Published in Mol Cell Proteomics on February 02, 2005
AgBase: a unified resource for functional analysis in agriculture. Nucleic Acids Res (2006) 2.92
Computational methods for protein identification from mass spectrometry data. PLoS Comput Biol (2008) 1.10
Chloroplast-localized protein kinases: a step forward towards a complete inventory. J Exp Bot (2012) 1.04
Probability landscapes for integrative genomics. Theor Biol Med Model (2008) 0.93
Large-scale phosphoproteome of human whole saliva using disulfide-thiol interchange covalent chromatography and mass spectrometry. Anal Biochem (2010) 0.89
NovelFam3000--uncharacterized human protein domains conserved across model organisms. BMC Genomics (2006) 0.78
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res (2003) 52.80
The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol (2008) 31.04
InterPro: the integrative protein signature database. Nucleic Acids Res (2008) 25.07
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res (2003) 24.72
The Universal Protein Resource (UniProt). Nucleic Acids Res (2005) 23.66
The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res (2006) 22.70
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res (2004) 18.75
InterPro, progress and status in 2005. Nucleic Acids Res (2005) 17.53
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol (2004) 16.08
Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res (2008) 15.69
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics (2009) 15.08
IntAct: an open source molecular interaction database. Nucleic Acids Res (2004) 15.02
The International Protein Index: an integrated database for proteomics experiments. Proteomics (2004) 14.67
InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res (2011) 13.45
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013. Nucleic Acids Res (2012) 13.14
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96
The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res (2003) 12.81
New developments in the InterPro database. Nucleic Acids Res (2007) 12.49
Prepublication data sharing. Nature (2009) 12.24
UniProt archive. Bioinformatics (2004) 11.92
A common open representation of mass spectrometry data and its application to proteomics research. Nat Biotechnol (2004) 11.42
Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res (2010) 11.23
The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol (2007) 10.24
The GOA database in 2009--an integrated Gene Ontology Annotation resource. Nucleic Acids Res (2008) 10.21
EMBL Nucleotide Sequence Database in 2006. Nucleic Acids Res (2006) 9.72
The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. BMC Bioinformatics (2006) 8.68
The Reactome pathway knowledgebase. Nucleic Acids Res (2013) 8.56
The minimum information required for reporting a molecular interaction experiment (MIMIx). Nat Biotechnol (2007) 8.24
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol (2007) 8.03
PRIDE: the proteomics identifications database. Proteomics (2005) 7.52
The IntAct molecular interaction database in 2012. Nucleic Acids Res (2011) 7.49
The EMBL Nucleotide Sequence Database. Nucleic Acids Res (2005) 7.18
Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol (2004) 7.17
Calling on a million minds for community annotation in WikiProteins. Genome Biol (2008) 7.11
The EMBL Nucleotide Sequence Database. Nucleic Acids Res (2004) 6.72
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA. BMC Bioinformatics (2005) 6.58
Integrating biological data--the Distributed Annotation System. BMC Bioinformatics (2008) 6.56
The EBI SRS server-new features. Bioinformatics (2002) 6.38
A guide to the Proteomics Identifications Database proteomics data repository. Proteomics (2009) 5.63
The UniProt-GO Annotation database in 2011. Nucleic Acids Res (2011) 5.19
EMBL Nucleotide Sequence Database: developments in 2005. Nucleic Acids Res (2006) 5.13
PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nat Methods (2011) 5.01
High-quality protein knowledge resource: SWISS-PROT and TrEMBL. Brief Bioinform (2002) 4.95
UniProtJAPI: a remote API for accessing UniProt data. Bioinformatics (2008) 4.88
mzML--a community standard for mass spectrometry data. Mol Cell Proteomics (2010) 4.81
The Ontology Lookup Service: more data and better tools for controlled vocabulary queries. Nucleic Acids Res (2008) 4.73
Toward interoperable bioscience data. Nat Genet (2012) 4.72
IntEnz, the integrated relational enzyme database. Nucleic Acids Res (2004) 4.65
The Proteomics Identifications database: 2010 update. Nucleic Acids Res (2009) 4.47
PRIDE: new developments and new datasets. Nucleic Acids Res (2007) 4.42
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases. Nucleic Acids Res (2013) 4.39
The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res (2007) 4.23
PRIDE: a public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Res (2006) 4.19
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. Nucleic Acids Res (2005) 4.15
The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. BMC Bioinformatics (2007) 3.97
Evidence standards in experimental and inferential INSDC Third Party Annotation data. OMICS (2006) 3.97
The implications of alternative splicing in the ENCODE protein complement. Proc Natl Acad Sci U S A (2007) 3.93
The Gene Ontology Annotation (GOA) Database--an integrated resource of GO annotations to the UniProt Knowledgebase. In Silico Biol (2003) 3.86
Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database. Nucleic Acids Res (2007) 3.84
The proteomics standards initiative. Proteomics (2003) 3.78
Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles. J Proteome Res (2009) 3.77
The Proteomics Identifications Database (PRIDE) and the ProteomExchange Consortium: making proteomics data accessible. Expert Rev Proteomics (2006) 3.74
Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France. Proteomics (2007) 3.69
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Nat Biotechnol (2007) 3.55
UniSave: the UniProtKB sequence/annotation version database. Bioinformatics (2006) 3.38
QuickGO: a web-based tool for Gene Ontology searching. Bioinformatics (2009) 3.36
The European Bioinformatics Institute's data resources. Nucleic Acids Res (2003) 3.34
The Proteome Analysis database: a tool for the in silico analysis of whole proteomes. Nucleic Acids Res (2003) 3.29
Dasty2, an Ajax protein DAS client. Bioinformatics (2008) 3.26
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. Nat Methods (2012) 3.17
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res (2007) 3.13
InterPro and InterProScan: tools for protein sequence classification and comparison. Methods Mol Biol (2007) 3.05
The EBI SRS server--recent developments. Bioinformatics (2002) 3.04
The Integr8 project--a resource for genomic and proteomic data. In Silico Biol (2005) 3.03
Applications of InterPro in protein annotation and genome analysis. Brief Bioinform (2002) 3.03
The predictive power of the CluSTr database. Bioinformatics (2005) 2.85
Clinical proteomics: A need to define the field and to begin to set adequate standards. Proteomics Clin Appl (2007) 2.84
The mzIdentML data standard for mass spectrometry-based proteomics results. Mol Cell Proteomics (2012) 2.82
Submit your interaction data the IMEx way: a step by step guide to trouble-free deposition. Proteomics (2007) 2.74
Dasty and UniProt DAS: a perfect pair for protein feature visualization. Bioinformatics (2005) 2.74
ASTD: The Alternative Splicing and Transcript Diversity database. Genomics (2008) 2.72
InterPro: an integrated documentation resource for protein families, domains and functional sites. Brief Bioinform (2002) 2.66