Published in Dev Cell on January 01, 2004
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RNA-Seq analysis to capture the transcriptome landscape of a single cell. Nat Protoc (2010) 4.35
An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis. Nucleic Acids Res (2006) 4.26
Maternal microRNAs are essential for mouse zygotic development. Genes Dev (2007) 4.16
Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo. PLoS Biol (2007) 3.53
Disruption of the mouse mTOR gene leads to early postimplantation lethality and prohibits embryonic stem cell development. Mol Cell Biol (2004) 3.20
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Dissecting Oct3/4-regulated gene networks in embryonic stem cells by expression profiling. PLoS One (2006) 2.46
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Maternal control of early mouse development. Development (2010) 2.13
The transcription factor gene Nfib is essential for both lung maturation and brain development. Mol Cell Biol (2005) 2.09
Selective degradation of transcripts during meiotic maturation of mouse oocytes. Dev Biol (2006) 1.95
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Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo. Genes Dev (2006) 1.67
Zscan4: a novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells. Dev Biol (2007) 1.63
Global gene expression analysis identifies molecular pathways distinguishing blastocyst dormancy and activation. Proc Natl Acad Sci U S A (2004) 1.52
Transcriptome profiling of human pre-implantation development. PLoS One (2009) 1.51
Validation of reference genes for quantitative RT-PCR studies in porcine oocytes and preimplantation embryos. BMC Dev Biol (2007) 1.51
High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization. Gene Expr Patterns (2005) 1.43
Dynamic and complex transcription factor binding during an inducible response in yeast. Genes Dev (2009) 1.43
Ras-MAPK signaling promotes trophectoderm formation from embryonic stem cells and mouse embryos. Nat Genet (2008) 1.39
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A novel and critical role for Oct4 as a regulator of the maternal-embryonic transition. PLoS One (2008) 1.38
Essential role of chromatin remodeling protein Bptf in early mouse embryos and embryonic stem cells. PLoS Genet (2008) 1.37
Proteome of mouse oocytes at different developmental stages. Proc Natl Acad Sci U S A (2010) 1.36
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Small RNA class transition from siRNA/piRNA to miRNA during pre-implantation mouse development. Nucleic Acids Res (2010) 1.27
Tet3 and DNA replication mediate demethylation of both the maternal and paternal genomes in mouse zygotes. Cell Stem Cell (2014) 1.25
Maternal Argonaute 2 is essential for early mouse development at the maternal-zygotic transition. Mol Biol Cell (2008) 1.25
Zfp206 regulates ES cell gene expression and differentiation. Nucleic Acids Res (2006) 1.22
Genomic characterization of Wilms' tumor suppressor 1 targets in nephron progenitor cells during kidney development. Development (2010) 1.21
Multiple facets of histone variant H2AX: a DNA double-strand-break marker with several biological functions. Nucleic Acids Res (2015) 1.19
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A role for PDGF signaling in expansion of the extra-embryonic endoderm lineage of the mouse blastocyst. Development (2010) 1.18
Dynamics of global transcriptome in bovine matured oocytes and preimplantation embryos. Proc Natl Acad Sci U S A (2006) 1.16
Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein. Genome Biol (2014) 1.15
Role of TIF1alpha as a modulator of embryonic transcription in the mouse zygote. J Cell Biol (2006) 1.15
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The PcG gene Sfmbt2 is paternally expressed in extraembryonic tissues. Gene Expr Patterns (2007) 1.14
Identification of the zebrafish maternal and paternal transcriptomes. Development (2013) 1.14
Inactivation of nuclear Wnt-beta-catenin signaling limits blastocyst competency for implantation. Development (2008) 1.14
Cdk8 is essential for preimplantation mouse development. Mol Cell Biol (2007) 1.13
The landscape of accessible chromatin in mammalian preimplantation embryos. Nature (2016) 1.13
Disruption of maternal DNA repair increases sperm-derived chromosomal aberrations. Proc Natl Acad Sci U S A (2007) 1.11
Inferring the choreography of parental genomes during fertilization from ultralarge-scale whole-transcriptome analysis. Genes Dev (2013) 1.11
Canonical Notch signaling is dispensable for early cell fate specifications in mammals. Mol Cell Biol (2005) 1.08
Genomic RNA profiling and the programme controlling preimplantation mammalian development. Mol Hum Reprod (2008) 1.07
Androgen-induced Rhox homeobox genes modulate the expression of AR-regulated genes. Mol Endocrinol (2009) 1.06
Novel importin-alpha family member Kpna7 is required for normal fertility and fecundity in the mouse. J Biol Chem (2010) 1.05
The rhox homeobox gene cluster is imprinted and selectively targeted for regulation by histone h1 and DNA methylation. Mol Cell Biol (2011) 1.05
Identification of direct thyroid hormone response genes reveals the earliest gene regulation programs during frog metamorphosis. J Biol Chem (2009) 1.05
Novel gene expression patterns along the proximo-distal axis of the mouse embryo before gastrulation. BMC Dev Biol (2007) 1.05
The maternal to zygotic transition in mammals. Mol Aspects Med (2013) 1.05
Hira-mediated H3.3 incorporation is required for DNA replication and ribosomal RNA transcription in the mouse zygote. Dev Cell (2014) 1.04
Specific gene-regulation networks during the pre-implantation development of the pig embryo as revealed by deep sequencing. BMC Genomics (2014) 1.04
Blastocysts don't go it alone. Extrinsic signals fine-tune the intrinsic developmental program of trophoblast cells. Dev Biol (2005) 1.03
Transcriptome analysis during human trophectoderm specification suggests new roles of metabolic and epigenetic genes. PLoS One (2012) 1.03
Cross-species hybridizations on a multi-species cDNA microarray to identify evolutionarily conserved genes expressed in oocytes. BMC Genomics (2006) 1.03
Global characterization of the oocyte-to-embryo transition in Caenorhabditis elegans uncovers a novel mRNA clearance mechanism. EMBO J (2014) 1.02
In vitro embryo culture in defined, sub-microliter volumes. Dev Dyn (2009) 1.01
An Oct4-Sall4-Nanog network controls developmental progression in the pre-implantation mouse embryo. Mol Syst Biol (2013) 1.01
Potential role for MATER in cytoplasmic lattice formation in murine oocytes. PLoS One (2010) 1.01
An essential role for zygotic expression in the pre-cellular Drosophila embryo. PLoS Genet (2013) 1.00
Expression patterns of Neil3 during embryonic brain development and neoplasia. BMC Neurosci (2009) 0.99
Differential expression of the circadian clock in maternal and embryonic tissues of mice. PLoS One (2010) 0.99
A role for borg5 during trophectoderm differentiation. Stem Cells (2010) 0.99
MATER protein expression and intracellular localization throughout folliculogenesis and preimplantation embryo development in the bovine. BMC Dev Biol (2006) 0.98
The xenoestrogen bisphenol A inhibits postembryonic vertebrate development by antagonizing gene regulation by thyroid hormone. Endocrinology (2009) 0.98
A genome-wide survey of maternal and embryonic transcripts during Xenopus tropicalis development. BMC Genomics (2013) 0.98
Transcriptional profiles of bovine in vivo pre-implantation development. BMC Genomics (2014) 0.97
Early embryonic lethality of mice lacking the essential protein SNEV. Mol Cell Biol (2007) 0.97
Portrait of an oocyte: our obscure origin. J Clin Invest (2010) 0.97
Codon identity regulates mRNA stability and translation efficiency during the maternal-to-zygotic transition. EMBO J (2016) 0.96
Epigenomic differentiation in mouse preimplantation nuclei of biparental, parthenote and cloned embryos. Chromosome Res (2007) 0.96
Contemporary genetic technologies and female reproduction. Hum Reprod Update (2011) 0.95
The multifunctional RNA-binding protein La is required for mouse development and for the establishment of embryonic stem cells. Mol Cell Biol (2006) 0.95
Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos. Genome Biol (2015) 0.95
Differential regulation of abundance and deadenylation of maternal transcripts during bovine oocyte maturation in vitro and in vivo. BMC Dev Biol (2007) 0.94
Transient bursts of Zscan4 expression are accompanied by the rapid derepression of heterochromatin in mouse embryonic stem cells. DNA Res (2015) 0.93
The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3' processing. EMBO J (2015) 0.93
DEAD-box protein-103 (DP103, Ddx20) is essential for early embryonic development and modulates ovarian morphology and function. Endocrinology (2008) 0.92
Identification and functional analysis of long non-coding RNAs in mouse cleavage stage embryonic development based on single cell transcriptome data. BMC Genomics (2014) 0.92
Impaired embryonic development in mice overexpressing the RNA-binding protein TIAR. PLoS One (2010) 0.92
CDC2A (CDK1)-mediated phosphorylation of MSY2 triggers maternal mRNA degradation during mouse oocyte maturation. Dev Biol (2008) 0.92
GO-Diff: mining functional differentiation between EST-based transcriptomes. BMC Bioinformatics (2006) 0.92
SSH adequacy to preimplantation mammalian development: scarce specific transcripts cloning despite irregular normalisation. BMC Genomics (2005) 0.91
DNA polymerase delta is required for early mammalian embryogenesis. PLoS One (2009) 0.91
Loss of maternal CTCF is associated with peri-implantation lethality of Ctcf null embryos. PLoS One (2012) 0.91
Nuclear localization of Prickle2 is required to establish cell polarity during early mouse embryogenesis. Dev Biol (2012) 0.91
Composition and regulation of maternal and zygotic transcriptomes reflects species-specific reproductive mode. Genome Biol (2010) 0.90
Establishment of epigenetic patterns in development. Chromosoma (2012) 0.90
Gremlin enhances the determined path to cardiomyogenesis. PLoS One (2008) 0.90
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res (2004) 9.18
Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells. Nat Cell Biol (2007) 6.69
A web-based tool for principal component and significance analysis of microarray data. Bioinformatics (2005) 3.42
Database for mRNA half-life of 19 977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells. DNA Res (2008) 3.29
AGEMAP: a gene expression database for aging in mice. PLoS Genet (2007) 3.22
Loss of imprinting of Igf2 alters intestinal maturation and tumorigenesis in mice. Science (2005) 2.72
Mouse B-type lamins are required for proper organogenesis but not by embryonic stem cells. Science (2011) 2.69
Klf4 cooperates with Oct3/4 and Sox2 to activate the Lefty1 core promoter in embryonic stem cells. Mol Cell Biol (2006) 2.59
Dissecting Oct3/4-regulated gene networks in embryonic stem cells by expression profiling. PLoS One (2006) 2.46
Zscan4 regulates telomere elongation and genomic stability in ES cells. Nature (2010) 2.46
Functional heterogeneity of embryonic stem cells revealed through translational amplification of an early endodermal transcript. PLoS Biol (2010) 2.38
Uncovering early response of gene regulatory networks in ESCs by systematic induction of transcription factors. Cell Stem Cell (2009) 2.32
Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immunoprecipitation data. BMC Genomics (2008) 2.27
Transcript copy number estimation using a mouse whole-genome oligonucleotide microarray. Genome Biol (2005) 2.18
Age-associated alteration of gene expression patterns in mouse oocytes. Hum Mol Genet (2004) 2.11
BAF250B-associated SWI/SNF chromatin-remodeling complex is required to maintain undifferentiated mouse embryonic stem cells. Stem Cells (2008) 2.02
Exhaustive search for over-represented DNA sequence motifs with CisFinder. DNA Res (2009) 1.94
Genome-wide assembly and analysis of alternative transcripts in mouse. Genome Res (2005) 1.78
Heterozygous disruption of Hic1 predisposes mice to a gender-dependent spectrum of malignant tumors. Nat Genet (2003) 1.77
Gene expression profiling of embryo-derived stem cells reveals candidate genes associated with pluripotency and lineage specificity. Genome Res (2002) 1.77
Transcriptome analysis of mouse stem cells and early embryos. PLoS Biol (2003) 1.75
Zscan4: a novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells. Dev Biol (2007) 1.63
Global gene expression profiling reveals similarities and differences among mouse pluripotent stem cells of different origins and strains. Dev Biol (2007) 1.61
In situ-synthesized novel microarray optimized for mouse stem cell and early developmental expression profiling. Genome Res (2003) 1.58
A conserved Oct4/POUV-dependent network links adhesion and migration to progenitor maintenance. Curr Biol (2013) 1.54
Defining a developmental path to neural fate by global expression profiling of mouse embryonic stem cells and adult neural stem/progenitor cells. Stem Cells (2005) 1.53
Global gene expression analysis identifies molecular pathways distinguishing blastocyst dormancy and activation. Proc Natl Acad Sci U S A (2004) 1.52
Top3β is an RNA topoisomerase that works with fragile X syndrome protein to promote synapse formation. Nat Neurosci (2013) 1.46
An in situ hybridization-based screen for heterogeneously expressed genes in mouse ES cells. Gene Expr Patterns (2007) 1.44
Identification of target genes and a unique cis element regulated by IRF-8 in developing macrophages. Blood (2005) 1.44
Rex1/Zfp42 is dispensable for pluripotency in mouse ES cells. BMC Dev Biol (2008) 1.43
High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization. Gene Expr Patterns (2005) 1.43
Totipotent embryonic stem cells arise in ground-state culture conditions. Cell Rep (2013) 1.43
Comparative transcriptome analysis of embryonic and adult stem cells with extended and limited differentiation capacity. Genome Biol (2007) 1.41
Essential role of chromatin remodeling protein Bptf in early mouse embryos and embryonic stem cells. PLoS Genet (2008) 1.37
Defining developmental potency and cell lineage trajectories by expression profiling of differentiating mouse embryonic stem cells. DNA Res (2008) 1.35
Zscan4 transiently reactivates early embryonic genes during the generation of induced pluripotent stem cells. Sci Rep (2012) 1.29
Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. Genome Res (2002) 1.25
Dax1 binds to Oct3/4 and inhibits its transcriptional activity in embryonic stem cells. Mol Cell Biol (2009) 1.20
Gene expression changes at metamorphosis induced by thyroid hormone in Xenopus laevis tadpoles. Dev Biol (2006) 1.20
A genetically engineered ovarian cancer mouse model based on fallopian tube transformation mimics human high-grade serous carcinoma development. J Pathol (2014) 1.17
The NIA cDNA project in mouse stem cells and early embryos. C R Biol (2004) 1.16
Enhanced sensitivity to IGF-II signaling links loss of imprinting of IGF2 to increased cell proliferation and tumor risk. Proc Natl Acad Sci U S A (2007) 1.15
Forkhead transcription factor FoxA1 regulates sweat secretion through Bestrophin 2 anion channel and Na-K-Cl cotransporter 1. Proc Natl Acad Sci U S A (2012) 1.13
Birth of parthenote mice directly from parthenogenetic embryonic stem cells. Stem Cells (2009) 1.13
Generation of mouse ES cell lines engineered for the forced induction of transcription factors. Sci Rep (2011) 1.11
Plac8 and Plac9, novel placental-enriched genes identified through microarray analysis. Gene (2003) 1.11
Zscan4 restores the developmental potency of embryonic stem cells. Nat Commun (2013) 1.10
Systematic repression of transcription factors reveals limited patterns of gene expression changes in ES cells. Sci Rep (2013) 1.08
Jak/Stat3 signaling promotes somatic cell reprogramming by epigenetic regulation. Stem Cells (2012) 1.08
CisView: a browser and database of cis-regulatory modules predicted in the mouse genome. DNA Res (2006) 1.06
Mouse ovary developmental RNA and protein markers from gene expression profiling. Dev Biol (2005) 1.05
Microarray analysis of somitogenesis reveals novel targets of different WNT signaling pathways in the somitic mesoderm. Dev Biol (2003) 1.04
Requirement for Shh and Fox family genes at different stages in sweat gland development. Hum Mol Genet (2009) 1.03
Identification of Zfp-57 as a downstream molecule of STAT3 and Oct-3/4 in embryonic stem cells. Biochem Biophys Res Commun (2005) 1.02
Prenatal arsenic exposure alters gene expression in the adult liver to a proinflammatory state contributing to accelerated atherosclerosis. PLoS One (2012) 1.01
Dkk4 and Eda regulate distinctive developmental mechanisms for subtypes of mouse hair. PLoS One (2010) 1.01
Incidence of "quasi-ditags" in catalogs generated by Serial Analysis of Gene Expression (SAGE). BMC Bioinformatics (2004) 1.00
A role for borg5 during trophectoderm differentiation. Stem Cells (2010) 0.99
Human ES cell profiling broadens the reach of bivalent domains. Cell Stem Cell (2007) 0.97
Expression profiling of placentomegaly associated with nuclear transplantation of mouse ES cells. Dev Biol (2003) 0.96
EDA targets revealed by skin gene expression profiles of wild-type, Tabby and Tabby EDA-A1 transgenic mice. Hum Mol Genet (2002) 0.94
Transcriptional activation by Oct4 is sufficient for the maintenance and induction of pluripotency. Cell Rep (2012) 0.94
Esg1, expressed exclusively in preimplantation embryos, germline, and embryonic stem cells, is a putative RNA-binding protein with broad RNA targets. Dev Growth Differ (2006) 0.93
Single-cell transcript analysis of human embryonic stem cells. Integr Biol (Camb) (2009) 0.91