Published in Nucleic Acids Res on May 15, 2013
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Computational approaches to natural product discovery. Nat Chem Biol (2015) 1.05
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Genome mining reveals unlocked bioactive potential of marine Gram-negative bacteria. BMC Genomics (2015) 1.02
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Cerecidins, novel lantibiotics from Bacillus cereus with potent antimicrobial activity. Appl Environ Microbiol (2014) 0.95
Genome mining for ribosomally synthesized and post-translationally modified peptides (RiPPs) in anaerobic bacteria. BMC Genomics (2014) 0.93
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Synthetic biology to access and expand nature's chemical diversity. Nat Rev Microbiol (2016) 0.91
Automated genome mining of ribosomal peptide natural products. ACS Chem Biol (2014) 0.91
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Bovicin HJ50-like lantibiotics, a novel subgroup of lantibiotics featured by an indispensable disulfide bridge. PLoS One (2014) 0.90
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Suicin 90-1330 from a nonvirulent strain of Streptococcus suis: a nisin-related lantibiotic active on gram-positive swine pathogens. Appl Environ Microbiol (2014) 0.87
Complete Genomes of Bacillus coagulans S-lac and Bacillus subtilis TO-A JPC, Two Phylogenetically Distinct Probiotics. PLoS One (2016) 0.87
Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin. BMC Genomics (2015) 0.86
Independent Co-Option of a Tailed Bacteriophage into a Killing Complex in Pseudomonas. MBio (2015) 0.86
Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis. BMC Genomics (2014) 0.86
Thusin, a Novel Two-Component Lantibiotic with Potent Antimicrobial Activity against Several Gram-Positive Pathogens. Front Microbiol (2016) 0.85
Unearthing the genomes of plant-beneficial Pseudomonas model strains WCS358, WCS374 and WCS417. BMC Genomics (2015) 0.84
Identification and analysis of the bacterial endosymbiont specialized for production of the chemotherapeutic natural product ET-743. Environ Microbiol (2015) 0.84
The Sound of Silence: Activating Silent Biosynthetic Gene Clusters in Marine Microorganisms. Mar Drugs (2015) 0.84
Using Bacterial Genomes and Essential Genes for the Development of New Antibiotics. Biochem Pharmacol (2016) 0.84
Improved lanthipeptide detection and prediction for antiSMASH. PLoS One (2014) 0.83
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The Bacillus cereus group is an excellent reservoir of novel lanthipeptides. Appl Environ Microbiol (2014) 0.81
Draft Genome Sequence of the Nonstarter Bacteriocin-Producing Strain Enterococcus mundtii CRL35. Genome Announc (2014) 0.81
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A new genome-mining tool redefines the lasso peptide biosynthetic landscape. Nat Chem Biol (2017) 0.79
A large scale prediction of bacteriocin gene blocks suggests a wide functional spectrum for bacteriocins. BMC Bioinformatics (2015) 0.79
Comparative genomics of Roseobacter clade bacteria isolated from the accessory nidamental gland of Euprymna scolopes. Front Microbiol (2015) 0.79
Next-Generation Whole-Genome Sequencing of Eight Strains of Bacillus cereus, Isolated from Food. Genome Announc (2015) 0.79
Draft Genome Sequences of Seven Thermophilic Spore-Forming Bacteria Isolated from Foods That Produce Highly Heat-Resistant Spores, Comprising Geobacillus spp., Caldibacillus debilis, and Anoxybacillus flavithermus. Genome Announc (2016) 0.79
Bacteriocins: Novel Solutions to Age Old Spore-Related Problems? Front Microbiol (2016) 0.78
Distribution and Genetic Diversity of Bacteriocin Gene Clusters in Rumen Microbial Genomes. Appl Environ Microbiol (2015) 0.78
Microbial bioinformatics for food safety and production. Brief Bioinform (2015) 0.78
Comparative genomic analysis of multiple strains of two unusual plant pathogens: Pseudomonas corrugata and Pseudomonas mediterranea. Front Microbiol (2015) 0.78
Influence of Niche-Specific Nutrients on Secondary Metabolism in Vibrionaceae. Appl Environ Microbiol (2016) 0.78
Discovery of Azurin-Like Anticancer Bacteriocins from Human Gut Microbiome through Homology Modeling and Molecular Docking against the Tumor Suppressor p53. Biomed Res Int (2016) 0.78
Cyclisation mechanisms in the biosynthesis of ribosomally synthesised and post-translationally modified peptides. Beilstein J Org Chem (2016) 0.77
A Profile Hidden Markov Model to investigate the distribution and frequency of LanB-encoding lantibiotic modification genes in the human oral and gut microbiome. PeerJ (2017) 0.77
Genomic comparison of sporeforming bacilli isolated from milk. BMC Genomics (2014) 0.77
Comparison of Lactobacillus crispatus isolates from Lactobacillus-dominated vaginal microbiomes with isolates from microbiomes containing bacterial vaginosis-associated bacteria. Microbiology (2016) 0.77
Three Novel Lantibiotics, Ticins A1, A3, and A4, Have Extremely Stable Properties and Are Promising Food Biopreservatives. Appl Environ Microbiol (2015) 0.76
Draft Genome Sequence of the Bacteriocin-Producing Strain Enterococcus faecium M3K31, Isolated from Griffon Vultures (Gyps fulvus subsp. fulvus). Genome Announc (2016) 0.76
Genome Sequence of Geobacillus sp. Strain ZGt-1, an Antibacterial Peptide-Producing Bacterium from Hot Springs in Jordan. Genome Announc (2015) 0.76
Comparative genome analysis of the candidate functional starter culture strains Lactobacillus fermentum 222 and Lactobacillus plantarum 80 for controlled cocoa bean fermentation processes. BMC Genomics (2015) 0.76
Genome Sequences of 12 Spore-Forming Bacillus Species, Comprising Bacillus coagulans, Bacillus licheniformis, Bacillus amyloliquefaciens, Bacillus sporothermodurans, and Bacillus vallismortis, Isolated from Foods. Genome Announc (2016) 0.76
Genome-guided Investigation of Antibiotic Substances produced by Allosalinactinospora lopnorensis CA15-2(T) from Lop Nor region, China. Sci Rep (2016) 0.75
Potential probiotic-associated traits revealed from completed high quality genome sequence of Lactobacillus fermentum 3872. Stand Genomic Sci (2017) 0.75
Data on genome analysis of Bacillus velezensis LS69. Data Brief (2017) 0.75
The Variable Regions of Lactobacillus rhamnosus Genomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires. Genome Biol Evol (2016) 0.75
Recent advances in microbial fermentation for dairy and health. F1000Res (2017) 0.75
Mechanistic Understanding of Lanthipeptide Biosynthetic Enzymes. Chem Rev (2017) 0.75
Complete Genome Sequence of Lactobacillus rhamnosus Strain LRB. Genome Announc (2016) 0.75
Complete Genome Sequence of Bacillus amyloliquefaciens Strain BH072, Isolated from Honey. Genome Announc (2015) 0.75
Ribosomally synthesized and post-translationally modified peptide natural product discovery in the genomic era. Curr Opin Chem Biol (2017) 0.75
Draft Genome Sequences of Two Geobacillus Species Strains, Isolated from Oil Wells and Surface Soil above Oil Pools. Genome Announc (2016) 0.75
Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species. BMC Genomics (2016) 0.75
Draft Genome Sequence of Lactobacillus plantarum MPL16, a Wakame-Utilizing Immunobiotic Strain Isolated from Swine Feces. Genome Announc (2017) 0.75
Draft Genome Sequence of Bacillus mycoides M2E15, a Strain Isolated from the Endosphere of Potato. Genome Announc (2016) 0.75
Draft Genome Sequence of the Bacteriocinogenic Strain Enterococcus faecalis DBH18, Isolated from Mallard Ducks (Anas platyrhynchos). Genome Announc (2016) 0.75
One-pot synthesis of class II lanthipeptide bovicin HJ50 via an engineered lanthipeptide synthetase. Sci Rep (2016) 0.75
Stoichiometry and structure of a lantibiotic maturation complex. Sci Rep (2017) 0.75
The complete genome sequence of the yogurt isolate Streptococcus thermophilus ACA-DC 2. Stand Genomic Sci (2017) 0.75
Genome mining unveils widespread natural product biosynthetic capacity in human oral microbe Streptococcus mutans. Sci Rep (2016) 0.75
A genomic view of food-related and probiotic Enterococcus strains. DNA Res (2016) 0.75
Genomic Features and Niche-Adaptation of Enterococcus faecium Strains from Korean Soybean-Fermented Foods. PLoS One (2016) 0.75
Draft Genome Sequence of Streptococcus equinus (Streptococcus bovis) HC5, a Lantibiotic Producer from the Bovine Rumen. Genome Announc (2015) 0.75
Draft Genome Sequences of Five Spore-Forming Food Isolates of Bacillus pumilus. Genome Announc (2015) 0.75
Prospects of In vivo Incorporation of Non-canonical Amino Acids for the Chemical Diversification of Antimicrobial Peptides. Front Microbiol (2017) 0.75
Complete Genome Sequence of Brevibacterium linens SMQ-1335. Genome Announc (2016) 0.75
Whole genome sequence of two Rathayibacter toxicus strains reveals a tunicamycin biosynthetic cluster similar to Streptomyces chartreusis. PLoS One (2017) 0.75
Draft Genome Sequence of Enterococcus canintestini 49, a Potential Probiotic That Produces Multiple Bacteriocins. Genome Announc (2017) 0.75
Genome analysis reveals insights of the endophytic Bacillus toyonensis BAC3151 as a potentially novel agent for biocontrol of plant pathogens. World J Microbiol Biotechnol (2017) 0.75
Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics. PLoS One (2017) 0.75
Draft Genome Sequence of Lactobacillus curvatus FLEC03, a Meat-Borne Isolate from Beef Carpaccio Packaged in a Modified Atmosphere. Genome Announc (2017) 0.75
In silico Prediction, in vitro Antibacterial Spectrum, and Physicochemical Properties of a Putative Bacteriocin Produced by Lactobacillus rhamnosus Strain L156.4. Front Microbiol (2017) 0.75
Draft Genome Sequence of Bacillus velezensis GF610, a Producer of Potent Anti-Listeria Agents. Genome Announc (2017) 0.75
Draft Genome Sequences of Bacillus cereus E41 and Bacillus anthracis F34 Isolated from Algerian Salt Lakes. Genome Announc (2017) 0.75
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Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics (2007) 47.63
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Res (2011) 9.22
Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature. Nat Prod Rep (2013) 5.38
Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella. Proc Natl Acad Sci U S A (2005) 5.02
Discovery of a widely distributed toxin biosynthetic gene cluster. Proc Natl Acad Sci U S A (2008) 3.20
Bacteriocins - a viable alternative to antibiotics? Nat Rev Microbiol (2012) 2.76
BAGEL2: mining for bacteriocins in genomic data. Nucleic Acids Res (2010) 2.08
Thuricin CD, a posttranslationally modified bacteriocin with a narrow spectrum of activity against Clostridium difficile. Proc Natl Acad Sci U S A (2010) 1.89
Metagenome mining reveals polytheonamides as posttranslationally modified ribosomal peptides. Science (2012) 1.84
BAGEL: a web-based bacteriocin genome mining tool. Nucleic Acids Res (2006) 1.64
Genome mining for ribosomally synthesized natural products. Curr Opin Chem Biol (2010) 1.58
Genome mining and genetic analysis of cypemycin biosynthesis reveal an unusual class of posttranslationally modified peptides. Proc Natl Acad Sci U S A (2010) 1.52
Isolation and structural characterization of capistruin, a lasso peptide predicted from the genome sequence of Burkholderia thailandensis E264. J Am Chem Soc (2008) 1.47
BACTIBASE second release: a database and tool platform for bacteriocin characterization. BMC Microbiol (2010) 1.46
Sublancin is not a lantibiotic but an S-linked glycopeptide. Nat Chem Biol (2011) 1.44
Evolution of lanthipeptide synthetases. Proc Natl Acad Sci U S A (2012) 1.44
Angiotensin-(1-7) with thioether bridge: an angiotensin-converting enzyme-resistant, potent angiotensin-(1-7) analog. J Pharmacol Exp Ther (2008) 1.26
Cysteine S-glycosylation, a new post-translational modification found in glycopeptide bacteriocins. FEBS Lett (2011) 1.19
Designing and producing modified, new-to-nature peptides with antimicrobial activity by use of a combination of various lantibiotic modification enzymes. ACS Synth Biol (2013) 1.16
Precursor-centric genome-mining approach for lasso peptide discovery. Proc Natl Acad Sci U S A (2012) 1.14
Synthetic biotechnology to study and engineer ribosomal bottromycin biosynthesis. Chem Biol (2012) 1.14
Enterocin 96, a novel class II bacteriocin produced by Enterococcus faecalis WHE 96, isolated from Munster cheese. Appl Environ Microbiol (2009) 0.90
Complete genome sequence of Lactobacillus plantarum WCFS1. Proc Natl Acad Sci U S A (2003) 8.40
Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature. Nat Prod Rep (2013) 5.38
Bistability, epigenetics, and bet-hedging in bacteria. Annu Rev Microbiol (2008) 4.74
Phenotypic variation in bacteria: the role of feedback regulation. Nat Rev Microbiol (2006) 3.73
Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363. J Bacteriol (2007) 3.43
Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. Nucleic Acids Res (2005) 3.22
An alternative bactericidal mechanism of action for lantibiotic peptides that target lipid II. Science (2006) 3.05
LysM, a widely distributed protein motif for binding to (peptido)glycans. Mol Microbiol (2008) 2.98
Bet-hedging and epigenetic inheritance in bacterial cell development. Proc Natl Acad Sci U S A (2008) 2.88
Proteomics of protein secretion by Bacillus subtilis: separating the "secrets" of the secretome. Microbiol Mol Biol Rev (2004) 2.67
Subcellular sites for bacterial protein export. Mol Microbiol (2004) 2.50
Stripping Bacillus: ComK auto-stimulation is responsible for the bistable response in competence development. Mol Microbiol (2005) 2.35
Controlling competence in Bacillus subtilis: shared use of regulators. Microbiology (2003) 2.30
Phosphatases modulate the bistable sporulation gene expression pattern in Bacillus subtilis. Mol Microbiol (2005) 2.29
Cell wall attachment of a widely distributed peptidoglycan binding domain is hindered by cell wall constituents. J Biol Chem (2003) 2.28
The Lactococcus lactis CodY regulon: identification of a conserved cis-regulatory element. J Biol Chem (2005) 2.11
BAGEL2: mining for bacteriocins in genomic data. Nucleic Acids Res (2010) 2.08
A generally applicable validation scheme for the assessment of factors involved in reproducibility and quality of DNA-microarray data. BMC Genomics (2005) 1.96
Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data. Genome Biol (2004) 1.93
Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek (2002) 1.90
MicroPreP: a cDNA microarray data pre-processing framework. Appl Bioinformatics (2003) 1.86
Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach. Nucleic Acids Res (2002) 1.84
Lantibiotic structures as guidelines for the design of peptides that can be modified by lantibiotic enzymes. Biochemistry (2005) 1.84
The relative value of operon predictions. Brief Bioinform (2008) 1.81
Time-resolved determination of the CcpA regulon of Lactococcus lactis subsp. cremoris MG1363. J Bacteriol (2006) 1.69
Post-translational modification of therapeutic peptides by NisB, the dehydratase of the lantibiotic nisin. Biochemistry (2005) 1.68
FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes. Bioinformatics (2007) 1.65
CodY of Streptococcus pneumoniae: link between nutritional gene regulation and colonization. J Bacteriol (2007) 1.64
BAGEL: a web-based bacteriocin genome mining tool. Nucleic Acids Res (2006) 1.64
The iturin and fengycin families of lipopeptides are key factors in antagonism of Bacillus subtilis toward Podosphaera fusca. Mol Plant Microbe Interact (2007) 1.61
Transient heterogeneity in extracellular protease production by Bacillus subtilis. Mol Syst Biol (2008) 1.60
Effects of phosphorelay perturbations on architecture, sporulation, and spore resistance in biofilms of Bacillus subtilis. J Bacteriol (2006) 1.56
UniFrag and GenomePrimer: selection of primers for genome-wide production of unique amplicons. Bioinformatics (2003) 1.55
Genome engineering reveals large dispensable regions in Bacillus subtilis. Mol Biol Evol (2003) 1.55
Novel surface display system for proteins on non-genetically modified gram-positive bacteria. Appl Environ Microbiol (2006) 1.53
SpxB regulates O-acetylation-dependent resistance of Lactococcus lactis peptidoglycan to hydrolysis. J Biol Chem (2007) 1.51
Regulation of glutamine and glutamate metabolism by GlnR and GlnA in Streptococcus pneumoniae. J Biol Chem (2006) 1.50
Autolysis of Lactococcus lactis is increased upon D-alanine depletion of peptidoglycan and lipoteichoic acids. J Bacteriol (2005) 1.49
The novel transcriptional regulator SczA mediates protection against Zn2+ stress by activation of the Zn2+-resistance gene czcD in Streptococcus pneumoniae. Mol Microbiol (2007) 1.49
The Rok protein of Bacillus subtilis represses genes for cell surface and extracellular functions. J Bacteriol (2005) 1.49
A novel class of heat and secretion stress-responsive genes is controlled by the autoregulated CssRS two-component system of Bacillus subtilis. J Bacteriol (2002) 1.48
PePPER: a webserver for prediction of prokaryote promoter elements and regulons. BMC Genomics (2012) 1.47
NisT, the transporter of the lantibiotic nisin, can transport fully modified, dehydrated, and unmodified prenisin and fusions of the leader peptide with non-lantibiotic peptides. J Biol Chem (2004) 1.47
Dissection and modulation of the four distinct activities of nisin by mutagenesis of rings A and B and by C-terminal truncation. Appl Environ Microbiol (2007) 1.46
The cop operon is required for copper homeostasis and contributes to virulence in Streptococcus pneumoniae. Mol Microbiol (2011) 1.46
AcmA of Lactococcus lactis is an N-acetylglucosaminidase with an optimal number of LysM domains for proper functioning. FEBS J (2005) 1.45
To have neighbour's fare: extending the molecular toolbox for Streptococcus pneumoniae. Microbiology (2006) 1.45
Temporal separation of distinct differentiation pathways by a dual specificity Rap-Phr system in Bacillus subtilis. Mol Microbiol (2007) 1.44
Overview on sugar metabolism and its control in Lactococcus lactis - the input from in vivo NMR. FEMS Microbiol Rev (2005) 1.44
Live Cell Imaging of Bacillus subtilis and Streptococcus pneumoniae using Automated Time-lapse Microscopy. J Vis Exp (2011) 1.43
Copper stress affects iron homeostasis by destabilizing iron-sulfur cluster formation in Bacillus subtilis. J Bacteriol (2010) 1.40
Genetic features of circular bacteriocins produced by Gram-positive bacteria. FEMS Microbiol Rev (2007) 1.39
Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases. Bioinformatics (2004) 1.38
Projector: automatic contig mapping for gap closure purposes. Nucleic Acids Res (2003) 1.38
Production of dehydroamino acid-containing peptides by Lactococcus lactis. Appl Environ Microbiol (2007) 1.36
LmrCD is a major multidrug resistance transporter in Lactococcus lactis. Mol Microbiol (2006) 1.34
Probing direct interactions between CodY and the oppD promoter of Lactococcus lactis. J Bacteriol (2005) 1.29
Cell envelope stress induced by the bacteriocin Lcn972 is sensed by the Lactococcal two-component system CesSR. Mol Microbiol (2007) 1.28
ArgR and AhrC are both required for regulation of arginine metabolism in Lactococcus lactis. J Bacteriol (2004) 1.27
Development of genomic array footprinting for identification of conditionally essential genes in Streptococcus pneumoniae. Appl Environ Microbiol (2007) 1.26
Bet hedging or not? A guide to proper classification of microbial survival strategies. Bioessays (2011) 1.26
Mechanisms and evolution of control logic in prokaryotic transcriptional regulation. Microbiol Mol Biol Rev (2009) 1.25
Transcriptome analysis of temporal regulation of carbon metabolism by CcpA in Bacillus subtilis reveals additional target genes. J Mol Microbiol Biotechnol (2007) 1.25
Transcriptome analysis and related databases of Lactococcus lactis. Antonie Van Leeuwenhoek (2002) 1.25