Published in Am J Hum Genet on November 26, 2001
A comparison of bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet (2003) 26.59
Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. Am J Hum Genet (2005) 14.09
A comparison of phasing algorithms for trios and unrelated individuals. Am J Hum Genet (2006) 12.45
Partition-ligation-expectation-maximization algorithm for haplotype inference with single-nucleotide polymorphisms. Am J Hum Genet (2002) 10.12
Multiple rare variants in NPC1L1 associated with reduced sterol absorption and plasma low-density lipoprotein levels. Proc Natl Acad Sci U S A (2006) 8.20
Haplotype inference in random population samples. Am J Hum Genet (2002) 8.07
A dynamic programming algorithm for haplotype block partitioning. Proc Natl Acad Sci U S A (2002) 5.12
Gametic phase estimation over large genomic regions using an adaptive window approach. Hum Genomics (2003) 4.63
GERBIL: Genotype resolution and block identification using likelihood. Proc Natl Acad Sci U S A (2004) 4.36
Comparison of the accuracy of methods of computational haplotype inference using a large empirical dataset. BMC Genet (2004) 3.15
Haplotype block structure and its applications to association studies: power and study designs. Am J Hum Genet (2002) 2.88
A method for the assessment of disease associations with single-nucleotide polymorphism haplotypes and environmental variables in case-control studies. Am J Hum Genet (2003) 2.88
Digital genotyping and haplotyping with polymerase colonies. Proc Natl Acad Sci U S A (2003) 2.77
Graphical modeling of the joint distribution of alleles at associated loci. Am J Hum Genet (2004) 2.50
A common haplotype of the nicotine acetylcholine receptor alpha 4 subunit gene is associated with vulnerability to nicotine addiction in men. Am J Hum Genet (2004) 2.47
An MCMC algorithm for haplotype assembly from whole-genome sequence data. Genome Res (2008) 2.45
Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi. Genome Res (2007) 2.37
A forest-based approach to identifying gene and gene gene interactions. Proc Natl Acad Sci U S A (2007) 2.36
Minimal haplotype tagging. Proc Natl Acad Sci U S A (2003) 2.28
HaploRec: efficient and accurate large-scale reconstruction of haplotypes. BMC Bioinformatics (2006) 2.08
Methods to impute missing genotypes for population data. Hum Genet (2007) 1.98
Polymorphisms in the low-density lipoprotein receptor-related protein 5 (LRP5) gene are associated with variation in vertebral bone mass, vertebral bone size, and stature in whites. Am J Hum Genet (2004) 1.97
Association between two mu-opioid receptor gene (OPRM1) haplotype blocks and drug or alcohol dependence. Hum Mol Genet (2006) 1.93
Understanding the accuracy of statistical haplotype inference with sequence data of known phase. Genet Epidemiol (2007) 1.87
Diplotype trend regression analysis of the ADH gene cluster and the ALDH2 gene: multiple significant associations with alcohol dependence. Am J Hum Genet (2006) 1.82
Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies. Genome Res (2004) 1.74
Finding haplotype block boundaries by using the minimum-description-length principle. Am J Hum Genet (2003) 1.71
Haplotype and missing data inference in nuclear families. Genome Res (2004) 1.69
Incorporating genotyping uncertainty in haplotype inference for single-nucleotide polymorphisms. Am J Hum Genet (2004) 1.66
HIBAG--HLA genotype imputation with attribute bagging. Pharmacogenomics J (2013) 1.66
Linkage disequilibrium, haplotype and association studies of a chromosome 4 GABA receptor gene cluster: candidate gene variants for addictions. Am J Med Genet B Neuropsychiatr Genet (2006) 1.51
Analysis of sequence variability of the bovine prion protein gene (PRNP) in German cattle breeds. Neurogenetics (2004) 1.43
Hot and cold spots of recombination in the human genome: the reason we should find them and how this can be achieved. Am J Hum Genet (2003) 1.42
A haplotype-based algorithm for multilocus linkage disequilibrium mapping of quantitative trait loci with epistasis. Genetics (2003) 1.31
The impact of using related individuals for haplotype reconstruction in population studies. Genetics (2005) 1.31
Variation in genes involved in the RANKL/RANK/OPG bone remodeling pathway are associated with bone mineral density at different skeletal sites in men. Hum Genet (2005) 1.30
Haplotype and linkage disequilibrium architecture for human cancer-associated genes. Genome Res (2002) 1.26
Statistical resolution of ambiguous HLA typing data. PLoS Comput Biol (2008) 1.25
SNPAnalyzer: a web-based integrated workbench for single-nucleotide polymorphism analysis. Nucleic Acids Res (2005) 1.23
Intra- and interpopulation genotype reconstruction from tagging SNPs. Genome Res (2006) 1.21
Haplotype information and linkage disequilibrium mapping for single nucleotide polymorphisms. Genome Res (2003) 1.21
Epistatic module detection for case-control studies: a Bayesian model with a Gibbs sampling strategy. PLoS Genet (2009) 1.17
Shape-IT: new rapid and accurate algorithm for haplotype inference. BMC Bioinformatics (2008) 1.17
Variations in the C3, C3a receptor, and C5 genes affect susceptibility to bronchial asthma. Hum Genet (2004) 1.17
Association of phospholipase A2 receptor 1 polymorphisms with idiopathic membranous nephropathy in Chinese patients in Taiwan. J Biomed Sci (2010) 1.14
Nuclear gene phylogeography using PHASE: dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation. BMC Evol Biol (2010) 1.13
Leukotriene-related gene polymorphisms in ASA-intolerant asthma: an association with a haplotype of 5-lipoxygenase. Hum Genet (2004) 1.12
Population-genetic nature of copy number variations in the human genome. Hum Mol Genet (2009) 1.12
SNPHunter: a bioinformatic software for single nucleotide polymorphism data acquisition and management. BMC Bioinformatics (2005) 1.08
Incorporating single-locus tests into haplotype cladistic analysis in case-control studies. PLoS Genet (2007) 1.08
Haplotype-based quantitative trait mapping using a clustering algorithm. BMC Bioinformatics (2006) 1.07
A survey on haplotyping algorithms for tightly linked markers. J Bioinform Comput Biol (2008) 1.06
Common human 5' dopamine transporter (SLC6A3) haplotypes yield varying expression levels in vivo. Cell Mol Neurobiol (2006) 1.05
Inference and analysis of haplotypes from combined genotyping studies deposited in dbSNP. Genome Res (2005) 1.05
A map of copy number variations in Chinese populations. PLoS One (2011) 1.05
Haplotype variation in bovine Toll-like receptor 4 and computational prediction of a positively selected ligand-binding domain. Proc Natl Acad Sci U S A (2003) 1.04
Rapid haplotype inference for nuclear families. Genome Biol (2010) 1.03
An algorithm for inferring complex haplotypes in a region of copy-number variation. Am J Hum Genet (2008) 1.02
Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions. BMC Bioinformatics (2008) 1.01
Analysis of germline variants in CDH1, IGFBP3, MMP1, MMP3, STK15 and VEGF in familial and sporadic renal cell carcinoma. PLoS One (2009) 1.00
htSNPer1.0: software for haplotype block partition and htSNPs selection. BMC Bioinformatics (2005) 0.99
Critical assessment of coalescent simulators in modeling recombination hotspots in genomic sequences. BMC Bioinformatics (2014) 0.99
A coalescence-guided hierarchical Bayesian method for haplotype inference. Am J Hum Genet (2006) 0.98
Direct molecular haplotyping by melting curve analysis of hybridization probes: beta 2-adrenergic receptor haplotypes as an example. Nucleic Acids Res (2005) 0.97
Nonparametric disequilibrium mapping of functional sites using haplotypes of multiple tightly linked single-nucleotide polymorphism markers. Genetics (2003) 0.97
Efficient inference of haplotypes from genotypes on a large animal pedigree. Genetics (2005) 0.96
SNPAnalyzer 2.0: a web-based integrated workbench for linkage disequilibrium analysis and association analysis. BMC Bioinformatics (2008) 0.95
Genotype determination for polymorphisms in linkage disequilibrium. BMC Bioinformatics (2009) 0.94
A survey of current software for haplotype phase inference. Hum Genomics (2004) 0.94
Inferring haplotypes at the NAT2 locus: the computational approach. BMC Genet (2005) 0.93
Analysis and exploration of the use of rule-based algorithms and consensus methods for the inferral of haplotypes. Genetics (2003) 0.93
A sparse marker extension tree algorithm for selecting the best set of haplotype tagging single nucleotide polymorphisms. Genet Epidemiol (2005) 0.93
Personality traits of agreeableness and extraversion are associated with ADH4 variation. Biol Psychiatry (2006) 0.92
Simultaneous estimation of haplotype frequencies and quantitative trait parameters: applications to the test of association between phenotype and diplotype configuration. Genetics (2004) 0.92
A model-based approach to selection of tag SNPs. BMC Bioinformatics (2006) 0.92
Evaluation of two methods for computational HLA haplotypes inference using a real dataset. BMC Bioinformatics (2008) 0.92
Multinomial logistic regression approach to haplotype association analysis in population-based case-control studies. BMC Genet (2006) 0.92
Association of hsp70 polymorphisms with risk of noise-induced hearing loss in Chinese automobile workers. Cell Stress Chaperones (2006) 0.90
Haplotyping methods for pedigrees. Hum Hered (2009) 0.90
A Bayesian hierarchical model for detecting haplotype-haplotype and haplotype-environment interactions in genetic association studies. Hum Hered (2011) 0.89
Polymorphisms within the canine MLPH gene are associated with dilute coat color in dogs. BMC Genet (2005) 0.89
A case-control and a family-based association study revealing an association between CYP2E1 polymorphisms and nasopharyngeal carcinoma risk in Cantonese. Carcinogenesis (2009) 0.88
An analysis of genetic variation across the MBL2 locus in Dutch Caucasians indicates that 3' haplotypes could modify circulating levels of mannose-binding lectin. Hum Genet (2005) 0.88
Common variants of ACE contribute to variable age-at-onset of Alzheimer's disease. Hum Genet (2004) 0.87
Genetic variation at aryl hydrocarbon receptor (AHR) loci in populations of Atlantic killifish (Fundulus heteroclitus) inhabiting polluted and reference habitats. BMC Evol Biol (2014) 0.87
Association between TNFRSF1B polymorphisms and bone mineral density, bone loss and fracture. Osteoporos Int (2004) 0.87
VEGF gene polymorphisms and susceptibility to colorectal cancer disease in Italian population. Int J Colorectal Dis (2008) 0.86
Haplotype inference based on Hidden Markov Models in the QTL-MAS 2010 multi-generational dataset. BMC Proc (2011) 0.86
Molecular evolution of the sheep prion protein gene. Proc Biol Sci (2005) 0.86
GenomeLaser: fast and accurate haplotyping from pedigree genotypes. Bioinformatics (2015) 0.86
Selecting additional tag SNPs for tolerating missing data in genotyping. BMC Bioinformatics (2005) 0.86
Sequence variation in the proximity of IDE may impact age at onset of both Parkinson disease and Alzheimer disease. Neurogenetics (2004) 0.85
Haplotypic structure of the X chromosome in the COGA population sample and the quality of its reconstruction by extant software packages. BMC Genet (2005) 0.85
Haplotype block partitioning as a tool for dimensionality reduction in SNP association studies. BMC Genomics (2008) 0.85
Analytical methods for immunogenetic population data. Methods Mol Biol (2012) 0.84
Haplotype reconstruction error as a classical misclassification problem: introducing sensitivity and specificity as error measures. PLoS One (2008) 0.84
Most parsimonious haplotype allele sharing determination. BMC Bioinformatics (2009) 0.84
Fast accurate missing SNP genotype local imputation. BMC Res Notes (2012) 0.84
Single-nucleotide polymorphisms of the KCNS3 gene are significantly associated with airway hyperresponsiveness. Hum Genet (2005) 0.83
A new statistical method for haplotype reconstruction from population data. Am J Hum Genet (2001) 59.30
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