Published in J Mol Evol on January 01, 2003
Mobile elements create structural variation: analysis of a complete human genome. Genome Res (2009) 7.06
dbRIP: a highly integrated database of retrotransposon insertion polymorphisms in humans. Hum Mutat (2006) 4.23
The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage. Genome Res (2007) 2.06
Whole genome computational comparative genomics: A fruitful approach for ascertaining Alu insertion polymorphisms. Gene (2006) 1.68
Mobile element scanning (ME-Scan) by targeted high-throughput sequencing. BMC Genomics (2010) 1.54
Under the genomic radar: the stealth model of Alu amplification. Genome Res (2005) 1.31
Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons. Gene (2006) 1.26
Tracking Alu evolution in New World primates. BMC Evol Biol (2005) 1.00
Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project. Genome Biol Evol (2015) 0.79
Insertion and deletion polymorphisms of the ancient AluS family in the human genome. Mob DNA (2017) 0.75
Laboratory methods for the analysis of primate mobile elements. Methods Mol Biol (2010) 0.75
DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A (1977) 790.54
Basic local alignment search tool. J Mol Biol (1990) 659.07
Repbase update: a database and an electronic journal of repetitive elements. Trends Genet (2000) 16.94
Alu repeats and human genomic diversity. Nat Rev Genet (2002) 12.40
DNA methylation and the frequency of CpG in animal DNA. Nucleic Acids Res (1980) 9.34
Alu repeats and human disease. Mol Genet Metab (1999) 6.64
Primate evolution - in and out of Africa. Curr Biol (1998) 6.54
Alu-containing exons are alternatively spliced. Genome Res (2002) 5.45
A fundamental division in the Alu family of repeated sequences. Proc Natl Acad Sci U S A (1988) 4.63
A recent insertion of an alu element on the Y chromosome is a useful marker for human population studies. Mol Biol Evol (1994) 4.17
Sources and evolution of human Alu repeated sequences. Proc Natl Acad Sci U S A (1988) 3.95
Alu insertion polymorphisms and human evolution: evidence for a larger population size in Africa. Genome Res (1997) 3.73
Master genes in mammalian repetitive DNA amplification. Trends Genet (1992) 3.11
African origin of human-specific polymorphic Alu insertions. Proc Natl Acad Sci U S A (1994) 3.09
Existence of at least three distinct Alu subfamilies. J Mol Evol (1987) 3.03
The distribution of human genetic diversity: a comparison of mitochondrial, autosomal, and Y-chromosome data. Am J Hum Genet (2000) 2.91
The age of Alu subfamilies. J Mol Evol (1996) 2.85
Evolution of the master Alu gene(s). J Mol Evol (1991) 2.65
Molecular evidence from retroposons that whales form a clade within even-toed ungulates. Nature (1997) 2.63
Genetic variation of recent Alu insertions in human populations. J Mol Evol (1996) 2.56
SINE insertions: powerful tools for molecular systematics. Bioessays (2000) 2.49
Alu sequences in the coding regions of mRNA: a source of protein variability. Trends Genet (1994) 2.49
Phylogenetic relations of humans and African apes from DNA sequences in the psi eta-globin region. Science (1987) 2.48
A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet (2002) 2.47
A human-specific subfamily of Alu sequences. Genomics (1991) 2.40
Phylogenetic relationships among cetartiodactyls based on insertions of short and long interpersed elements: hippopotamuses are the closest extant relatives of whales. Proc Natl Acad Sci U S A (1999) 2.24
Clustering and subfamily relationships of the Alu family in the human genome. Mol Biol Evol (1987) 2.23
Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol (2001) 2.16
Sequence conservation in Alu evolution. Nucleic Acids Res (1989) 2.14
Retroposon analysis of major cetacean lineages: the monophyly of toothed whales and the paraphyly of river dolphins. Proc Natl Acad Sci U S A (2001) 2.11
Structure and variability of recently inserted Alu family members. Nucleic Acids Res (1990) 2.04
Standardized nomenclature for Alu repeats. J Mol Evol (1996) 2.00
Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet (2001) 1.91
Alu repeats: a source for the genesis of primate microsatellites. Genomics (1995) 1.79
Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms. Genome Res (2002) 1.78
Amplification dynamics of human-specific (HS) Alu family members. Nucleic Acids Res (1991) 1.72
Potential gene conversion and source genes for recently integrated Alu elements. Genome Res (2000) 1.54
Determination of the phylogenetic relationships among Pacific salmonids by using short interspersed elements (SINEs) as temporal landmarks of evolution. Proc Natl Acad Sci U S A (1993) 1.53
Alu insertion polymorphism: a new type of marker for human population studies. Hum Biol (1992) 1.51
A human dimorphism resulting from loss of an Alu. Genomics (1992) 1.49
Alu insertion polymorphisms for the study of human genomic diversity. Genetics (2001) 1.40
Alu insertion polymorphisms in NW Africa and the Iberian Peninsula: evidence for a strong genetic boundary through the Gibraltar Straits. Hum Genet (2000) 1.38
Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol (1995) 1.35
Recently integrated human Alu repeats: finding needles in the haystack. Genetica (1999) 1.32
Gene conversion as a secondary mechanism of short interspersed element (SINE) evolution. Mol Cell Biol (1995) 1.31
CpG doublets, CpG islands and Alu repeats in long human DNA sequences from different isochore families. Gene (1998) 1.28
Non-traditional Alu evolution and primate genomic diversity. J Mol Biol (2002) 1.27
SINEs of the perfect character. Proc Natl Acad Sci U S A (1999) 1.24
Rodent BC1 RNA gene as a master gene for ID element amplification. Proc Natl Acad Sci U S A (1994) 1.24
An ancient retrovirus-like element contains hot spots for SINE insertion. Genetics (2001) 1.14
High-resolution cartography of recently integrated human chromosome 19-specific Alu fossils. J Mol Biol (1998) 1.05
Alu fossil relics--distribution and insertion polymorphism. Genome Res (1996) 1.03
A young Alu subfamily amplified independently in human and African great apes lineages. Nucleic Acids Res (1994) 1.01
Identification and analysis of a 'young' polymorphic Alu element. Biochim Biophys Acta (1995) 0.99
Identification and characterization of two polymorphic Ya5 Alu repeats. Mutat Res (1997) 0.99
Recent amplification of rat ID sequences. J Mol Biol (1996) 0.98
Polymorphic Alu insertions and the Asian origin of Native American populations. Hum Biol (1998) 0.96
Sequence diversity and chromosomal distribution of "young" Alu repeats. Gene (1995) 0.93
Phylogenetic affinities of tarsier in the context of primate Alu repeats. Mol Phylogenet Evol (1999) 0.92
PROGINS Alu insertion and human genomic diversity. Mutat Res (2002) 0.89
Alu insertion polymorphisms and the genetic structure of human populations from the Caucasus. Eur J Hum Genet (2001) 0.88
Alu insertions versus blood group plus protein genetic variability in four Amerindian populations. Ann Hum Biol (2002) 0.82
Analysis of genetic inheritance in a family quartet by whole-genome sequencing. Science (2010) 18.45
Evolutionary and biomedical insights from the rhesus macaque genome. Science (2007) 16.21
Mapping copy number variation by population-scale genome sequencing. Nature (2011) 12.55
The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science (2004) 9.97
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science (2007) 9.79
The impact of retrotransposons on human genome evolution. Nat Rev Genet (2009) 8.08
The amphioxus genome and the evolution of the chordate karyotype. Nature (2008) 8.03
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature (2007) 7.91
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature (2005) 7.74
Mobile elements create structural variation: analysis of a complete human genome. Genome Res (2009) 7.06
The genome of a songbird. Nature (2010) 5.90
Genome analysis of the platypus reveals unique signatures of evolution. Nature (2008) 5.74
Analyses of pig genomes provide insight into porcine demography and evolution. Nature (2012) 5.58
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics (2006) 5.50
Genetic evidence for high-altitude adaptation in Tibet. Science (2010) 5.37
Human population genetic structure and inference of group membership. Am J Hum Genet (2003) 4.73
The genome of the Western clawed frog Xenopus tropicalis. Science (2010) 4.70
Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation. Nature (2006) 4.68
DNA repair mediated by endonuclease-independent LINE-1 retrotransposition. Nat Genet (2002) 4.58
dbRIP: a highly integrated database of retrotransposon insertion polymorphisms in humans. Hum Mutat (2006) 4.23
Mutations in embryonic myosin heavy chain (MYH3) cause Freeman-Sheldon syndrome and Sheldon-Hall syndrome. Nat Genet (2006) 3.94
Comparative and demographic analysis of orang-utan genomes. Nature (2011) 3.83
Large-scale SNP analysis reveals clustered and continuous patterns of human genetic variation. Hum Genomics (2005) 3.77
Repetitive elements may comprise over two-thirds of the human genome. PLoS Genet (2011) 3.70
Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri. Science (2010) 3.70
Mobile elements and mammalian genome evolution. Curr Opin Genet Dev (2003) 3.68
RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons. PLoS Biol (2005) 3.50
Mammalian retroelements. Genome Res (2002) 3.49
Using VAAST to identify an X-linked disorder resulting in lethality in male infants due to N-terminal acetyltransferase deficiency. Am J Hum Genet (2011) 3.43
A probabilistic disease-gene finder for personal genomes. Genome Res (2011) 3.23
A universal classification of eukaryotic transposable elements implemented in Repbase. Nat Rev Genet (2008) 3.17
Human genomic deletions mediated by recombination between Alu elements. Am J Hum Genet (2006) 3.15
A comprehensive map of mobile element insertion polymorphisms in humans. PLoS Genet (2011) 3.14
Molecular paleontology of transposable elements in the Drosophila melanogaster genome. Proc Natl Acad Sci U S A (2003) 3.09
Age at onset in two common neurodegenerative diseases is genetically controlled. Am J Hum Genet (2002) 2.90
Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health. Genome Res (2008) 2.83
Birth of a chimeric primate gene by capture of the transposase gene from a mobile element. Proc Natl Acad Sci U S A (2006) 2.81
Genetic variation among world populations: inferences from 100 Alu insertion polymorphisms. Genome Res (2003) 2.47
A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet (2002) 2.47
SVA elements: a hominid-specific retroposon family. J Mol Biol (2005) 2.39
De novo mutations in ATP1A3 cause alternating hemiplegia of childhood. Nat Genet (2012) 2.34
Natural selection and molecular evolution in PTC, a bitter-taste receptor gene. Am J Hum Genet (2004) 2.33
A genome-wide association study of autism reveals a common novel risk locus at 5p14.1. Ann Hum Genet (2009) 2.15
Mutations in genes encoding fast-twitch contractile proteins cause distal arthrogryposis syndromes. Am J Hum Genet (2003) 2.11
Dilated cardiomyopathy: the complexity of a diverse genetic architecture. Nat Rev Cardiol (2013) 2.09
Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution. PLoS Genet (2009) 2.07
Microsatellites as EWS/FLI response elements in Ewing's sarcoma. Proc Natl Acad Sci U S A (2008) 2.06
Catarrhine primate divergence dates estimated from complete mitochondrial genomes: concordance with fossil and nuclear DNA evidence. J Hum Evol (2005) 2.05
Evolutionary history of 7SL RNA-derived SINEs in Supraprimates. Trends Genet (2007) 2.00
LINE-1 RNA splicing and influences on mammalian gene expression. Nucleic Acids Res (2006) 1.94
The microcephaly ASPM gene is expressed in proliferating tissues and encodes for a mitotic spindle protein. Hum Mol Genet (2005) 1.88
Maximum-likelihood estimation of recent shared ancestry (ERSA). Genome Res (2011) 1.88
Estimating the retrotransposition rate of human Alu elements. Gene (2006) 1.85
Methodological Considerations in Studying Centenarians: Lessons Learned From the Georgia Centenarian Studies. Annu Rev Gerontol Geriatr (2007) 1.85
Alu elements and hominid phylogenetics. Proc Natl Acad Sci U S A (2003) 1.81
L1 recombination-associated deletions generate human genomic variation. Proc Natl Acad Sci U S A (2008) 1.79
Active Alu element "A-tails": size does matter. Genome Res (2002) 1.79
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica. Genome Res (2007) 1.79
Alu retrotransposition-mediated deletion. J Mol Biol (2005) 1.79
A strong signature of balancing selection in the 5' cis-regulatory region of CCR5. Proc Natl Acad Sci U S A (2002) 1.78
Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms. Genome Res (2002) 1.78
Differential alu mobilization and polymorphism among the human and chimpanzee lineages. Genome Res (2004) 1.77
Helitrons on a roll: eukaryotic rolling-circle transposons. Trends Genet (2007) 1.74
Dfam: a database of repetitive DNA based on profile hidden Markov models. Nucleic Acids Res (2012) 1.74
Retrotransposition of Alu elements: how many sources? Trends Genet (2004) 1.73
Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages. Nucleic Acids Res (2005) 1.73
Ancestry and disease in the age of genomic medicine. N Engl J Med (2010) 1.71
Promoter polymorphism of the erythropoietin gene in severe diabetic eye and kidney complications. Proc Natl Acad Sci U S A (2008) 1.70
Reconstructing the population genetic history of the Caribbean. PLoS Genet (2013) 1.68
Whole genome computational comparative genomics: A fruitful approach for ascertaining Alu insertion polymorphisms. Gene (2006) 1.68
Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations. Genome Res (2013) 1.66
Emergence of primate genes by retrotransposon-mediated sequence transduction. Proc Natl Acad Sci U S A (2006) 1.66
Self-synthesizing DNA transposons in eukaryotes. Proc Natl Acad Sci U S A (2006) 1.65
Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution. Genome Res (2003) 1.62
Larger genetic differences within africans than between Africans and Eurasians. Genetics (2002) 1.62
Natural selection and population history in the human angiotensinogen gene (AGT): 736 complete AGT sequences in chromosomes from around the world. Am J Hum Genet (2004) 1.61