing the cancer genome in lung adenocarcinoma. Nature (2007) 16.48

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res (2012) 15.90

DNMT3A mutations in acute myeloid leukemia. N Engl J Med (2010) 14.07

Short sleep duration is associated with reduced leptin, elevated ghrelin, and increased body mass index. PLoS Med (2004) 11.17

The origin and evolution of mutations in acute myeloid leukemia. Cell (2012) 9.66

The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Science (2004) 6.25

TH17 cells contribute to uveitis and scleritis and are expanded by IL-2 and inhibited by IL-27/STAT1. Nat Med (2007) 5.41

Synthetic dsRNA Dicer substrates enhance RNAi potency and efficacy. Nat Biotechnol (2004) 5.40

Regulation of mitochondrial biogenesis in skeletal muscle by CaMK. Science (2002) 4.18

Narcolepsy onset is seasonal and increased following the 2009 H1N1 pandemic in China. Ann Neurol (2011) 4.09

Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet (2010) 4.06

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies. Nat Biotechnol (2006) 3.68

Narcolepsy is strongly associated with the T-cell receptor alpha locus. Nat Genet (2009) 3.33

CCL18 from tumor-associated macrophages promotes breast cancer metastasis via PITPNM3. Cancer Cell (2011) 3.31

Genomic portrait of resectable hepatocellular carcinomas: implications of RB1 and FGF19 aberrations for patient stratification. Hepatology (2014) 3.31

Post-H1N1 narcolepsy-cataplexy. Sleep (2010) 3.10

Elevated anti-streptococcal antibodies in patients with recent narcolepsy onset. Sleep (2009) 3.06

Exercise stimulates Pgc-1alpha transcription in skeletal muscle through activation of the p38 MAPK pathway. J Biol Chem (2005) 3.06

Kleine-Levin syndrome: a systematic study of 108 patients. Ann Neurol (2008) 3.03

The role of academic health science systems in the transformation of medicine. Lancet (2009) 2.98

STIM1 signalling controls store-operated calcium entry required for development and contractile function in skeletal muscle. Nat Cell Biol (2008) 2.89

Phosphorylation of FOXP3 controls regulatory T cell function and is inhibited by TNF-α in rheumatoid arthritis. Nat Med (2013) 2.85

Mapping multiple sclerosis susceptibility to the HLA-DR locus in African Americans. Am J Hum Genet (2003) 2.71

Mouse cristin/R-spondin family proteins are novel ligands for the Frizzled 8 and LRP6 receptors and activate beta-catenin-dependent gene expression. J Biol Chem (2006) 2.61

Genome-wide genetic changes during modern breeding of maize. Nat Genet (2012) 2.60

Microvesicles secreted by macrophages shuttle invasion-potentiating microRNAs into breast cancer cells. Mol Cancer (2011) 2.56

Retracted CD4+ T cell autoimmunity to hypocretin/orexin and cross-reactivity to a 2009 H1N1 influenza A epitope in narcolepsy. Sci Transl Med (2013) 2.51

NFAT5/TonEBP mutant mice define osmotic stress as a critical feature of the lymphoid microenvironment. Proc Natl Acad Sci U S A (2004) 2.42

Correlates of sleep-onset REM periods during the Multiple Sleep Latency Test in community adults. Brain (2006) 2.35

Renaming the DSCR1/Adapt78 gene family as RCAN: regulators of calcineurin. FASEB J (2007) 2.30

Cell type-specific gene expression of midbrain dopaminergic neurons reveals molecules involved in their vulnerability and protection. Hum Mol Genet (2005) 2.28

Exercise prevents maternal high-fat diet-induced hypermethylation of the Pgc-1α gene and age-dependent metabolic dysfunction in the offspring. Diabetes (2014) 2.24

Using allopurinol above the dose based on creatinine clearance is effective and safe in patients with chronic gout, including those with renal impairment. Arthritis Rheum (2011) 2.21

Giant-stroke, superelastic carbon nanotube aerogel muscles. Science (2009) 2.19

Overview of the Alliance for Cellular Signaling. Nature (2002) 2.15

Background mutations in parental cells account for most of the genetic heterogeneity of induced pluripotent stem cells. Cell Stem Cell (2012) 2.11

miR-93, miR-98, and miR-197 regulate expression of tumor suppressor gene FUS1. Mol Cancer Res (2009) 2.11

Variant between CPT1B and CHKB associated with susceptibility to narcolepsy. Nat Genet (2008) 2.09

Components of the antigen processing and presentation pathway revealed by gene expression microarray analysis following B cell antigen receptor (BCR) stimulation. BMC Bioinformatics (2006) 2.09

Reduction in asthma-related emergency department visits after implementation of a smoke-free law. J Allergy Clin Immunol (2008) 2.02

Transcriptional regulation of cardiac progenitor cell populations. Circ Res (2004) 2.01

Comparative oncogenomics identifies breast tumors enriched in functional tumor-initiating cells. Proc Natl Acad Sci U S A (2011) 2.01

Pharmacokinetics of oral methotrexate in patients with rheumatoid arthritis. Arthritis Rheum (2008) 1.99

Correlates of serum C-reactive protein (CRP)--no association with sleep duration or sleep disordered breathing. Sleep (2007) 1.88

Targeted delivery of PLK1-siRNA by ScFv suppresses Her2+ breast cancer growth and metastasis. Sci Transl Med (2012) 1.86

The role of modulatory calcineurin-interacting proteins in calcineurin signaling. Trends Cardiovasc Med (2003) 1.80

Safety and effect of adipose tissue-derived stem cell implantation in patients with critical limb ischemia: a pilot study. Circ J (2012) 1.79

Toll-like receptor signal transduction. Exp Mol Med (2007) 1.73

PGC-1alpha plays a functional role in exercise-induced mitochondrial biogenesis and angiogenesis but not fiber-type transformation in mouse skeletal muscle. Am J Physiol Cell Physiol (2009) 1.72

A novel superhydrophilic and underwater superoleophobic hydrogel-coated mesh for oil/water separation. Adv Mater (2011) 1.67

Sequencing a mouse acute promyelocytic leukemia genome reveals genetic events relevant for disease progression. J Clin Invest (2011) 1.66

Current issues for DNA microarrays: platform comparison, double linear amplification, and universal RNA reference. J Biotechnol (2004) 1.66

Common variants in P2RY11 are associated with narcolepsy. Nat Genet (2010) 1.65

Clinical and therapeutic aspects of childhood narcolepsy-cataplexy: a retrospective study of 51 children. Sleep (2010) 1.64

Multiple domains of MCIP1 contribute to inhibition of calcineurin activity. J Biol Chem (2002) 1.62

Clinical aspects of narcolepsy-cataplexy across ethnic groups. Sleep (2002) 1.59

Inhibition of the leucine-rich repeat protein LINGO-1 enhances survival, structure, and function of dopaminergic neurons in Parkinson's disease models. Proc Natl Acad Sci U S A (2007) 1.58

Targeted inhibition of calcineurin in pressure-overload cardiac hypertrophy. Preservation of systolic function. J Biol Chem (2002) 1.57

Parafibromin, product of the hyperparathyroidism-jaw tumor syndrome gene HRPT2, regulates cyclin D1/PRAD1 expression. Oncogene (2005) 1.56

Methotrexate polyglutamate concentrations are not associated with disease control in rheumatoid arthritis patients receiving long-term methotrexate therapy. Arthritis Rheum (2010) 1.56

ImmunoChip study implicates antigen presentation to T cells in narcolepsy. PLoS Genet (2013) 1.55

Reducing amyloid plaque burden via ex vivo gene delivery of an Abeta-degrading protease: a novel therapeutic approach to Alzheimer disease. PLoS Med (2007) 1.55

Effect of adiponectin overexpression on stability of preexisting plaques by inducing prolyl-4-hydroxylase expression. Circ J (2010) 1.54

KCNQ1 and KCNE1 in the IKs channel complex make state-dependent contacts in their extracellular domains. J Gen Physiol (2008) 1.52

Prospective medicine: the next health care transformation. Acad Med (2003) 1.51

Changes in integrin expression during adipocyte differentiation. Cell Metab (2005) 1.51

Mutations in DNMT1 cause autosomal dominant cerebellar ataxia, deafness and narcolepsy. Hum Mol Genet (2012) 1.48

Anti-Tribbles homolog 2 (TRIB2) autoantibodies in narcolepsy are associated with recent onset of cataplexy. Sleep (2010) 1.47

Structural and functional role of the extracellular s5-p linker in the HERG potassium channel. J Gen Physiol (2002) 1.46

Usefulness of high-frequency vascular ultrasound imaging and serum inflammatory markers to predict plaque rupture in patients with stable and unstable angina pectoris. Am J Cardiol (2007) 1.46

PathScan: a tool for discerning mutational significance in groups of putative cancer genes. Bioinformatics (2011) 1.46

Characterization of an LQT5-related mutation in KCNE1, Y81C: implications for a role of KCNE1 cytoplasmic domain in IKs channel function. Heart Rhythm (2006) 1.45

Will Nonasthmatic Eosinophilic Bronchitis Develop Into Chronic Airway Obstruction?: A Prospective, Observational Study. Chest (2015) 1.45

Autophagy in idiopathic pulmonary fibrosis. PLoS One (2012) 1.45

T cell hyperactivity in lupus as a consequence of hyperstimulatory antigen-presenting cells. J Clin Invest (2005) 1.45

Skeletal muscle adaptation in response to voluntary running in Ca2+/calmodulin-dependent protein kinase IV-deficient mice. Am J Physiol Cell Physiol (2004) 1.43

Thermal enhancement with optically activated gold nanoshells sensitizes breast cancer stem cells to radiation therapy. Sci Transl Med (2010) 1.43

Correlation of cervical carcinoma and precancerous lesions with human papillomavirus (HPV) genotypes detected with the HPV DNA chip microarray method. Cancer (2003) 1.41

Plaque volume compression ratio, a novel biomechanical index, is independently associated with ischemic cerebrovascular events. J Hypertens (2009) 1.41

p38gamma mitogen-activated protein kinase is a key regulator in skeletal muscle metabolic adaptation in mice. PLoS One (2009) 1.41

Making translation work. Science (2011) 1.40

Stimulation of P2X7 receptors elevates Ca2+ and kills retinal ganglion cells. Invest Ophthalmol Vis Sci (2005) 1.40

Hepatic perfusion disorder associated with focal liver lesions: contrast-enhanced US patterns--correlation study with contrast-enhanced CT. Radiology (2011) 1.39

A novel algorithm combining oversampling and digital lock-in amplifier of high speed and precision. Rev Sci Instrum (2011) 1.39

Analysis of the major patterns of B cell gene expression changes in response to short-term stimulation with 33 single ligands. J Immunol (2004) 1.39

Bicycle riding: impact on lower urinary tract symptoms and erectile function in healthy men. Int Neurourol J (2011) 1.39

MCIP1 overexpression suppresses left ventricular remodeling and sustains cardiac function after myocardial infarction. Circ Res (2004) 1.39

Atg16l1 is required for autophagy in intestinal epithelial cells and protection of mice from Salmonella infection. Gastroenterology (2013) 1.38

Improving the health of the community: Duke's experience with community engagement. Acad Med (2008) 1.38