Published in Biopolymers on December 05, 2004
Force Field for Peptides and Proteins based on the Classical Drude Oscillator. J Chem Theory Comput (2013) 1.22
Smart self-assembled hybrid hydrogel biomaterials. Angew Chem Int Ed Engl (2012) 1.03
Kar3Vik1, a member of the kinesin-14 superfamily, shows a novel kinesin microtubule binding pattern. J Cell Biol (2012) 0.91
Molecular dynamics guided study of salt bridge length dependence in both fluorinated and non-fluorinated parallel dimeric coiled-coils. Proteins (2009) 0.86
Kinesin-2 KIF3AB exhibits novel ATPase characteristics. J Biol Chem (2014) 0.84
Combining random gene fission and rational gene fusion to discover near-infrared fluorescent protein fragments that report on protein-protein interactions. ACS Synth Biol (2014) 0.79
Kinesin-2 KIF3AC and KIF3AB Can Drive Long-Range Transport along Microtubules. Biophys J (2015) 0.79
All-atom simulations and free-energy calculations of coiled-coil peptides with lipid bilayers: binding strength, structural transition, and effect on lipid dynamics. Sci Rep (2016) 0.76
Heterodimerization of Kinesin-2 KIF3AB Modulates Entry into the Processive Run. J Biol Chem (2016) 0.75
Alternative splicing creates two new architectures for human tyrosyl-tRNA synthetase. Nucleic Acids Res (2016) 0.75
Induced heterodimerization and purification of two target proteins by a synthetic coiled-coil tag. Protein Sci (2012) 0.75
HMDB: the Human Metabolome Database. Nucleic Acids Res (2007) 13.38
Targeted profiling: quantitative analysis of 1H NMR metabolomics data. Anal Chem (2006) 4.36
VADAR: a web server for quantitative evaluation of protein structure quality. Nucleic Acids Res (2003) 3.95
Rational design of alpha-helical antimicrobial peptides with enhanced activities and specificity/therapeutic index. J Biol Chem (2005) 2.28
Investigations of the effects of gender, diurnal variation, and age in human urinary metabolomic profiles. Anal Chem (2007) 2.15
Role of peptide hydrophobicity in the mechanism of action of alpha-helical antimicrobial peptides. Antimicrob Agents Chemother (2006) 1.87
LINE-1 retrotransposition requires the nucleic acid chaperone activity of the ORF1 protein. J Mol Biol (2005) 1.78
DNA binding: a novel function of Pseudomonas aeruginosa type IV pili. J Bacteriol (2005) 1.64
Structural based insights into the role of troponin in cardiac muscle pathophysiology. J Muscle Res Cell Motil (2005) 1.53
A molecular explanation for the recessive nature of parkin-linked Parkinson's disease. Nat Commun (2013) 1.51
Effects of net charge and the number of positively charged residues on the biological activity of amphipathic alpha-helical cationic antimicrobial peptides. Biopolymers (2008) 1.51
Structure of subtilosin A, a cyclic antimicrobial peptide from Bacillus subtilis with unusual sulfur to alpha-carbon cross-links: formation and reduction of alpha-thio-alpha-amino acid derivatives. Biochemistry (2004) 1.50
Structural characterization of the SARS-coronavirus spike S fusion protein core. J Biol Chem (2004) 1.48
Determination of intrinsic hydrophilicity/hydrophobicity of amino acid side chains in peptides in the absence of nearest-neighbor or conformational effects. Biopolymers (2006) 1.46
Structural and functional analysis of the Na+/H+ exchanger. Biochem J (2007) 1.40
A glycolytic burst drives glucose induction of global histone acetylation by picNuA4 and SAGA. Nucleic Acids Res (2009) 1.34
The CXCR3 binding chemokine IP-10/CXCL10: structure and receptor interactions. Biochemistry (2002) 1.33
Metabolite profiling of the intraerythrocytic malaria parasite Plasmodium falciparum by (1)H NMR spectroscopy. NMR Biomed (2009) 1.30
The Pseudomonas aeruginosa type IV pilin receptor binding domain functions as an adhesin for both biotic and abiotic surfaces. Mol Microbiol (2006) 1.26
Structural basis for the conformational adaptability of apolipophorin III, a helix-bundle exchangeable apolipoprotein. Proc Natl Acad Sci U S A (2002) 1.25
An interplay between protein disorder and structure confers the Ca2+ regulation of striated muscle. J Mol Biol (2006) 1.25
Designing heterodimeric two-stranded alpha-helical coiled-coils. Effects of hydrophobicity and alpha-helical propensity on protein folding, stability, and specificity. J Biol Chem (2002) 1.23
Smartnotebook: a semi-automated approach to protein sequential NMR resonance assignments. J Biomol NMR (2003) 1.21
A novel method to measure self-association of small amphipathic molecules: temperature profiling in reversed-phase chromatography. J Biol Chem (2003) 1.21
Comparison of biophysical and biologic properties of alpha-helical enantiomeric antimicrobial peptides. Chem Biol Drug Des (2006) 1.20
Structure of the regulatory N-domain of human cardiac troponin C in complex with human cardiac troponin I147-163 and bepridil. J Biol Chem (2002) 1.19
Peptide nanoparticles as novel immunogens: design and analysis of a prototypic severe acute respiratory syndrome vaccine. Chem Biol Drug Des (2009) 1.18
In situ orientations of protein domains: troponin C in skeletal muscle fibers. Mol Cell (2003) 1.17
Stabilizing and destabilizing clusters in the hydrophobic core of long two-stranded alpha-helical coiled-coils. J Biol Chem (2004) 1.12
Counteracting roles of AMP deaminase and AMP kinase in the development of fatty liver. PLoS One (2012) 1.12
Structural and functional consequences of the cardiac troponin C L48Q Ca(2+)-sensitizing mutation. Biochemistry (2012) 1.11
Structure of subtilosin A, an antimicrobial peptide from Bacillus subtilis with unusual posttranslational modifications linking cysteine sulfurs to alpha-carbons of phenylalanine and threonine. J Am Chem Soc (2003) 1.11
Modulation of cardiac troponin C function by the cardiac-specific N-terminus of troponin I: influence of PKA phosphorylation and involvement in cardiomyopathies. J Mol Biol (2007) 1.11
Dynamics of the C-terminal region of TnI in the troponin complex in solution. Biophys J (2006) 1.10
Cold survival in freeze-intolerant insects: the structure and function of beta-helical antifreeze proteins. Eur J Biochem (2004) 1.09
Structure-activity relationships of de novo designed cyclic antimicrobial peptides based on gramicidin S. Biopolymers (2003) 1.08
Optimization of microbial specificity in cyclic peptides by modulation of hydrophobicity within a defined structural framework. J Biol Chem (2001) 1.08
Solution structure of human cardiac troponin C in complex with the green tea polyphenol, (-)-epigallocatechin 3-gallate. J Biol Chem (2009) 1.08
Probing the structural determinants of type II' beta-turn formation in peptides and proteins. J Am Chem Soc (2002) 1.08
Real-time monitoring of the interactions of two-stranded de novo designed coiled-coils: effect of chain length on the kinetic and thermodynamic constants of binding. Biochemistry (2003) 1.07
Ubiquinone-binding site mutations in the Saccharomyces cerevisiae succinate dehydrogenase generate superoxide and lead to the accumulation of succinate. J Biol Chem (2007) 1.06
Internal pH indicators for biomolecular NMR. J Biomol NMR (2008) 1.05
Temperature profiling of polypeptides in reversed-phase liquid chromatography. I. Monitoring of dimerization and unfolding of amphipathic alpha-helical peptides. J Chromatogr A (2003) 1.05
Temperature profiling of polypeptides in reversed-phase liquid chromatography. II. Monitoring of folding and stability of two-stranded alpha-helical coiled-coils. J Chromatogr A (2003) 1.04
Temperature selectivity effects in reversed-phase liquid chromatography due to conformation differences between helical and non-helical peptides. J Chromatogr A (2003) 1.04
NMR structure of a bifunctional rhodamine labeled N-domain of troponin C complexed with the regulatory "switch" peptide from troponin I: implications for in situ fluorescence studies in muscle fibers. Biochemistry (2003) 1.02
Surface nanocrystallization of stainless steel for reduced biofilm adherence. Nanotechnology (2008) 1.02
Effect of variations in the structure of a polyleucine-based alpha-helical transmembrane peptide on its interaction with phosphatidylethanolamine Bilayers. Biophys J (2004) 1.02
Interaction of cardiac troponin with cardiotonic drugs: a structural perspective. Biochem Biophys Res Commun (2007) 1.01
Preparative reversed-phase high-performance liquid chromatography collection efficiency for an antimicrobial peptide on columns of varying diameters (1mm to 9.4mm I.D.). J Chromatogr A (2006) 1.01
Backbone dynamics of SDF-1alpha determined by NMR: interpretation in the presence of monomer-dimer equilibrium. Protein Sci (2006) 1.01
Capillary electrophoresis of cationic random coil peptide standards: effect of anionic ion-pairing reagents and comparison with reversed-phase chromatography. Electrophoresis (2004) 1.01
Effect of variations in the structure of a polyleucine-based alpha-helical transmembrane peptide on its interaction with phosphatidylcholine bilayers. Biochemistry (2002) 1.01
Clustering of large hydrophobes in the hydrophobic core of two-stranded alpha-helical coiled-coils controls protein folding and stability. J Biol Chem (2003) 1.00
A structural and functional perspective into the mechanism of Ca2+-sensitizers that target the cardiac troponin complex. J Mol Cell Cardiol (2010) 1.00
Helix capping interactions stabilize the N-terminus of the kinesin neck coiled-coil. J Struct Biol (2002) 1.00
Metabolomic profiling of asthma: diagnostic utility of urine nuclear magnetic resonance spectroscopy. J Allergy Clin Immunol (2011) 0.98
Isothermal titration calorimetry studies of the binding of a rationally designed analogue of the antimicrobial peptide gramicidin s to phospholipid bilayer membranes. Biochemistry (2005) 0.98
Spruce budworm antifreeze protein: changes in structure and dynamics at low temperature. J Mol Biol (2003) 0.96
Kinetic studies of calcium and cardiac troponin I peptide binding to human cardiac troponin C using NMR spectroscopy. Eur Biophys J (2002) 0.96
Identification of the ice-binding face of antifreeze protein from Tenebrio molitor. FEBS Lett (2002) 0.96
The binding of W7, an inhibitor of striated muscle contraction, to cardiac troponin C. Biochemistry (2005) 0.95
High-throughput dynamic light scattering method for measuring viscosity of concentrated protein solutions. Anal Biochem (2009) 0.94
Regulation of the amino-terminal transcription activation domain of progesterone receptor by a cofactor-induced protein folding mechanism. Mol Cell Biol (2005) 0.93
Fourier transform infrared spectroscopic study of the interactions of a strongly antimicrobial but weakly hemolytic analogue of gramicidin S with lipid micelles and lipid bilayer membranes. Biochemistry (2003) 0.93
The dilated cardiomyopathy G159D mutation in cardiac troponin C weakens the anchoring interaction with troponin I. Biochemistry (2008) 0.93
Effect of ring size on conformation and biological activity of cyclic cationic antimicrobial peptides. J Med Chem (2009) 0.93
Structural and functional characterization of transmembrane segment IV of the NHE1 isoform of the Na+/H+ exchanger. J Biol Chem (2005) 0.93
Defining the binding site of levosimendan and its analogues in a regulatory cardiac troponin C-troponin I complex. Biochemistry (2008) 0.92
Tracking membrane protein association in model membranes. PLoS One (2009) 0.92
Synthetic peptide vaccine and antibody therapeutic development: prevention and treatment of Pseudomonas aeruginosa. Biopolymers (2003) 0.92
A de novo designed template for generating conformation-specific antibodies that recognize alpha-helices in proteins. J Biol Chem (2002) 0.92
Defining the minimum size of a hydrophobic cluster in two-stranded alpha-helical coiled-coils: effects on protein stability. Protein Sci (2004) 0.92
The role of electrostatics in the interaction of the inhibitory region of troponin I with troponin C. Biochemistry (2005) 0.91
Effects of hydrophobicity on the antifungal activity of alpha-helical antimicrobial peptides. Chem Biol Drug Des (2008) 0.91
Interaction of gramicidin S and its aromatic amino-acid analog with phospholipid membranes. Biophys J (2008) 0.91
Isothermal titration calorimetry studies of the binding of the antimicrobial peptide gramicidin S to phospholipid bilayer membranes. Biochemistry (2005) 0.91
NMR structure of CXCR3 binding chemokine CXCL11 (ITAC). Protein Sci (2004) 0.91
Unique stabilizing interactions identified in the two-stranded alpha-helical coiled-coil: crystal structure of a cortexillin I/GCN4 hybrid coiled-coil peptide. Protein Sci (2003) 0.90
The role of unstructured highly charged regions on the stability and specificity of dimerization of two-stranded alpha-helical coiled-coils: analysis of the neck-hinge region of the kinesin-like motor protein Kif3A. J Struct Biol (2002) 0.90
Variation of the lateral mobility of transmembrane peptides with hydrophobic mismatch. J Phys Chem B (2010) 0.90
Effect of variations in the structure of a polyleucine-based alpha-helical transmembrane peptide on its interaction with phosphatidylglycerol bilayers. Biochemistry (2004) 0.89
Formate can differentiate between hyperhomocysteinemia due to impaired remethylation and impaired transsulfuration. Am J Physiol Endocrinol Metab (2011) 0.89
Phosphorylation and mutation of human cardiac troponin I deferentially destabilize the interaction of the functional regions of troponin I with troponin C. Biochemistry (2003) 0.89
Metabolomic biomarkers in a model of asthma exacerbation: urine nuclear magnetic resonance. Am J Respir Crit Care Med (2008) 0.89
Enhancing the activity of a beta-helical antifreeze protein by the engineered addition of coils. Biochemistry (2004) 0.88
Differential stability of the bovine prion protein upon urea unfolding. Protein Sci (2009) 0.88
High-yield expression of isotopically labeled peptides for use in NMR studies. Protein Sci (2003) 0.88
Calcium-dependent changes in the flexibility of the regulatory domain of troponin C in the troponin complex. J Biol Chem (2005) 0.88
Structural and functional characterization of transmembrane segment VII of the Na+/H+ exchanger isoform 1. J Biol Chem (2006) 0.88
Effects of T142 phosphorylation and mutation R145G on the interaction of the inhibitory region of human cardiac troponin I with the C-domain of human cardiac troponin C. Biochemistry (2002) 0.88
Structure and dynamics of a beta-helical antifreeze protein. Biochemistry (2002) 0.87
1H NMR derived metabolomic profile of neonatal asphyxia in umbilical cord serum: implications for hypoxic ischemic encephalopathy. J Proteome Res (2013) 0.87
Structural and functional analysis of ProQ: an osmoregulatory protein of Escherichia coli. Biochemistry (2007) 0.87