PubRank

Douwe van Sinderen

Author PubWeight™ 201.36‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Gut microbiota composition correlates with diet and health in the elderly. Nature 2012 6.94
2 Composition, variability, and temporal stability of the intestinal microbiota of the elderly. Proc Natl Acad Sci U S A 2010 5.02
3 Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol Mol Biol Rev 2007 4.13
4 Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363. J Bacteriol 2007 3.43
5 Genome-scale analyses of health-promoting bacteria: probiogenomics. Nat Rev Microbiol 2008 3.25
6 Diversity of bifidobacteria within the infant gut microbiota. PLoS One 2012 2.71
7 Multireplicon genome architecture of Lactobacillus salivarius. Proc Natl Acad Sci U S A 2006 2.43
8 Exploring the diversity of the bifidobacterial population in the human intestinal tract. Appl Environ Microbiol 2009 2.34
9 Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor. Proc Natl Acad Sci U S A 2011 2.22
10 Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging. Proc Natl Acad Sci U S A 2010 2.14
11 Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection. Proc Natl Acad Sci U S A 2012 2.09
12 Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118. Microbiology 2002 1.92
13 Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek 2002 1.90
14 The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria. J Bacteriol 2002 1.71
15 The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. PLoS Genet 2009 1.64
16 Human gut microbiota and bifidobacteria: from composition to functionality. Antonie Van Leeuwenhoek 2008 1.62
17 Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective. Cell Mol Life Sci 2013 1.57
18 Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol. PLoS One 2013 1.56
19 Genomics and ecological overview of the genus Bifidobacterium. Int J Food Microbiol 2010 1.53
20 Diversity of the genus Lactobacillus revealed by comparative genomics of five species. Microbiology 2006 1.52
21 Bacteria as vitamin suppliers to their host: a gut microbiota perspective. Curr Opin Biotechnol 2012 1.51
22 Carbohydrate metabolism in Bifidobacteria. Genes Nutr 2011 1.50
23 Bacteriophage Tuc2009 encodes a tail-associated cell wall-degrading activity. J Bacteriol 2004 1.49
24 Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118. Appl Environ Microbiol 2006 1.48
25 Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains. Appl Environ Microbiol 2006 1.47
26 Anatomy of a lactococcal phage tail. J Bacteriol 2006 1.46
27 The genus Lactobacillus--a genomic basis for understanding its diversity. FEMS Microbiol Lett 2007 1.45
28 Insights into the taxonomy, genetics and physiology of bifidobacteria. Antonie Van Leeuwenhoek 2004 1.43
29 Microbiomic analysis of the bifidobacterial population in the human distal gut. ISME J 2009 1.43
30 Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria. Trends Microbiol 2012 1.42
31 Structural characterization and assembly of the distal tail structure of the temperate lactococcal bacteriophage TP901-1. J Bacteriol 2005 1.42
32 Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria. Antonie Van Leeuwenhoek 2006 1.41
33 Identification of the lower baseplate protein as the antireceptor of the temperate lactococcal bacteriophages TP901-1 and Tuc2009. J Bacteriol 2006 1.39
34 Bifidobacteria and humans: our special friends, from ecological to genomics perspectives. J Sci Food Agric 2013 1.39
35 Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003. Appl Environ Microbiol 2008 1.38
36 Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism. Proc Natl Acad Sci U S A 2012 1.37
37 A topological model of the baseplate of lactococcal phage Tuc2009. J Biol Chem 2007 1.36
38 Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions. Proc Natl Acad Sci U S A 2013 1.36
39 High resolution in vivo bioluminescent imaging for the study of bacterial tumour targeting. PLoS One 2012 1.36
40 Diversity, ecology and intestinal function of bifidobacteria. Microb Cell Fact 2014 1.35
41 Analysis of bifidobacterial evolution using a multilocus approach. Int J Syst Evol Microbiol 2006 1.34
42 Identification and characterization of a fructose phosphotransferase system in Bifidobacterium breve UCC2003. Appl Environ Microbiol 2006 1.32
43 Riboflavin production in Lactococcus lactis: potential for in situ production of vitamin-enriched foods. Appl Environ Microbiol 2004 1.32
44 Probing direct interactions between CodY and the oppD promoter of Lactococcus lactis. J Bacteriol 2005 1.29
45 Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei. Appl Environ Microbiol 2006 1.28
46 Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: evolutionary insights into the 936 phage species. FEMS Microbiol Lett 2006 1.28
47 Transcriptional regulation and characterization of a novel beta-fructofuranosidase-encoding gene from Bifidobacterium breve UCC2003. Appl Environ Microbiol 2005 1.27
48 From bacterial genome to functionality; case bifidobacteria. Int J Food Microbiol 2007 1.27
49 Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis. Appl Environ Microbiol 2005 1.24
50 Comparative genomics of the genus Bifidobacterium. Microbiology 2010 1.24
51 Identification and characterization of phage-resistance genes in temperate lactococcal bacteriophages. Mol Microbiol 2002 1.24
52 Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut. PLoS One 2012 1.23
53 Solution and electron microscopy characterization of lactococcal phage baseplates expressed in Escherichia coli. J Struct Biol 2010 1.22
54 The riboflavin transporter RibU in Lactococcus lactis: molecular characterization of gene expression and the transport mechanism. J Bacteriol 2006 1.20
55 Molecular and transcriptional analysis of the temperate lactococcal bacteriophage Tuc2009. Virology 2004 1.20
56 The Bacillus subtilis transition state regulator AbrB binds to the -35 promoter region of comK. FEMS Microbiol Lett 2003 1.20
57 Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses. Appl Environ Microbiol 2004 1.17
58 Lactobacillus phylogenomics--towards a reclassification of the genus. Int J Syst Evol Microbiol 2008 1.14
59 Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny. Appl Environ Microbiol 2004 1.14
60 Functional analysis of the pBC1 replicon from Bifidobacterium catenulatum L48. Appl Microbiol Biotechnol 2007 1.12
61 Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium. Microb Cell Fact 2011 1.12
62 The lactococcal phages Tuc2009 and TP901-1 incorporate two alternate forms of their tail fiber into their virions for infection specialization. J Biol Chem 2013 1.11
63 Cellodextrin utilization by bifidobacterium breve UCC2003. Appl Environ Microbiol 2011 1.11
64 Distribution of megaplasmids in Lactobacillus salivarius and other lactobacilli. J Bacteriol 2007 1.11
65 Orally administered bifidobacteria as vehicles for delivery of agents to systemic tumors. Mol Ther 2010 1.11
66 Lactococcal 936-type phages and dairy fermentation problems: from detection to evolution and prevention. Front Microbiol 2012 1.10
67 Bacteriophage orphan DNA methyltransferases: insights from their bacterial origin, function, and occurrence. Appl Environ Microbiol 2013 1.09
68 Bacteriophages as biocontrol agents of food pathogens. Curr Opin Biotechnol 2010 1.09
69 Ribose utilization by the human commensal Bifidobacterium breve UCC2003. Microb Biotechnol 2009 1.09
70 Metabolic engineering of lactic acid bacteria for the production of nutraceuticals. Antonie Van Leeuwenhoek 2002 1.09
71 Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve UCC 2003 and application of the operon in bifidobacterial tracing. Appl Environ Microbiol 2005 1.08
72 How high G+C Gram-positive bacteria and in particular bifidobacteria cope with heat stress: protein players and regulators. FEMS Microbiol Rev 2006 1.08
73 Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny. Appl Environ Microbiol 2013 1.07
74 Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003. Microb Biotechnol 2010 1.07
75 Comparative genomics of the Bifidobacterium breve taxon. BMC Genomics 2014 1.07
76 Identification of a new P335 subgroup through molecular analysis of lactococcal phages Q33 and BM13. Appl Environ Microbiol 2013 1.06
77 Comparative analyses of prophage-like elements present in bifidobacterial genomes. Appl Environ Microbiol 2009 1.06
78 Progress in genomics, metabolism and biotechnology of bifidobacteria. Int J Food Microbiol 2011 1.05
79 Bifidobacteria: from ecology to genomics. Front Biosci (Landmark Ed) 2009 1.05
80 Genetic strategies for mucin metabolism in Bifidobacterium bifidum PRL2010: an example of possible human-microbe co-evolution. Gut Microbes 2011 1.04
81 Genome analysis of the Clostridium difficile phage PhiCD6356, a temperate phage of the Siphoviridae family. Gene 2010 1.04
82 Characterization of endogenous plasmids from Lactobacillus salivarius UCC118. Appl Environ Microbiol 2008 1.04
83 An interactive regulatory network controls stress response in Bifidobacterium breve UCC2003. J Bacteriol 2009 1.04
84 Comparative analyses of prophage-like elements present in two Lactococcus lactis strains. Appl Environ Microbiol 2007 1.02
85 Multivitamin production in Lactococcus lactis using metabolic engineering. Metab Eng 2004 1.02
86 The ClgR protein regulates transcription of the clpP operon in Bifidobacterium breve UCC 2003. J Bacteriol 2005 1.00
87 The clpB gene of Bifidobacterium breve UCC 2003: transcriptional analysis and first insights into stress induction. Microbiology 2005 1.00
88 Bile-inducible efflux transporter from Bifidobacterium longum NCC2705, conferring bile resistance. Appl Environ Microbiol 2009 0.99
89 Characterization of two novel alpha-glucosidases from Bifidobacterium breve UCC2003. Appl Environ Microbiol 2008 0.98
90 Structure and functional analysis of the host recognition device of lactococcal phage tuc2009. J Virol 2013 0.98
91 Comparative genomics of Bifidobacterium animalis subsp. lactis reveals a strict monophyletic bifidobacterial taxon. Appl Environ Microbiol 2013 0.98
92 Complete Genome of Lactococcus lactis subsp. cremoris UC509.9, Host for a Model Lactococcal P335 Bacteriophage. Genome Announc 2013 0.97
93 Analysis of predicted carbohydrate transport systems encoded by Bifidobacterium bifidum PRL2010. Appl Environ Microbiol 2012 0.97
94 Lactobacillus rossii sp. nov., isolated from wheat sourdough. Int J Syst Evol Microbiol 2005 0.97
95 Complete genome sequence of Bifidobacterium bifidum S17. J Bacteriol 2010 0.96
96 Development of a luciferase-based reporter system to monitor Bifidobacterium breve UCC2003 persistence in mice. BMC Microbiol 2008 0.96
97 Characterization of the serpin-encoding gene of Bifidobacterium breve 210B. Appl Environ Microbiol 2010 0.96
98 Bifidobacterium breve UCC2003 surface exopolysaccharide production is a beneficial trait mediating commensal-host interaction through immune modulation and pathogen protection. Gut Microbes 2012 0.95
99 Microbial diversity in the human intestine and novel insights from metagenomics. Front Biosci (Landmark Ed) 2009 0.94
100 Sequence analysis of the lactococcal plasmid pNP40: a mobile replicon for coping with environmental hazards. J Bacteriol 2006 0.94
101 Molecular dissection of a bifidobacterial replicon. Appl Environ Microbiol 2007 0.93
102 Bacteriophages in dairy products: pros and cons. Biotechnol J 2007 0.93
103 Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003. Microb Biotechnol 2012 0.93
104 Two membrane proteins from Bifidobacterium breve UCC2003 constitute an ABC-type multidrug transporter. Microbiology 2006 0.93
105 Differences in lactococcal cell wall polysaccharide structure are major determining factors in bacteriophage sensitivity. MBio 2014 0.93
106 Identification and characterization of lactococcal-prophage-carried superinfection exclusion genes. Appl Environ Microbiol 2008 0.92
107 Genetic and transcriptional organization of the clpC locus in Bifidobacterium breve UCC 2003. Appl Environ Microbiol 2005 0.92
108 Isolation and characterisation of a novel bacteriocin produced by Bacillus thuringiensis strain B439. FEMS Microbiol Lett 2003 0.92
109 The impact of bacteriophages on probiotic bacteria and gut microbiota diversity. Genes Nutr 2010 0.91
110 Ability of Bifidobacterium breve to grow on different types of milk: exploring the metabolism of milk through genome analysis. Appl Environ Microbiol 2011 0.91
111 Bacterial vitamin B2, B11 and B12 overproduction: An overview. Int J Food Microbiol 2009 0.91
112 Broad-spectrum antifungal-producing lactic acid bacteria and their application in fruit models. Folia Microbiol (Praha) 2012 0.90
113 Evaluation of bifidobacterial community composition in the human gut by means of a targeted amplicon sequencing (ITS) protocol. FEMS Microbiol Ecol 2014 0.90
114 Isolation of a virulent Lactobacillus brevis phage and its application in the control of beer spoilage. J Food Prot 2011 0.90
115 Molecular characterization of hsp20, encoding a small heat shock protein of bifidobacterium breve UCC2003. Appl Environ Microbiol 2007 0.90
116 Exploiting Bifidobacterium genomes: the molecular basis of stress response. Int J Food Microbiol 2007 0.89
117 A dichotomous epigenetic mechanism governs expression of the LlaJI restriction/modification system. Mol Microbiol 2005 0.89
118 Transcription of two adjacent carbohydrate utilization gene clusters in Bifidobacterium breve UCC2003 is controlled by LacI- and repressor open reading frame kinase (ROK)-type regulators. Appl Environ Microbiol 2014 0.89
119 Macrolide resistance mediated by a Bifidobacterium breve membrane protein. Antimicrob Agents Chemother 2005 0.89
120 Phages of lactic acid bacteria: the role of genetics in understanding phage-host interactions and their co-evolutionary processes. Virology 2012 0.89
121 Expanding the molecular toolbox for Lactococcus lactis: construction of an inducible thioredoxin gene fusion expression system. Microb Cell Fact 2011 0.89
122 Discovering novel bile protection systems in Bifidobacterium breve UCC2003 through functional genomics. Appl Environ Microbiol 2011 0.88
123 Global genome transcription profiling of Bifidobacterium bifidum PRL2010 under in vitro conditions and identification of reference genes for quantitative real-time PCR. Appl Environ Microbiol 2011 0.88
124 Viral infection modulation and neutralization by camelid nanobodies. Proc Natl Acad Sci U S A 2013 0.88
125 Complete Genome Sequence of Lactobacillus plantarum Strain 16, a Broad-Spectrum Antifungal-Producing Lactic Acid Bacterium. Genome Announc 2013 0.88
126 Biodiversity of lactococcal bacteriophages isolated from 3 Gouda-type cheese-producing plants. J Dairy Sci 2013 0.87
127 Identification and characterization of an oleate hydratase-encoding gene from Bifidobacterium breve. Bioengineered 2013 0.87
128 Complete genome sequence of Bifidobacterium animalis subsp. lactis BLC1. J Bacteriol 2011 0.87
129 A two-component regulatory system controls autoregulated serpin expression in Bifidobacterium breve UCC2003. Appl Environ Microbiol 2012 0.87
130 Insights into physiological and genetic mupirocin susceptibility in bifidobacteria. Appl Environ Microbiol 2011 0.87
131 BlastXtract--a new way of exploring translated searches. Bioinformatics 2005 0.87
132 Metabolism of four α-glycosidic linkage-containing oligosaccharides by Bifidobacterium breve UCC2003. Appl Environ Microbiol 2013 0.87
133 A genetic dissection of the LlaJI restriction cassette reveals insights on a novel bacteriophage resistance system. BMC Microbiol 2006 0.87
134 Expression of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in response to environmental gut conditions. FEMS Microbiol Lett 2014 0.87
135 Lytic infection of Lactococcus lactis by bacteriophages Tuc2009 and c2 triggers alternative transcriptional host responses. Appl Environ Microbiol 2013 0.86
136 Structural aspects of the interaction of dairy phages with their host bacteria. Viruses 2012 0.86
137 Identification of two-component regulatory systems in Bifidobacterium infantis by functional complementation and degenerate PCR approaches. Appl Environ Microbiol 2003 0.86
138 Analyses of bifidobacterial prophage-like sequences. Antonie Van Leeuwenhoek 2010 0.86
139 Bifidobacterium bifidum PRL2010 modulates the host innate immune response. Appl Environ Microbiol 2013 0.86
140 Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut. Bioeng Bugs 2012 0.86
141 Biotechnological production of vitamin B2-enriched bread and pasta. J Agric Food Chem 2011 0.85
142 Polyphasic analysis indicates that Lactobacillus salivarius subsp. salivarius and Lactobacillus salivarius subsp. salicinius do not merit separate subspecies status. Int J Syst Evol Microbiol 2006 0.85
143 A general method for selection of riboflavin-overproducing food grade micro-organisms. Microb Cell Fact 2006 0.85
144 An efficient and reproducible method for transformation of genetically recalcitrant bifidobacteria. FEMS Microbiol Lett 2012 0.84
145 Construction of two Lactococcus lactis expression vectors combining the Gateway and the NIsin Controlled Expression systems. Plasmid 2011 0.83
146 A bile-inducible membrane protein mediates bifidobacterial bile resistance. Microb Biotechnol 2012 0.83
147 Rapid differentiation and in situ detection of 16 sourdough lactobacillus species by multiplex PCR. Appl Environ Microbiol 2005 0.83
148 Evaluation of adhesion properties and antibacterial activities of the infant gut commensal Bifidobacterium bifidum PRL2010. Anaerobe 2013 0.83
149 Fibrinogen-binding and platelet-aggregation activities of a Lactobacillus salivarius septicaemia isolate are mediated by a novel fibrinogen-binding protein. Mol Microbiol 2012 0.83
150 Identification of iron-regulated genes of Bifidobacterium breve UCC2003 as a basis for controlled gene expression. Bioeng Bugs 2012 0.82
151 A conserved two-component signal transduction system controls the response to phosphate starvation in Bifidobacterium breve UCC2003. Appl Environ Microbiol 2012 0.82
152 Novel phage group infecting Lactobacillus delbrueckii subsp. lactis, as revealed by genomic and proteomic analysis of bacteriophage Ldl1. Appl Environ Microbiol 2015 0.81
153 Bioprotective potential of lactic acid bacteria in malting and brewing. J Food Prot 2008 0.81
154 Transposon mutagenesis in Bifidobacterium breve: construction and characterization of a Tn5 transposon mutant library for Bifidobacterium breve UCC2003. PLoS One 2013 0.81
155 Genetic characterization of the Bifidobacterium breve UCC 2003 hrcA locus. Appl Environ Microbiol 2005 0.81
156 Characterization of the lytic-lysogenic switch of the lactococcal bacteriophage Tuc2009. Virology 2006 0.80
157 The impact of bacteriophage genomics. Curr Opin Biotechnol 2004 0.80
158 The Lactococcus lactis plasmidome: much learnt, yet still lots to discover. FEMS Microbiol Rev 2014 0.80
159 Progress in lactic acid bacterial phage research. Microb Cell Fact 2014 0.79
160 Genome sequence of Parascardovia denticolens IPLA 20019, isolated from human breast milk. J Bacteriol 2012 0.78
161 Combination of multiplex PCR and PCR-denaturing gradient gel electrophoresis for monitoring common sourdough-associated Lactobacillus species. Appl Environ Microbiol 2006 0.78
162 Genome sequence of Bifidobacterium breve DPC 6330, a strain isolated from the human intestine. J Bacteriol 2011 0.77
163 Transcriptional analysis of bacteriocin production by malt isolate Lactobacillus sakei 5. FEMS Microbiol Lett 2004 0.77
164 Exploration of the genomic diversity and core genome of the Bifidobacterium adolescentis phylogenetic group by means of a polyphasic approach. Appl Environ Microbiol 2012 0.77
165 In silico assigned resistance genes confer Bifidobacterium with partial resistance to aminoglycosides but not to β-lactams. PLoS One 2013 0.77
166 High-Quality Draft Genome Sequence of Bifidobacterium longum E18, Isolated from a Healthy Adult. Genome Announc 2013 0.77
167 Transcriptomic and morphological profiling of Aspergillus fumigatus Af293 in response to antifungal activity produced by Lactobacillus plantarum 16. Microbiology 2013 0.77
168 The Genome Sequence of Bifidobacterium moukalabense DSM 27321 Highlights the Close Phylogenetic Relatedness with the Bifidobacterium dentium Taxon. Genome Announc 2014 0.77
169 Complete genome sequence of the 936-type lactococcal bacteriophage CaseusJM1. Genome Announc 2013 0.77
170 Lactococcus lactis is capable of improving the riboflavin status in deficient rats. Br J Nutr 2005 0.76
171 Intertwinement of stress response regulons in Bifidobacterium breve UCC2003. Gut Microbes 2010 0.76
172 Lactobacillus hordei sp. nov., a bacteriocinogenic strain isolated from malted barley. Int J Syst Evol Microbiol 2008 0.75
173 Evidence for cholesterol-lowering activity by Bifidobacterium bifidum PRL2010 through gut microbiota modulation. Appl Microbiol Biotechnol 2015 0.75