Published in FEMS Microbiol Rev on August 01, 2005
Recent developments in parameter estimation and structure identification of biochemical and genomic systems. Math Biosci (2009) 2.58
Evolutionary genomics of lactic acid bacteria. J Bacteriol (2006) 1.84
A functional genomics approach to establish the complement of carbohydrate transporters in Streptococcus pneumoniae. PLoS One (2012) 1.53
System estimation from metabolic time-series data. Bioinformatics (2008) 1.43
The intricate side of systems biology. Proc Natl Acad Sci U S A (2006) 1.37
Evaluation and characterization of bacterial metabolic dynamics with a novel profiling technique, real-time metabolotyping. PLoS One (2009) 1.18
Kinetic analysis of bifidobacterial metabolism reveals a minor role for succinic acid in the regeneration of NAD+ through its growth-associated production. Appl Environ Microbiol (2006) 1.17
Lifestyle of Lactobacillus plantarum in the mouse caecum. Environ Microbiol (2009) 1.15
Identification of neutral biochemical network models from time series data. BMC Syst Biol (2009) 1.10
Pyruvate formate lyase is required for pneumococcal fermentative metabolism and virulence. Infect Immun (2009) 1.07
The pneumococcal response to oxidative stress includes a role for Rgg. Microbiology (2009) 1.02
Glycolysis and the regulation of glucose transport in Lactococcus lactis spp. lactis in batch and fed-batch culture. Microb Cell Fact (2007) 1.00
A critical view of metabolic network adaptations. HFSP J (2008) 0.98
Dissecting the energy metabolism in Mycoplasma pneumoniae through genome-scale metabolic modeling. Mol Syst Biol (2013) 0.95
Standardized assay medium to measure Lactococcus lactis enzyme activities while mimicking intracellular conditions. Appl Environ Microbiol (2011) 0.95
Pyruvate oxidase influences the sugar utilization pattern and capsule production in Streptococcus pneumoniae. PLoS One (2013) 0.93
Systems biology of lactic acid bacteria: a critical review. Microb Cell Fact (2011) 0.91
Environmental and nutritional factors that affect growth and metabolism of the pneumococcal serotype 2 strain D39 and its nonencapsulated derivative strain R6. PLoS One (2013) 0.91
Efficient production of l-lactic acid by an engineered Thermoanaerobacterium aotearoense with broad substrate specificity. Biotechnol Biofuels (2013) 0.90
Identification of a metabolic reaction network from time-series data of metabolite concentrations. PLoS One (2013) 0.88
Effect of oxygen on glucose metabolism: utilization of lactate in Staphylococcus aureus as revealed by in vivo NMR studies. PLoS One (2013) 0.86
Fine tuning of the lactate and diacetyl production through promoter engineering in Lactococcus lactis. PLoS One (2012) 0.86
Lactate dehydrogenase is the key enzyme for pneumococcal pyruvate metabolism and pneumococcal survival in blood. Infect Immun (2014) 0.84
Early adaptation to oxygen is key to the industrially important traits of Lactococcus lactis ssp. cremoris during milk fermentation. BMC Genomics (2014) 0.84
Metabolic shifts: a fitness perspective for microbial cell factories. Biotechnol Lett (2012) 0.83
The Lcn972 bacteriocin-encoding plasmid pBL1 impairs cellobiose metabolism in Lactococcus lactis. Appl Environ Microbiol (2011) 0.83
Growth phase-associated changes in the proteome and transcriptome of Lactobacillus rhamnosus GG in industrial-type whey medium. Microb Biotechnol (2011) 0.82
Genomics of dairy fermentations. Microb Biotechnol (2008) 0.81
Regulation of acetate kinase isozymes and its importance for mixed-acid fermentation in Lactococcus lactis. J Bacteriol (2014) 0.81
Transcriptional and metabolic effects of glucose on Streptococcus pneumoniae sugar metabolism. Front Microbiol (2015) 0.80
Monte-Carlo modeling of the central carbon metabolism of Lactococcus lactis: insights into metabolic regulation. PLoS One (2014) 0.79
Genome analysis of food grade lactic Acid-producing bacteria: from basics to applications. Curr Genomics (2008) 0.79
Organism-adapted specificity of the allosteric regulation of pyruvate kinase in lactic acid bacteria. PLoS Comput Biol (2013) 0.78
Challenges in enzymatic route of mannitol production. ISRN Biotechnol (2012) 0.77
Sugar Allocation to Metabolic Pathways is Tightly Regulated and Affects the Virulence of Streptococcus mutans. Genes (Basel) (2016) 0.75
Catabolism of glucose and lactose in Bifidobacterium animalis subsp. lactis, studied by 13C Nuclear Magnetic Resonance. Appl Environ Microbiol (2013) 0.75
Complete genome sequence of Lactobacillus plantarum WCFS1. Proc Natl Acad Sci U S A (2003) 8.40
Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature. Nat Prod Rep (2013) 5.38
Bistability, epigenetics, and bet-hedging in bacteria. Annu Rev Microbiol (2008) 4.74
Phenotypic variation in bacteria: the role of feedback regulation. Nat Rev Microbiol (2006) 3.73
Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363. J Bacteriol (2007) 3.43
BAGEL3: Automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides. Nucleic Acids Res (2013) 3.23
Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. Nucleic Acids Res (2005) 3.22
An alternative bactericidal mechanism of action for lantibiotic peptides that target lipid II. Science (2006) 3.05
LysM, a widely distributed protein motif for binding to (peptido)glycans. Mol Microbiol (2008) 2.98
Bet-hedging and epigenetic inheritance in bacterial cell development. Proc Natl Acad Sci U S A (2008) 2.88
Proteomics of protein secretion by Bacillus subtilis: separating the "secrets" of the secretome. Microbiol Mol Biol Rev (2004) 2.67
Subcellular sites for bacterial protein export. Mol Microbiol (2004) 2.50
Stripping Bacillus: ComK auto-stimulation is responsible for the bistable response in competence development. Mol Microbiol (2005) 2.35
Controlling competence in Bacillus subtilis: shared use of regulators. Microbiology (2003) 2.30
Phosphatases modulate the bistable sporulation gene expression pattern in Bacillus subtilis. Mol Microbiol (2005) 2.29
Cell wall attachment of a widely distributed peptidoglycan binding domain is hindered by cell wall constituents. J Biol Chem (2003) 2.28
The Lactococcus lactis CodY regulon: identification of a conserved cis-regulatory element. J Biol Chem (2005) 2.11
BAGEL2: mining for bacteriocins in genomic data. Nucleic Acids Res (2010) 2.08
A generally applicable validation scheme for the assessment of factors involved in reproducibility and quality of DNA-microarray data. BMC Genomics (2005) 1.96
Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data. Genome Biol (2004) 1.93
Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek (2002) 1.90
MicroPreP: a cDNA microarray data pre-processing framework. Appl Bioinformatics (2003) 1.86
Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach. Nucleic Acids Res (2002) 1.84
Lantibiotic structures as guidelines for the design of peptides that can be modified by lantibiotic enzymes. Biochemistry (2005) 1.84
The relative value of operon predictions. Brief Bioinform (2008) 1.81
Time-resolved determination of the CcpA regulon of Lactococcus lactis subsp. cremoris MG1363. J Bacteriol (2006) 1.69
Post-translational modification of therapeutic peptides by NisB, the dehydratase of the lantibiotic nisin. Biochemistry (2005) 1.68
FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes. Bioinformatics (2007) 1.65
BAGEL: a web-based bacteriocin genome mining tool. Nucleic Acids Res (2006) 1.64
CodY of Streptococcus pneumoniae: link between nutritional gene regulation and colonization. J Bacteriol (2007) 1.64
Is the glycolytic flux in Lactococcus lactis primarily controlled by the redox charge? Kinetics of NAD(+) and NADH pools determined in vivo by 13C NMR. J Biol Chem (2002) 1.62
The iturin and fengycin families of lipopeptides are key factors in antagonism of Bacillus subtilis toward Podosphaera fusca. Mol Plant Microbe Interact (2007) 1.61
Transient heterogeneity in extracellular protease production by Bacillus subtilis. Mol Syst Biol (2008) 1.60
Effects of phosphorelay perturbations on architecture, sporulation, and spore resistance in biofilms of Bacillus subtilis. J Bacteriol (2006) 1.56
Genome engineering reveals large dispensable regions in Bacillus subtilis. Mol Biol Evol (2003) 1.55
UniFrag and GenomePrimer: selection of primers for genome-wide production of unique amplicons. Bioinformatics (2003) 1.55
Novel surface display system for proteins on non-genetically modified gram-positive bacteria. Appl Environ Microbiol (2006) 1.53
SpxB regulates O-acetylation-dependent resistance of Lactococcus lactis peptidoglycan to hydrolysis. J Biol Chem (2007) 1.51
Regulation of glutamine and glutamate metabolism by GlnR and GlnA in Streptococcus pneumoniae. J Biol Chem (2006) 1.50
Autolysis of Lactococcus lactis is increased upon D-alanine depletion of peptidoglycan and lipoteichoic acids. J Bacteriol (2005) 1.49
The novel transcriptional regulator SczA mediates protection against Zn2+ stress by activation of the Zn2+-resistance gene czcD in Streptococcus pneumoniae. Mol Microbiol (2007) 1.49
The Rok protein of Bacillus subtilis represses genes for cell surface and extracellular functions. J Bacteriol (2005) 1.49
A novel class of heat and secretion stress-responsive genes is controlled by the autoregulated CssRS two-component system of Bacillus subtilis. J Bacteriol (2002) 1.48
PePPER: a webserver for prediction of prokaryote promoter elements and regulons. BMC Genomics (2012) 1.47
NisT, the transporter of the lantibiotic nisin, can transport fully modified, dehydrated, and unmodified prenisin and fusions of the leader peptide with non-lantibiotic peptides. J Biol Chem (2004) 1.47
Dissection and modulation of the four distinct activities of nisin by mutagenesis of rings A and B and by C-terminal truncation. Appl Environ Microbiol (2007) 1.46
The cop operon is required for copper homeostasis and contributes to virulence in Streptococcus pneumoniae. Mol Microbiol (2011) 1.46
AcmA of Lactococcus lactis is an N-acetylglucosaminidase with an optimal number of LysM domains for proper functioning. FEBS J (2005) 1.45
To have neighbour's fare: extending the molecular toolbox for Streptococcus pneumoniae. Microbiology (2006) 1.45
Temporal separation of distinct differentiation pathways by a dual specificity Rap-Phr system in Bacillus subtilis. Mol Microbiol (2007) 1.44
Comparative study of the thermostabilizing properties of mannosylglycerate and other compatible solutes on model enzymes. Extremophiles (2002) 1.44
Live Cell Imaging of Bacillus subtilis and Streptococcus pneumoniae using Automated Time-lapse Microscopy. J Vis Exp (2011) 1.43
The Portuguese Society of Rheumatology position paper on the use of biosimilars. Acta Reumatol Port (2014) 1.42
Copper stress affects iron homeostasis by destabilizing iron-sulfur cluster formation in Bacillus subtilis. J Bacteriol (2010) 1.40
ANKH and susceptibility to and severity of ankylosing spondylitis. J Rheumatol (2011) 1.40
Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases. Bioinformatics (2004) 1.38
Projector: automatic contig mapping for gap closure purposes. Nucleic Acids Res (2003) 1.38
The intricate side of systems biology. Proc Natl Acad Sci U S A (2006) 1.37
Production of dehydroamino acid-containing peptides by Lactococcus lactis. Appl Environ Microbiol (2007) 1.36
LmrCD is a major multidrug resistance transporter in Lactococcus lactis. Mol Microbiol (2006) 1.34
Probing direct interactions between CodY and the oppD promoter of Lactococcus lactis. J Bacteriol (2005) 1.29
Cell envelope stress induced by the bacteriocin Lcn972 is sensed by the Lactococcal two-component system CesSR. Mol Microbiol (2007) 1.28
ArgR and AhrC are both required for regulation of arginine metabolism in Lactococcus lactis. J Bacteriol (2004) 1.27
Automated smoother for the numerical decoupling of dynamics models. BMC Bioinformatics (2007) 1.27
Bet hedging or not? A guide to proper classification of microbial survival strategies. Bioessays (2011) 1.26
Development of genomic array footprinting for identification of conditionally essential genes in Streptococcus pneumoniae. Appl Environ Microbiol (2007) 1.26
Mechanisms and evolution of control logic in prokaryotic transcriptional regulation. Microbiol Mol Biol Rev (2009) 1.25
Transcriptome analysis of temporal regulation of carbon metabolism by CcpA in Bacillus subtilis reveals additional target genes. J Mol Microbiol Biotechnol (2007) 1.25
Transcriptome analysis and related databases of Lactococcus lactis. Antonie Van Leeuwenhoek (2002) 1.25
Identification and characterization of two novel clostridial bacteriocins, circularin A and closticin 574. Appl Environ Microbiol (2003) 1.25
Heterochronic phosphorelay gene expression as a source of heterogeneity in Bacillus subtilis spore formation. J Bacteriol (2010) 1.23
Visualization of differential gene expression by improved cyan fluorescent protein and yellow fluorescent protein production in Bacillus subtilis. Appl Environ Microbiol (2004) 1.21