Two arginine repressors regulate arginine biosynthesis in Lactobacillus plantarum.

Regulation of gene expression in a mixed-genus community: stabilized arginine biosynthesis in Streptococcus gordonii by coaggregation with Actinomyces naeslundii. J Bacteriol (2008) 1.13

Regulation of arginine acquisition and virulence gene expression in the human pathogen Streptococcus pneumoniae by transcription regulators ArgR1 and AhrC. J Biol Chem (2011) 0.98

A general method for selection of riboflavin-overproducing food grade micro-organisms. Microb Cell Fact (2006) 0.85

Transcriptome analysis of the Lactococcus lactis ArgR and AhrC regulons. Appl Environ Microbiol (2008) 0.85

Uracil salvage pathway in Lactobacillus plantarum: Transcription and genetic studies. J Bacteriol (2006) 0.84

Expression of the pyr operon of Lactobacillus plantarum is regulated by inorganic carbon availability through a second regulator, PyrR2, homologous to the pyrimidine-dependent regulator PyrR1. J Bacteriol (2006) 0.83

Regulation of the arginine deiminase system by ArgR2 interferes with arginine metabolism and fitness of Streptococcus pneumoniae. MBio (2014) 0.80

Transcriptome analysis of Enterococcus faecalis in response to alkaline stress. Front Microbiol (2015) 0.76

Listeria monocytogenes 10403S Arginine Repressor ArgR Finely Tunes Arginine Metabolism Regulation under Acidic Conditions. Front Microbiol (2017) 0.75

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis (1997) 57.27

Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature (2000) 32.30

Complete genome sequence of Lactobacillus plantarum WCFS1. Proc Natl Acad Sci U S A (2003) 8.40

Evolution of genetic redundancy. Nature (1997) 4.95

Generation of restriction map of Enterococcus faecalis OG1 and investigation of growth requirements and regions encoding biosynthetic function. J Bacteriol (1993) 4.14

Surviving the acid test: responses of gram-positive bacteria to low pH. Microbiol Mol Biol Rev (2003) 3.54

Acid- and multistress-resistant mutants of Lactococcus lactis : identification of intracellular stress signals. Mol Microbiol (2000) 1.99

Structure of the oligomerization and L-arginine binding domain of the arginine repressor of Escherichia coli. J Mol Biol (1996) 1.87

The arginine repressor of Escherichia coli. Microbiol Rev (1994) 1.77

The arginine repressor is essential for plasmid-stabilizing site-specific recombination at the ColE1 cer locus. EMBO J (1988) 1.67

Solution structure of the DNA-binding domain and model for the complex of multifunctional hexameric arginine repressor with DNA. Nat Struct Biol (1997) 1.52

Characterization of the arginine repressor from Salmonella typhimurium and its interactions with the carAB operator. J Mol Biol (1992) 1.52

Purification and initial characterization of AhrC: the regulator of arginine metabolism genes in Bacillus subtilis. Mol Microbiol (1992) 1.35

Operator interactions by the Bacillus subtilis arginine repressor/activator, AhrC: novel positioning and DNA-mediated assembly of a transcriptional activator at catabolic sites. Mol Microbiol (1997) 1.32

Structure of the arginine repressor from Bacillus stearothermophilus. Nat Struct Biol (1999) 1.31

Gene structure, organization, expression, and potential regulatory mechanisms of arginine catabolism in Enterococcus faecalis. J Bacteriol (2002) 1.30

Mutational analysis of the arginine repressor of Escherichia coli. Mol Microbiol (1994) 1.30

ArgR and AhrC are both required for regulation of arginine metabolism in Lactococcus lactis. J Bacteriol (2004) 1.27

Inhibition of human peripheral blood mononuclear cell proliferation by Streptococcus pyogenes cell extract is associated with arginine deiminase activity. Infect Immun (1998) 1.27

Arginine biosynthesis and regulation in Lactobacillus plantarum: the carA gene and the argCJBDF cluster are divergently transcribed. J Bacteriol (1997) 1.15

The highly thermostable arginine repressor of Bacillus stearothermophilus: gene cloning and repressor-operator interactions. Mol Microbiol (1997) 1.13

Arginine boxes and the argR gene in Streptomyces clavuligerus: evidence for a clear regulation of the arginine pathway. Mol Microbiol (1997) 1.11

Extent of genetic lesions of the arginine and pyrimidine biosynthetic pathways in Lactobacillus plantarum, L. paraplantarum, L. pentosus, and L. casei: prevalence of CO(2)-dependent auxotrophs and characterization of deficient arg genes in L. plantarum. Appl Environ Microbiol (2003) 1.07

Mutant Escherichia coli arginine repressor proteins that fail to bind L-arginine, yet retain the ability to bind their normal DNA-binding sites. Mol Microbiol (1994) 1.07

The structure of AhrC, the arginine repressor/activator protein from Bacillus subtilis. Acta Crystallogr D Biol Crystallogr (2002) 1.02

In Lactobacillus plantarum, carbamoyl phosphate is synthesized by two carbamoyl-phosphate synthetases (CPS): carbon dioxide differentiates the arginine-repressed from the pyrimidine-regulated CPS. J Bacteriol (2000) 0.96

Transcription regulation coupling of the divergent argG and metY promoters in Escherichia coli K-12. J Bacteriol (2003) 0.90

Hyperthermophilic Thermotoga arginine repressor binding to full-length cognate and heterologous arginine operators and to half-site targets. J Mol Biol (2003) 0.88

Mutational analysis of the thermostable arginine repressor from Bacillus stearothermophilus: dissecting residues involved in DNA binding properties. J Mol Biol (1999) 0.88

Regulation of arginine biosynthesis in the psychropiezophilic bacterium Moritella profunda: in vivo repressibility and in vitro repressor-operator contact probing. J Mol Biol (2003) 0.85

Probing activation of the prokaryotic arginine transcriptional regulator using chimeric proteins. J Mol Biol (1999) 0.85

A superrepressor mutant of the arginine repressor with a correctly predicted alteration of ligand binding specificity. J Mol Biol (1998) 0.83

Escherichia coli cells defective for the recN gene display constitutive elevation of mutagenesis at 3,N(4)-ethenocytosine via an SOS-induced mechanism. Mol Microbiol (2000) 0.82

Expression analysis of putative arcA, arcB and arcC genes partially cloned from Lactobacillus plantarum isolated from wine. J Appl Microbiol (2004) 0.82

Arginine dihydrolase pathway in Lactobacillus plantarum from orange. Int J Food Microbiol (1999) 0.81

Computational docking of L-arginine and its structural analogues to C-terminal domain of Escherichia coli arginine repressor protein (ArgRc). J Mol Model (2003) 0.77

Enterotypes of the human gut microbiome. Nature (2011) 24.36

Richness of human gut microbiome correlates with metabolic markers. Nature (2013) 6.93

10 years of the nisin-controlled gene expression system (NICE) in Lactococcus lactis. Appl Microbiol Biotechnol (2005) 2.80

New insights in the molecular biology and physiology of Streptococcus thermophilus revealed by comparative genomics. FEMS Microbiol Rev (2005) 2.58

Differential NF-kappaB pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance. Proc Natl Acad Sci U S A (2009) 2.29

Phenotypic and genomic diversity of Lactobacillus plantarum strains isolated from various environmental niches. Environ Microbiol (2009) 2.18

Emerging molecular insights into the interaction between probiotics and the host intestinal mucosa. Nat Rev Microbiol (2011) 2.15

Towards understanding molecular modes of probiotic action. Curr Opin Biotechnol (2006) 2.14

Identification of Lactobacillus plantarum genes that are induced in the gastrointestinal tract of mice. J Bacteriol (2004) 2.06

Exploring Lactobacillus plantarum genome diversity by using microarrays. J Bacteriol (2005) 2.02

Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. PLoS One (2009) 1.94

Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek (2002) 1.90

Biodiversity-based identification and functional characterization of the mannose-specific adhesin of Lactobacillus plantarum. J Bacteriol (2005) 1.85

The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates. ISME J (2012) 1.81

Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples. Appl Environ Microbiol (2011) 1.76

Genome-wide detection and analysis of cell wall-bound proteins with LPxTG-like sorting motifs. J Bacteriol (2005) 1.75

Isolation of RNA from bacterial samples of the human gastrointestinal tract. Nat Protoc (2006) 1.75

Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome. J Bacteriol (2012) 1.71

Cre-lox-based system for multiple gene deletions and selectable-marker removal in Lactobacillus plantarum. Appl Environ Microbiol (2006) 1.70

Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment. Appl Environ Microbiol (2005) 1.69

Lactobacillus plantarum gene clusters encoding putative cell-surface protein complexes for carbohydrate utilization are conserved in specific gram-positive bacteria. BMC Genomics (2006) 1.65

An agr-like two-component regulatory system in Lactobacillus plantarum is involved in production of a novel cyclic peptide and regulation of adherence. J Bacteriol (2005) 1.61

Cell to cell communication by autoinducing peptides in gram-positive bacteria. Antonie Van Leeuwenhoek (2002) 1.61

Regulation of human epithelial tight junction proteins by Lactobacillus plantarum in vivo and protective effects on the epithelial barrier. Am J Physiol Gastrointest Liver Physiol (2010) 1.60

A tale of two oxidation states: bacterial colonization of arsenic-rich environments. PLoS Genet (2007) 1.59

High temporal and inter-individual variation detected in the human ileal microbiota. Environ Microbiol (2010) 1.59

Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans. BMC Microbiol (2010) 1.59

Identification of genetic loci in Lactobacillus plantarum that modulate the immune response of dendritic cells using comparative genome hybridization. PLoS One (2010) 1.56

Human mucosal in vivo transcriptome responses to three lactobacilli indicate how probiotics may modulate human cellular pathways. Proc Natl Acad Sci U S A (2010) 1.56

Molecular basis for regulation of the heat shock transcription factor sigma32 by the DnaK and DnaJ chaperones. Mol Cell (2008) 1.51

Identification of Lactobacillus plantarum genes modulating the cytokine response of human peripheral blood mononuclear cells. BMC Microbiol (2010) 1.51

Isolation of DNA from bacterial samples of the human gastrointestinal tract. Nat Protoc (2006) 1.43

Comparative analysis of proteins with a mucus-binding domain found exclusively in lactic acid bacteria. Microbiology (2006) 1.42

Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution. Genome Res (2011) 1.41

Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis. Microbiology (2002) 1.40

Increased production of folate by metabolic engineering of Lactococcus lactis. Appl Environ Microbiol (2003) 1.37

Temporal and spatial interplay of microbiota and intestinal mucosa drive establishment of immune homeostasis in conventionalized mice. Mucosal Immunol (2012) 1.36

Genetic characterization of the bile salt response in Lactobacillus plantarum and analysis of responsive promoters in vitro and in situ in the gastrointestinal tract. J Bacteriol (2004) 1.36

Microbiota conservation and BMI signatures in adult monozygotic twins. ISME J (2012) 1.34

Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model. ISME J (2012) 1.33

Convergence in probiotic Lactobacillus gut-adaptive responses in humans and mice. ISME J (2010) 1.33

Spatial and temporal expression of Lactobacillus plantarum genes in the gastrointestinal tracts of mice. Appl Environ Microbiol (2006) 1.31

Regulation of intestinal homeostasis and immunity with probiotic lactobacilli. Trends Immunol (2013) 1.31

The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content. Microbiology (2004) 1.31

Arabinoxylans and inulin differentially modulate the mucosal and luminal gut microbiota and mucin-degradation in humanized rats. Environ Microbiol (2011) 1.31

Multifactorial diversity sustains microbial community stability. ISME J (2013) 1.29

The prophage sequences of Lactobacillus plantarum strain WCFS1. Virology (2003) 1.28

Characterization and functional analysis of the poxB gene, which encodes pyruvate oxidase in Lactobacillus plantarum. J Bacteriol (2004) 1.27

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics. ISME J (2011) 1.24

Genome sequence of the obligate methanotroph Methylosinus trichosporium strain OB3b. J Bacteriol (2010) 1.24

Saturated fat stimulates obesity and hepatic steatosis and affects gut microbiota composition by an enhanced overflow of dietary fat to the distal intestine. Am J Physiol Gastrointest Liver Physiol (2012) 1.23

Complete genome sequences of six strains of the genus Methylobacterium. J Bacteriol (2012) 1.23

Effect of different NADH oxidase levels on glucose metabolism by Lactococcus lactis: kinetics of intracellular metabolite pools determined by in vivo nuclear magnetic resonance. Appl Environ Microbiol (2002) 1.21

Regulation of the metC-cysK operon, involved in sulfur metabolism in Lactococcus lactis. J Bacteriol (2002) 1.21

IS981-mediated adaptive evolution recovers lactate production by ldhB transcription activation in a lactate dehydrogenase-deficient strain of Lactococcus lactis. J Bacteriol (2003) 1.20

The impact of probiotics and prebiotics on the immune system. Nat Rev Immunol (2012) 1.19

Genome data mining of lactic acid bacteria: the impact of bioinformatics. Curr Opin Biotechnol (2004) 1.19

Development and characterization of a subtilin-regulated expression system in Bacillus subtilis: strict control of gene expression by addition of subtilin. Appl Environ Microbiol (2005) 1.19

Major role of NAD-dependent lactate dehydrogenases in aerobic lactate utilization in Lactobacillus plantarum during early stationary phase. J Bacteriol (2004) 1.18

Use of the alr gene as a food-grade selection marker in lactic acid bacteria. Appl Environ Microbiol (2002) 1.18

Metatranscriptome analysis of the human fecal microbiota reveals subject-specific expression profiles, with genes encoding proteins involved in carbohydrate metabolism being dominantly expressed. Appl Environ Microbiol (2010) 1.18

Microbial community development in a dynamic gut model is reproducible, colon region specific, and selective for Bacteroidetes and Clostridium cluster IX. Appl Environ Microbiol (2010) 1.15

Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96. J Bacteriol (2011) 1.15

A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets. BMC Genomics (2013) 1.15

Lifestyle of Lactobacillus plantarum in the mouse caecum. Environ Microbiol (2009) 1.15

Microbiome dynamics of human epidermis following skin barrier disruption. Genome Biol (2012) 1.15

Lactate racemization as a rescue pathway for supplying D-lactate to the cell wall biosynthesis machinery in Lactobacillus plantarum. J Bacteriol (2005) 1.14

The predicted secretome of Lactobacillus plantarum WCFS1 sheds light on interactions with its environment. Microbiology (2006) 1.14

Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroups. Nucleic Acids Res (2006) 1.12

Identification of the transcriptional response of human intestinal mucosa to Lactobacillus plantarum WCFS1 in vivo. BMC Genomics (2008) 1.12

Diversity of human small intestinal Streptococcus and Veillonella populations. FEMS Microbiol Ecol (2013) 1.12

Potential and opportunities for use of recombinant lactic acid bacteria in human health. Adv Appl Microbiol (2004) 1.11

An in silico analysis of T-box regulated genes and T-box evolution in prokaryotes, with emphasis on prediction of substrate specificity of transporters. BMC Genomics (2008) 1.11

Metabolic engineering of lactic acid bacteria for the production of nutraceuticals. Antonie Van Leeuwenhoek (2002) 1.09

Microbial communities in the human small intestine: coupling diversity to metagenomics. Future Microbiol (2007) 1.07

Enzymes and genes involved in the aerobic biodegradation of methyl tert-butyl ether (MTBE). Appl Microbiol Biotechnol (2006) 1.06

Recombinant lactic acid bacteria as mucosal biotherapeutic agents. Trends Biotechnol (2011) 1.05

Characterization of the active bacterial community involved in natural attenuation processes in arsenic-rich creek sediments. Microb Ecol (2011) 1.05

Short- and long-term adaptation to ethanol stress and its cross-protective consequences in Lactobacillus plantarum. Appl Environ Microbiol (2011) 1.04

D-alanyl ester depletion of teichoic acids in Lactobacillus plantarum results in a major modification of lipoteichoic acid composition and cell wall perforations at the septum mediated by the Acm2 autolysin. J Bacteriol (2006) 1.02

The quest for probiotic effector molecules--unraveling strain specificity at the molecular level. Pharmacol Res (2012) 1.02

sigma54-Mediated control of the mannose phosphotransferase sytem in Lactobacillus plantarum impacts on carbohydrate metabolism. Microbiology (2009) 1.02

Carbon and arsenic metabolism in Thiomonas strains: differences revealed diverse adaptation processes. BMC Microbiol (2009) 1.02

Bacterial metabolism of environmental arsenic--mechanisms and biotechnological applications. Appl Microbiol Biotechnol (2013) 1.01

Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242). J Bacteriol (2011) 1.01

Functional analysis of four bile salt hydrolase and penicillin acylase family members in Lactobacillus plantarum WCFS1. Appl Environ Microbiol (2008) 1.00

Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data. Biochimie (2008) 1.00

Functional genomics of dichloromethane utilization in Methylobacterium extorquens DM4. Environ Microbiol (2011) 1.00

Fluorescence and atomic force microscopy imaging of wall teichoic acids in Lactobacillus plantarum. ACS Chem Biol (2011) 1.00

Uracil salvage is necessary for early Arabidopsis development. Plant J (2009) 0.99

Functional analysis of three plasmids from Lactobacillus plantarum. Appl Environ Microbiol (2005) 0.99

Gut bacteria-host metabolic interplay during conventionalisation of the mouse germfree colon. ISME J (2012) 0.99

Detection and isolation of chloromethane-degrading bacteria from the Arabidopsis thaliana phyllosphere, and characterization of chloromethane utilization genes. FEMS Microbiol Ecol (2011) 0.98

Genome sequence of the naturally plasmid-free Lactobacillus plantarum strain NC8 (CCUG 61730). J Bacteriol (2012) 0.98

Regulatory phenotyping reveals important diversity within the species Lactococcus lactis. Appl Environ Microbiol (2009) 0.97

Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp. strain MC1. J Bacteriol (2011) 0.97

Improvement of an experimental colitis in rats by lactic acid bacteria producing superoxide dismutase. Inflamm Bowel Dis (2006) 0.97

Involvement of pyruvate oxidase activity and acetate production in the survival of Lactobacillus plantarum during the stationary phase of aerobic growth. Appl Environ Microbiol (2006) 0.97

Genome-based in silico detection of putative manganese transport systems in Lactobacillus plantarum and their genetic analysis. Microbiology (2005) 0.97