Published in J Mol Biol on May 13, 2005
The impact of retrotransposons on human genome evolution. Nat Rev Genet (2009) 8.08
Mobile elements create structural variation: analysis of a complete human genome. Genome Res (2009) 7.06
Mosaic copy number variation in human neurons. Science (2013) 3.57
Human genomic deletions mediated by recombination between Alu elements. Am J Hum Genet (2006) 3.15
LINE-1 elements in structural variation and disease. Annu Rev Genomics Hum Genet (2011) 2.42
Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity. Mutat Res (2006) 2.00
L1 recombination-associated deletions generate human genomic variation. Proc Natl Acad Sci U S A (2008) 1.79
Selective inhibition of Alu retrotransposition by APOBEC3G. Gene (2006) 1.75
Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages. Nucleic Acids Res (2005) 1.73
Alu recombination-mediated structural deletions in the chimpanzee genome. PLoS Genet (2007) 1.59
On the sequence-directed nature of human gene mutation: the role of genomic architecture and the local DNA sequence environment in mediating gene mutations underlying human inherited disease. Hum Mutat (2011) 1.53
A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome. Semin Cancer Biol (2010) 1.34
Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons. PLoS One (2008) 1.32
Small deletion variants have stable breakpoints commonly associated with alu elements. PLoS One (2008) 1.30
ERCC1/XPF limits L1 retrotransposition. DNA Repair (Amst) (2008) 1.23
Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms. Nat Commun (2015) 1.21
An alternative pathway for Alu retrotransposition suggests a role in DNA double-strand break repair. Genomics (2008) 1.11
Characterization of pre-insertion loci of de novo L1 insertions. Gene (2006) 1.01
Tracking Alu evolution in New World primates. BMC Evol Biol (2005) 1.00
LINEs and SINEs of primate evolution. Evol Anthropol (2010) 0.96
Alu-mediated 100-kb deletion in the primate genome: the loss of the agouti signaling protein gene in the lesser apes. Genome Res (2006) 0.96
The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes. Microbiol Spectr (2015) 0.96
In search of polymorphic Alu insertions with restricted geographic distributions. Genomics (2007) 0.95
Alu elements: an intrinsic source of human genome instability. Curr Opin Virol (2013) 0.94
Teaching an old dog new tricks: SINEs of canine genomic diversity. Proc Natl Acad Sci U S A (2006) 0.94
Alu distribution and mutation types of cancer genes. BMC Genomics (2011) 0.93
Roles for retrotransposon insertions in human disease. Mob DNA (2016) 0.92
Rescuing Alu: recovery of new inserts shows LINE-1 preserves Alu activity through A-tail expansion. PLoS Genet (2012) 0.88
ALU repeats in promoters are position-dependent co-response elements (coRE) that enhance or repress transcription by dimeric and monomeric progesterone receptors. Mol Endocrinol (2009) 0.88
Missense mutations in TENM4, a regulator of axon guidance and central myelination, cause essential tremor. Hum Mol Genet (2015) 0.88
Transposable Elements: No More 'Junk DNA'. Genomics Inform (2012) 0.86
Modeling the amplification dynamics of human Alu retrotransposons. PLoS Comput Biol (2005) 0.85
The human genome in the LINE of fire. Proc Natl Acad Sci U S A (2008) 0.85
Internal priming: an opportunistic pathway for L1 and Alu retrotransposition in hominins. Gene (2009) 0.85
A complex rearrangement in GBE1 causes both perinatal hypoglycemic collapse and late-juvenile-onset neuromuscular degeneration in glycogen storage disease type IV of Norwegian forest cats. Mol Genet Metab (2007) 0.85
Non-random genomic divergence in repetitive sequences of human and chimpanzee in genes of different functional categories. Mol Genet Genomics (2007) 0.83
Discovery and characterization of Alu repeat sequences via precise local read assembly. Nucleic Acids Res (2015) 0.81
Mechanism of Alu integration into the human genome. Genomic Med (2007) 0.80
Chimpanzee-specific endogenous retrovirus generates genomic variations in the chimpanzee genome. PLoS One (2014) 0.80
Computational methods for the analysis of primate mobile elements. Methods Mol Biol (2010) 0.80
Human Genomic Deletions Generated by SVA-Associated Events. Comp Funct Genomics (2012) 0.80
Carnivore-specific SINEs (Can-SINEs): distribution, evolution, and genomic impact. J Hered (2011) 0.79
Structural Variation of Alu Element and Human Disease. Genomics Inform (2016) 0.77
Reading between the LINEs to see into the past. Trends Genet (2009) 0.76
Transposable Element Targeting by piRNAs in Laurasiatherians with Distinct Transposable Element Histories. Genome Biol Evol (2016) 0.76
Insertion and deletion polymorphisms of the ancient AluS family in the human genome. Mob DNA (2017) 0.75
The dynamic proliferation of CanSINEs mirrors the complex evolution of Feliforms. BMC Evol Biol (2014) 0.75
High Levels of Sequence Diversity in the 5' UTRs of Human-Specific L1 Elements. Comp Funct Genomics (2012) 0.75
A polymorphic Alu insertion that mediates distinct disease-associated deletions. Eur J Hum Genet (2016) 0.75
Laboratory methods for the analysis of primate mobile elements. Methods Mol Biol (2010) 0.75
RISCI--Repeat Induced Sequence Changes Identifier: a comprehensive, comparative genomics-based, in silico subtractive hybridization pipeline to identify repeat induced sequence changes in closely related genomes. BMC Bioinformatics (2010) 0.75
Chicken (Gallus gallus) endogenous retrovirus generates genomic variations in the chicken genome. Mob DNA (2017) 0.75
International network of cancer genome projects. Nature (2010) 20.35
Evolutionary and biomedical insights from the rhesus macaque genome. Science (2007) 16.21
Mapping copy number variation by population-scale genome sequencing. Nature (2011) 12.55
The impact of retrotransposons on human genome evolution. Nat Rev Genet (2009) 8.08
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature (2007) 7.91
Mobile elements create structural variation: analysis of a complete human genome. Genome Res (2009) 7.06
The genome of a songbird. Nature (2010) 5.90
Genome analysis of the platypus reveals unique signatures of evolution. Nature (2008) 5.74
Human population genetic structure and inference of group membership. Am J Hum Genet (2003) 4.73
DNA repair mediated by endonuclease-independent LINE-1 retrotransposition. Nat Genet (2002) 4.58
International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics data. Database (Oxford) (2011) 4.53
dbRIP: a highly integrated database of retrotransposon insertion polymorphisms in humans. Hum Mutat (2006) 4.23
Comparative and demographic analysis of orang-utan genomes. Nature (2011) 3.83
Repetitive elements may comprise over two-thirds of the human genome. PLoS Genet (2011) 3.70
Mobile elements and mammalian genome evolution. Curr Opin Genet Dev (2003) 3.68
Mammalian retroelements. Genome Res (2002) 3.49
Human genomic deletions mediated by recombination between Alu elements. Am J Hum Genet (2006) 3.15
A comprehensive map of mobile element insertion polymorphisms in humans. PLoS Genet (2011) 3.14
Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis. Bioinformatics (2009) 3.05
BioMart Central Portal: an open database network for the biological community. Database (Oxford) (2011) 3.03
Birth of a chimeric primate gene by capture of the transposase gene from a mobile element. Proc Natl Acad Sci U S A (2006) 2.81
Genetic variation among world populations: inferences from 100 Alu insertion polymorphisms. Genome Res (2003) 2.47
A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet (2002) 2.47
SVA elements: a hominid-specific retroposon family. J Mol Biol (2005) 2.39
Abnormal calcium handling properties underlie familial hypertrophic cardiomyopathy pathology in patient-specific induced pluripotent stem cells. Cell Stem Cell (2013) 2.33
Estimating the retrotransposition rate of human Alu elements. Gene (2006) 1.85
Methodological Considerations in Studying Centenarians: Lessons Learned From the Georgia Centenarian Studies. Annu Rev Gerontol Geriatr (2007) 1.85
Genome editing of human embryonic stem cells and induced pluripotent stem cells with zinc finger nucleases for cellular imaging. Circ Res (2012) 1.84
Alu elements and hominid phylogenetics. Proc Natl Acad Sci U S A (2003) 1.81
Human prx1 gene is a target of Nrf2 and is up-regulated by hypoxia/reoxygenation: implication to tumor biology. Cancer Res (2007) 1.80
L1 recombination-associated deletions generate human genomic variation. Proc Natl Acad Sci U S A (2008) 1.79
Active Alu element "A-tails": size does matter. Genome Res (2002) 1.79
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica. Genome Res (2007) 1.79
Image-guided tumor ablation: standardization of terminology and reporting criteria--a 10-year update. Radiology (2014) 1.78
Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms. Genome Res (2002) 1.78
Differential alu mobilization and polymorphism among the human and chimpanzee lineages. Genome Res (2004) 1.77
Retrotransposition of Alu elements: how many sources? Trends Genet (2004) 1.73
Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages. Nucleic Acids Res (2005) 1.73
Ras alters epithelial-mesenchymal transition in response to TGFbeta by reducing actin fibers and cell-matrix adhesion. Cell Cycle (2009) 1.70
Whole genome computational comparative genomics: A fruitful approach for ascertaining Alu insertion polymorphisms. Gene (2006) 1.68
Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations. Genome Res (2013) 1.66
Emergence of primate genes by retrotransposon-mediated sequence transduction. Proc Natl Acad Sci U S A (2006) 1.66
Organ distribution of severe acute respiratory syndrome (SARS) associated coronavirus (SARS-CoV) in SARS patients: implications for pathogenesis and virus transmission pathways. J Pathol (2004) 1.62
Alu recombination-mediated structural deletions in the chimpanzee genome. PLoS Genet (2007) 1.59
SINEs of a nearly perfect character. Syst Biol (2006) 1.59
Phase Ⅰ clinical study of combination therapy with microwave ablation and cellular immunotherapy in hepatocellular carcinoma. Cancer Biol Ther (2011) 1.57
Mobile element scanning (ME-Scan) by targeted high-throughput sequencing. BMC Genomics (2010) 1.54
Ru2 and Ru encode mouse orthologs of the genes mutated in human Hermansky-Pudlak syndrome types 5 and 6. Nat Genet (2003) 1.54
Screening drug-induced arrhythmia [corrected] using human induced pluripotent stem cell-derived cardiomyocytes and low-impedance microelectrode arrays. Circulation (2013) 1.54
Alu insertion loci and platyrrhine primate phylogeny. Mol Phylogenet Evol (2005) 1.49
Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome. Science (2007) 1.47
Recently integrated Alu elements and human genomic diversity. Mol Biol Evol (2003) 1.46
5'-Transducing SVA retrotransposon groups spread efficiently throughout the human genome. Genome Res (2009) 1.43
Tissue specific differentially methylated regions (TDMR): Changes in DNA methylation during development. Genomics (2008) 1.42
Alu element mutation spectra: molecular clocks and the effect of DNA methylation. J Mol Biol (2004) 1.41
Carbon nanotube based 3-D matrix for enabling three-dimensional nano-magneto-electronics [corrected]. PLoS One (2012) 1.40
Mobile DNA elements in primate and human evolution. Am J Phys Anthropol (2007) 1.38
From the margins of the genome: mobile elements shape primate evolution. Bioessays (2005) 1.36
A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome. Semin Cancer Biol (2010) 1.34
Polyethylene glycol modified, cross-linked starch-coated iron oxide nanoparticles for enhanced magnetic tumor targeting. Biomaterials (2010) 1.33
Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics (2004) 1.33
Extensive individual variation in L1 retrotransposition capability contributes to human genetic diversity. Proc Natl Acad Sci U S A (2006) 1.32
Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons. PLoS One (2008) 1.32
Under the genomic radar: the stealth model of Alu amplification. Genome Res (2005) 1.31
Recently integrated Alu retrotransposons are essentially neutral residents of the human genome. Gene (2006) 1.31
Real-time contrast-enhanced ultrasound in diagnosing of focal spleen lesions. Eur J Radiol (2011) 1.31
Y chromosome STR haplotypes and the genetic structure of U.S. populations of African, European, and Hispanic ancestry. Genome Res (2003) 1.30
A mobile element based phylogeny of Old World monkeys. Mol Phylogenet Evol (2005) 1.30
Endonuclease-independent insertion provides an alternative pathway for L1 retrotransposition in the human genome. Nucleic Acids Res (2007) 1.29
Molecular mechanism of inhibition of survivin transcription by the GC-rich sequence-selective DNA binding antitumor agent, hedamycin: evidence of survivin down-regulation associated with drug sensitivity. J Biol Chem (2005) 1.27
Interleukin-31 and oncostatin-M mediate distinct signaling reactions and response patterns in lung epithelial cells. J Biol Chem (2006) 1.27
Non-traditional Alu evolution and primate genomic diversity. J Mol Biol (2002) 1.27
A comparison of microwave ablation and bipolar radiofrequency ablation both with an internally cooled probe: results in ex vivo and in vivo porcine livers. Eur J Radiol (2010) 1.27
Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons. Gene (2006) 1.26
Identification and characterization of novel polymorphic LINE-1 insertions through comparison of two human genome sequence assemblies. Gene (2006) 1.24
Human DNA quantitation using Alu element-based polymerase chain reaction. Anal Biochem (2003) 1.24
Externally controlled on-demand release of anti-HIV drug using magneto-electric nanoparticles as carriers. Nat Commun (2013) 1.23
Association of telomere length with authentic pluripotency of ES/iPS cells. Cell Res (2011) 1.22
Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements. Gene (2009) 1.21
Genomic identification and biochemical characterization of the mammalian polyamine oxidase involved in polyamine back-conversion. Biochem J (2003) 1.21
Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys. BMC Evol Biol (2011) 1.21
A comparison of the functional modules identified from time course and static PPI network data. BMC Bioinformatics (2011) 1.20
Percutaneous sonographically guided microwave coagulation therapy for hepatocellular carcinoma: results in 234 patients. AJR Am J Roentgenol (2003) 1.18
A mobile element-based evolutionary history of guenons (tribe Cercopithecini). BMC Biol (2007) 1.18