Published in J Bacteriol on March 01, 2003
Ion channels enable electrical communication in bacterial communities. Nature (2015) 2.54
Stratified growth in Pseudomonas aeruginosa biofilms. Appl Environ Microbiol (2004) 2.16
Spatial patterns of DNA replication, protein synthesis, and oxygen concentration within bacterial biofilms reveal diverse physiological states. J Bacteriol (2007) 1.96
Rapid diffusion of fluorescent tracers into Staphylococcus epidermidis biofilms visualized by time lapse microscopy. Antimicrob Agents Chemother (2005) 1.76
Methane- and sulfur-metabolizing microbial communities dominate the Lost City hydrothermal field ecosystem. Appl Environ Microbiol (2006) 1.66
Redox reactions of phenazine antibiotics with ferric (hydr)oxides and molecular oxygen. Environ Sci Technol (2008) 1.58
An analogy between the evolution of drug resistance in bacterial communities and malignant tissues. Nat Rev Cancer (2011) 1.58
Real-time monitoring of quorum sensing in 3D-printed bacterial aggregates using scanning electrochemical microscopy. Proc Natl Acad Sci U S A (2014) 1.56
Pseudomonas aeruginosa-plant root interactions. Pathogenicity, biofilm formation, and root exudation. Plant Physiol (2003) 1.50
The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities. Anal Bioanal Chem (2006) 1.49
The extracellular matrix protects Pseudomonas aeruginosa biofilms by limiting the penetration of tobramycin. Environ Microbiol (2013) 1.47
Shaping the Growth Behaviour of Biofilms Initiated from Bacterial Aggregates. PLoS One (2016) 1.42
Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics. Cell Rep (2014) 1.39
Probing prokaryotic social behaviors with bacterial "lobster traps". MBio (2010) 1.39
Turing Patterning Using Gene Circuits with Gas-Induced Degradation of Quorum Sensing Molecules. PLoS One (2016) 1.39
Possible nonconductive role of Geobacter sulfurreducens pilus nanowires in biofilm formation. J Bacteriol (2006) 1.36
Liquid transport facilitated by channels in Bacillus subtilis biofilms. Proc Natl Acad Sci U S A (2012) 1.32
Spatiometabolic stratification of Shewanella oneidensis biofilms. Appl Environ Microbiol (2006) 1.31
Localized gene expression in Pseudomonas aeruginosa biofilms. Appl Environ Microbiol (2008) 1.30
A central role for carbon-overflow pathways in the modulation of bacterial cell death. PLoS Pathog (2014) 1.30
Interenzyme substrate diffusion for an enzyme cascade organized on spatially addressable DNA nanostructures. J Am Chem Soc (2012) 1.29
Analysis of the effects of chlorhexidine on oral biofilm vitality and structure based on viability profiling and an indicator of membrane integrity. Antimicrob Agents Chemother (2004) 1.28
Daptomycin rapidly penetrates a Staphylococcus epidermidis biofilm. Antimicrob Agents Chemother (2009) 1.23
The antibacterial effect of photodynamic therapy in dental plaque-derived biofilms. J Periodontal Res (2009) 1.17
Physiology of Pseudomonas aeruginosa in biofilms as revealed by transcriptome analysis. BMC Microbiol (2010) 1.16
Biofilm-related infections: bridging the gap between clinical management and fundamental aspects of recalcitrance toward antibiotics. Microbiol Mol Biol Rev (2014) 1.16
Direct visualization of spatial and temporal patterns of antimicrobial action within model oral biofilms. Appl Environ Microbiol (2008) 1.13
The mechanical world of bacteria. Cell (2015) 1.11
A quantitative test of population genetics using spatiogenetic patterns in bacterial colonies. Am Nat (2011) 1.11
The transcriptional programme of Salmonella enterica serovar Typhimurium reveals a key role for tryptophan metabolism in biofilms. BMC Genomics (2009) 1.10
Towards predictive models of the human gut microbiome. J Mol Biol (2014) 1.09
Influence of tigecycline on expression of virulence factors in biofilm-associated cells of methicillin-resistant Staphylococcus aureus. Antimicrob Agents Chemother (2009) 1.04
Correlated biofilm imaging, transport and metabolism measurements via combined nuclear magnetic resonance and confocal microscopy. ISME J (2007) 1.04
Spatial and temporal features of the growth of a bacterial species colonizing the zebrafish gut. MBio (2014) 1.04
Keto-mycolic acid-dependent pellicle formation confers tolerance to drug-sensitive Mycobacterium tuberculosis. MBio (2013) 1.03
Biofilms and Inflammation in Chronic Wounds. Adv Wound Care (New Rochelle) (2013) 1.03
Antibiotic resistance in an in vitro subgingival biofilm model. Oral Microbiol Immunol (2007) 1.03
Oxygen limitation within a bacterial aggregate. MBio (2014) 1.03
Engineered cell-cell communication via DNA messaging. J Biol Eng (2012) 0.99
Diffusion of macromolecules in model oral biofilms. Appl Environ Microbiol (2009) 0.98
Drugs that target pathogen public goods are robust against evolved drug resistance. Evol Appl (2012) 0.98
Role of Multicellular Aggregates in Biofilm Formation. MBio (2016) 0.98
Correlative time-resolved fluorescence microscopy to assess antibiotic diffusion-reaction in biofilms. Antimicrob Agents Chemother (2012) 0.97
Real-time microsensor measurement of local metabolic activities in ex vivo dental biofilms exposed to sucrose and treated with chlorhexidine. Appl Environ Microbiol (2010) 0.96
DIFFUSION IN BIOFILMS RESPIRING ON ELECTRODES. Energy Environ Sci (2012) 0.95
Determination of spatial distributions of zinc and active biomass in microbial biofilms by two-photon laser scanning microscopy. Appl Environ Microbiol (2005) 0.94
Comparison of the antibiotic activities of Daptomycin, Vancomycin, and the investigational Fluoroquinolone Delafloxacin against biofilms from Staphylococcus aureus clinical isolates. Antimicrob Agents Chemother (2014) 0.94
Targeting Enterococcus faecalis biofilms with phage therapy. Appl Environ Microbiol (2015) 0.94
Diffusion of nanoparticles in biofilms is altered by bacterial cell wall hydrophobicity. Appl Environ Microbiol (2010) 0.93
Modulation of Staphylococcus aureus Biofilm Matrix by Subinhibitory Concentrations of Clindamycin. Antimicrob Agents Chemother (2016) 0.93
Extracellular DNA impedes the transport of vancomycin in Staphylococcus epidermidis biofilms preexposed to subinhibitory concentrations of vancomycin. Antimicrob Agents Chemother (2014) 0.92
The biofilm matrix destabilizers, EDTA and DNaseI, enhance the susceptibility of nontypeable Hemophilus influenzae biofilms to treatment with ampicillin and ciprofloxacin. Microbiologyopen (2014) 0.92
Morphological optimization for access to dual oxidants in biofilms. Proc Natl Acad Sci U S A (2013) 0.92
Pediatric Cystic Fibrosis Sputum Can Be Chemically Dynamic, Anoxic, and Extremely Reduced Due to Hydrogen Sulfide Formation. MBio (2015) 0.92
Arginine deiminase in Staphylococcus epidermidis functions to augment biofilm maturation through pH homeostasis. J Bacteriol (2014) 0.92
Antimicrobial penetration and efficacy in an in vitro oral biofilm model. Antimicrob Agents Chemother (2011) 0.91
Cultivation of planktonic anaerobic ammonium oxidation (anammox) bacteria using membrane bioreactor. Microbes Environ (2013) 0.91
Poly-N-acetylglucosamine matrix polysaccharide impedes fluid convection and transport of the cationic surfactant cetylpyridinium chloride through bacterial biofilms. Appl Environ Microbiol (2008) 0.90
Low-load compression testing: a novel way of measuring biofilm thickness. Appl Environ Microbiol (2007) 0.90
Biophysical basis for the geometry of conical stromatolites. Proc Natl Acad Sci U S A (2010) 0.87
Chlorhexidine substantivity on salivary flora and plaque-like biofilm: an in situ model. PLoS One (2013) 0.87
Microscale diffusion measurements and simulation of a scaffold with a permeable strut. Int J Mol Sci (2013) 0.86
Impact of chloramination on the development of laboratory-grown biofilms fed with filter-pretreated groundwater. Microbes Environ (2012) 0.86
Novel multiscale modeling tool applied to Pseudomonas aeruginosa biofilm formation. PLoS One (2013) 0.85
Comparative effect of chlorhexidine and some mouthrinses on bacterial biofilm formation on titanium surface. Curr Microbiol (2010) 0.85
Quantifying diffusion in a biofilm of Streptococcus mutans. Antimicrob Agents Chemother (2010) 0.85
Biofilm responses to smooth flow fields and chemical gradients in novel microfluidic flow cells. Biotechnol Bioeng (2013) 0.85
Minimization of extracellular space as a driving force in prokaryote association and the origin of eukaryotes. Biol Direct (2014) 0.85
Material properties of biofilms-a review of methods for understanding permeability and mechanics. Rep Prog Phys (2015) 0.84
Physiological roles for two periplasmic nitrate reductases in Rhodobacter sphaeroides 2.4.3 (ATCC 17025). J Bacteriol (2011) 0.84
Quantification of extracellular carbonic anhydrase activity in two marine diatoms and investigation of its role. Plant Physiol (2013) 0.84
A mathematical model of quorum sensing regulated EPS production in biofilm communities. Theor Biol Med Model (2011) 0.83
Vibrio Iron Transport: Evolutionary Adaptation to Life in Multiple Environments. Microbiol Mol Biol Rev (2015) 0.83
Antimicrobial effect of diallyl sulphide on Campylobacter jejuni biofilms. J Antimicrob Chemother (2012) 0.82
Exposure to solute stress affects genome-wide expression but not the polycyclic aromatic hydrocarbon-degrading activity of Sphingomonas sp. strain LH128 in biofilms. Appl Environ Microbiol (2012) 0.82
Ratiometric imaging of extracellular pH in bacterial biofilms with C-SNARF-4. Appl Environ Microbiol (2015) 0.82
Tension, free space, and cell damage in a microfluidic wound healing assay. PLoS One (2011) 0.82
Stress relaxation analysis facilitates a quantitative approach towards antimicrobial penetration into biofilms. PLoS One (2013) 0.82
The LuxR-type regulator VpsT negatively controls the transcription of rpoS, encoding the general stress response regulator, in Vibrio cholerae biofilms. J Bacteriol (2013) 0.81
Analysis by confocal laser scanning microscopy of the MDPB bactericidal effect on S. mutans biofilm CLSM analysis of MDPB bactericidal effect on biofilm. J Appl Oral Sci (2012) 0.81
Environmental cues and genes involved in establishment of the superinfective Pf4 phage of Pseudomonas aeruginosa. Front Microbiol (2014) 0.80
Confocal laser scanning microscopy analysis of S. epidermidis biofilms exposed to farnesol, vancomycin and rifampicin. BMC Res Notes (2012) 0.80
Green synthesis of rifampicin-loaded copper nanoparticles with enhanced antimicrobial activity. J Mater Sci Mater Med (2017) 0.80
Biophysical controls on cluster dynamics and architectural differentiation of microbial biofilms in contrasting flow environments. Environ Microbiol (2013) 0.79
The evolution of antibiotic susceptibility and resistance during the formation of Escherichia coli biofilms in the absence of antibiotics. BMC Evol Biol (2013) 0.79
Variable cell morphology approach for individual-based modeling of microbial communities. Biophys J (2014) 0.79
Established Microbial Colonies Can Survive Type VI Secretion Assault. PLoS Comput Biol (2015) 0.79
Penetration kinetics of four mouthrinses into Streptococcus mutans biofilms analyzed by direct time-lapse visualization. Clin Oral Investig (2013) 0.79
Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota. Front Microbiol (2014) 0.78
Sorption and distribution of copper in unsaturated Pseudomonas putida CZ1 biofilms as determined by X-ray fluorescence microscopy. Appl Environ Microbiol (2011) 0.78
Gene Transfer Efficiency in Gonococcal Biofilms: Role of Biofilm Age, Architecture, and Pilin Antigenic Variation. J Bacteriol (2015) 0.78
Manuka honey treatment of biofilms of Pseudomonas aeruginosa results in the emergence of isolates with increased honey resistance. Ann Clin Microbiol Antimicrob (2014) 0.78
Spatiotemporal modeling of microbial metabolism. BMC Syst Biol (2016) 0.78
Application of paramagnetically tagged molecules for magnetic resonance imaging of biofilm mass transport processes. Appl Environ Microbiol (2010) 0.78
Metabolic modeling of a chronic wound biofilm consortium predicts spatial partitioning of bacterial species. BMC Syst Biol (2016) 0.78
Biofilm growth mode promotes maximum carrying capacity and community stability during product inhibition syntrophy. Front Microbiol (2014) 0.77
Entrapped Sediments as a Source of Phosphorus in Epilithic Cyanobacterial Proliferations in Low Nutrient Rivers. PLoS One (2015) 0.77
A modeling and simulation study of siderophore mediated antagonism in dual-species biofilms. Theor Biol Med Model (2009) 0.77
Global sensitivity analysis used to interpret biological experimental results. J Math Biol (2014) 0.77
Swimming cells promote a dynamic environment within biofilms. Proc Natl Acad Sci U S A (2012) 0.77
The involvement of cell-to-cell signals in the development of a bacterial biofilm. Science (1998) 19.92
Pseudomonas aeruginosa displays multiple phenotypes during development as a biofilm. J Bacteriol (2002) 6.98
Gene expression in Pseudomonas aeruginosa biofilms. Nature (2001) 6.70
Contributions of antibiotic penetration, oxygen limitation, and low metabolic activity to tolerance of Pseudomonas aeruginosa biofilms to ciprofloxacin and tobramycin. Antimicrob Agents Chemother (2003) 4.59
Biofilms, the customized microniche. J Bacteriol (1994) 4.33
Distribution of sulfate-reducing bacteria, O2, and H2S in photosynthetic biofilms determined by oligonucleotide probes and microelectrodes. Appl Environ Microbiol (1993) 3.89
Spatial physiological heterogeneity in Pseudomonas aeruginosa biofilm is determined by oxygen availability. Appl Environ Microbiol (1998) 3.72
Theoretical aspects of antibiotic diffusion into microbial biofilms. Antimicrob Agents Chemother (1996) 3.60
Effects of biofilm structures on oxygen distribution and mass transport. Biotechnol Bioeng (1994) 3.51
Biofilm formation and dispersal under the influence of the global regulator CsrA of Escherichia coli. J Bacteriol (2002) 3.41
The global carbon metabolism regulator Crc is a component of a signal transduction pathway required for biofilm development by Pseudomonas aeruginosa. J Bacteriol (2000) 3.21
Is quorum sensing a side effect of diffusion sensing? Trends Microbiol (2002) 3.18
Layered structure of bacterial aggregates produced in an upflow anaerobic sludge bed and filter reactor. Appl Environ Microbiol (1990) 2.97
Distribution of bacterial growth activity in flow-chamber biofilms. Appl Environ Microbiol (1999) 2.83
Structure and function of a nitrifying biofilm as determined by in situ hybridization and the use of microelectrodes. Appl Environ Microbiol (1996) 2.72
Direct measurement of chlorine penetration into biofilms during disinfection. Appl Environ Microbiol (1994) 2.51
Liquid flow in biofilm systems. Appl Environ Microbiol (1994) 2.23
Spatial variations in growth rate within Klebsiella pneumoniae colonies and biofilm. Biotechnol Prog (1996) 2.22
Detection and localization of syntrophic propionate-oxidizing bacteria in granular sludge by in situ hybridization using 16S rRNA-based oligonucleotide probes. Appl Environ Microbiol (1996) 2.13
Mathematical modeling of biofilm structure with a hybrid differential-discrete cellular automaton approach. Biotechnol Bioeng (1998) 2.02
In situ analysis of nitrifying biofilms as determined by in situ hybridization and the use of microelectrodes. Appl Environ Microbiol (1999) 1.84
Structural and functional dynamics of sulfate-reducing populations in bacterial biofilms Appl Environ Microbiol (1998) 1.84
A review of experimental measurements of effective diffusive permeabilities and effective diffusion coefficients in biofilms. Biotechnol Bioeng (1998) 1.80
Biofilm penetration and disinfection efficacy of alkaline hypochlorite and chlorosulfamates. J Appl Microbiol (2001) 1.78
Individual-based modelling of biofilms. Microbiology (2001) 1.75
Analyses of spatial distributions of sulfate-reducing bacteria and their activity in aerobic wastewater biofilms. Appl Environ Microbiol (1999) 1.54
Measurement of local diffusion coefficients in biofilms by microinjection and confocal microscopy. Biotechnol Bioeng (1997) 1.41
A mathematical model for quorum sensing in Pseudomonas aeruginosa. Bull Math Biol (2001) 1.31
Anaerobic glucose and serine metabolism in Staphylococcus epidermidis. J Gen Microbiol (1980) 1.10
Gene expression and protein levels of the stationary phase sigma factor, RpoS, in continuously-fed Pseudomonas aeruginosa biofilms. FEMS Microbiol Lett (2001) 1.06
A simple 2D biofilm model yields a variety of morphological features. Math Biosci (2001) 1.04
Calculation of effective diffusivities for biofilms and tissues. Biotechnol Bioeng (2002) 0.93