Published in Protein Expr Purif on October 04, 2005
Structure and flexibility within proteins as identified through small angle X-ray scattering. Gen Physiol Biophys (2009) 3.24
In vivo structure of the E. coli FtsZ-ring revealed by photoactivated localization microscopy (PALM). PLoS One (2010) 2.10
Structural basis for ligand and heparin binding to neuropilin B domains. Proc Natl Acad Sci U S A (2007) 1.66
Structure of a heparin-dependent complex of Hedgehog and Ihog. Proc Natl Acad Sci U S A (2006) 1.47
The mode of Hedgehog binding to Ihog homologues is not conserved across different phyla. Nature (2008) 1.47
The Staphylococcus aureus extracellular adherence protein (Eap) adopts an elongated but structured conformation in solution. Protein Sci (2007) 1.18
Suppression of experimental autoimmune encephalomyelitis by extracellular adherence protein of Staphylococcus aureus. J Exp Med (2006) 1.17
In vitro enzymatic characterization of near full length EGFR in activated and inhibited states. Biochemistry (2009) 1.16
A molecular insight into complement evasion by the staphylococcal complement inhibitor protein family. J Immunol (2009) 1.16
Self-organization of keratin intermediate filaments into cross-linked networks. J Cell Biol (2009) 1.12
Kinetic and structural studies on interactions between heparin or heparan sulfate and proteins of the hedgehog signaling pathway. Biochemistry (2007) 1.10
Identification of the bile salt binding site on IpaD from Shigella flexneri and the influence of ligand binding on IpaD structure. Proteins (2012) 1.05
Crystal structures of Staphylococcus epidermidis mevalonate diphosphate decarboxylase bound to inhibitory analogs reveal new insight into substrate binding and catalysis. J Biol Chem (2011) 1.03
A wound-induced keratin inhibits Src activity during keratinocyte migration and tissue repair. J Cell Biol (2012) 1.01
NMR characterization of the interaction of the Salmonella type III secretion system protein SipD and bile salts. Biochemistry (2010) 1.01
Structure of the protein core of the glypican Dally-like and localization of a region important for hedgehog signaling. Proc Natl Acad Sci U S A (2011) 1.00
Binding affects the tertiary and quaternary structures of the Shigella translocator protein IpaB and its chaperone IpgC. Biochemistry (2012) 0.99
The Hantavirus Glycoprotein G1 Tail Contains Dual CCHC-type Classical Zinc Fingers. J Biol Chem (2009) 0.99
Diversity in the C3b [corrected] contact residues and tertiary structures of the staphylococcal complement inhibitor (SCIN) protein family. J Biol Chem (2011) 0.96
Structural characterization of the Crimean-Congo hemorrhagic fever virus Gn tail provides insight into virus assembly. J Biol Chem (2011) 0.95
Accurate construction of photoactivated localization microscopy (PALM) images for quantitative measurements. PLoS One (2012) 0.92
Evidence for alternative quaternary structure in a bacterial Type III secretion system chaperone. BMC Struct Biol (2010) 0.92
The extracellular adherence protein from Staphylococcus aureus inhibits the classical and lectin pathways of complement by blocking formation of the C3 proconvertase. J Immunol (2014) 0.88
Biochemical and structural basis for inhibition of Enterococcus faecalis hydroxymethylglutaryl-CoA synthase, mvaS, by hymeglusin. Biochemistry (2012) 0.88
Crystallization of human complement component C3b in the presence of a staphylococcal complement-inhibitor protein (SCIN). Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.88
The Salmonella type III secretion system inner rod protein PrgJ is partially folded. J Biol Chem (2012) 0.88
The Structure of the Hantavirus Zinc Finger Domain is Conserved and Represents the Only Natively Folded Region of the Gn Cytoplasmic Tail. Front Microbiol (2011) 0.87
Structure of the Yersinia pestis tip protein LcrV refined to 1.65 Å resolution. Acta Crystallogr Sect F Struct Biol Cryst Commun (2013) 0.85
MAP1272c encodes an NlpC/P60 protein, an antigen detected in cattle with Johne's disease. Clin Vaccine Immunol (2012) 0.82
Catabolite control protein E (CcpE) is a LysR-type transcriptional regulator of tricarboxylic acid cycle activity in Staphylococcus aureus. J Biol Chem (2013) 0.82
The DOCK protein sponge binds to ELMO and functions in Drosophila embryonic CNS development. PLoS One (2011) 0.82
A structurally dynamic N-terminal helix is a key functional determinant in staphylococcal complement inhibitor (SCIN) proteins. J Biol Chem (2012) 0.81
Borrelia burgdorferi BBK32 Inhibits the Classical Pathway by Blocking Activation of the C1 Complement Complex. PLoS Pathog (2016) 0.80
Novel Evasion Mechanisms of the Classical Complement Pathway. J Immunol (2016) 0.80
Hypothetical protein CT398 (CdsZ) interacts with σ(54) (RpoN)-holoenzyme and the type III secretion export apparatus in Chlamydia trachomatis. Protein Sci (2015) 0.78
Characterization of the Shigella and Salmonella Type III Secretion System Tip-Translocon Protein-Protein Interaction by Paramagnetic Relaxation Enhancement. Chembiochem (2016) 0.78
Structural and biochemical characterization of Chlamydia trachomatis hypothetical protein CT263 supports that menaquinone synthesis occurs through the futalosine pathway. J Biol Chem (2014) 0.78
Identification of peptidic inhibitors of the alternative complement pathway based on Staphylococcus aureus SCIN proteins. Mol Immunol (2015) 0.77
Crystallization and X-ray diffraction analysis of the complement component-3 (C3) inhibitory domain of Efb from Staphylococcus aureus. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.76
Attenuation of Staphylococcus aureus-Induced Bacteremia by Human Mini-Antibodies Targeting the Complement Inhibitory Protein Efb. J Immunol (2015) 0.76
NlpC/P60 domain-containing proteins of Mycobacterium avium subspecies paratuberculosis that differentially bind and hydrolyze peptidoglycan. Protein Sci (2016) 0.76
Detergent-solubilized Patched purified from Sf9 cells fails to interact strongly with cognate Hedgehog or Ihog homologs. Protein Expr Purif (2014) 0.76
Chlamydia trachomatis CT771 (nudH) is an asymmetric Ap4A hydrolase. Biochemistry (2013) 0.75
Identification of C3b-Binding Small-Molecule Complement Inhibitors Using Cheminformatics. J Immunol (2017) 0.75
Characterization of the Binding of Hydroxyindole, Indoleacetic acid, and Morpholinoaniline to the Salmonella Type III Secretion System Proteins SipD and SipB. ChemMedChem (2016) 0.75
NMR identification of the binding surfaces involved in the Salmonella and Shigella Type III secretion tip-translocon protein-protein interactions. Proteins (2016) 0.75
The LcrG Tip Chaperone Protein of the Yersinia pestis Type III Secretion System Is Partially Folded. J Mol Biol (2015) 0.75
Nuclear Magnetic Resonance Characterization of the Type III Secretion System Tip Chaperone Protein PcrG of Pseudomonas aeruginosa. Biochemistry (2015) 0.75
Enterotoxigenic Escherichia coli Flagellin Inhibits TNF-Induced NF-κB Activation in Intestinal Epithelial Cells. Pathogens (2017) 0.75
The structural basis for inhibition of the classical and lectin complement pathways by S. Aureus extracellular adherence protein. Protein Sci (2017) 0.75
(1)H, (15)N, and (13)C resonance assignments of Staphylococcus aureus extracellular adherence protein domain 4. Biomol NMR Assign (2016) 0.75
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol (2009) 235.12
Metagenomic analysis of the human distal gut microbiome. Science (2006) 29.76
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Res (2012) 11.33
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature (2003) 10.38
Searching for SNPs with cloud computing. Genome Biol (2009) 10.12
Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis. Science (2002) 9.83
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature (2002) 8.92
Statistical methods for detecting differentially abundant features in clinical metagenomic samples. PLoS Comput Biol (2009) 8.06
ARDB--Antibiotic Resistance Genes Database. Nucleic Acids Res (2008) 7.82
Minimus: a fast, lightweight genome assembler. BMC Bioinformatics (2007) 7.65
The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science (2005) 7.61
The dog genome: survey sequencing and comparative analysis. Science (2003) 5.84
The genome of the protist parasite Entamoeba histolytica. Nature (2005) 5.33
Draft genome of the filarial nematode parasite Brugia malayi. Science (2007) 5.28
Genome assembly forensics: finding the elusive mis-assembly. Genome Biol (2008) 4.91
Differential abundance analysis for microbial marker-gene surveys. Nat Methods (2013) 4.49
Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biol (2005) 4.42
Next generation sequence assembly with AMOS. Curr Protoc Bioinformatics (2011) 3.60
Assembly complexity of prokaryotic genomes using short reads. BMC Bioinformatics (2010) 3.45
Exploiting sparseness in de novo genome assembly. BMC Bioinformatics (2012) 2.88
Figaro: a novel statistical method for vector sequence removal. Bioinformatics (2008) 2.81
Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation. Proc Natl Acad Sci U S A (2011) 2.62
Scaffolding and validation of bacterial genome assemblies using optical restriction maps. Bioinformatics (2008) 2.61
Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences. BMC Genomics (2011) 2.55
Bambus 2: scaffolding metagenomes. Bioinformatics (2011) 2.24
Parametric complexity of sequence assembly: theory and applications to next generation sequencing. J Comput Biol (2009) 2.10
Sequence assembly demystified. Nat Rev Genet (2013) 2.09
Alignment and clustering of phylogenetic markers--implications for microbial diversity studies. BMC Bioinformatics (2010) 2.01
Deep sequencing of the oral microbiome reveals signatures of periodontal disease. PLoS One (2012) 1.96
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline. Genome Biol (2013) 1.74
Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. Brief Bioinform (2011) 1.70
DNACLUST: accurate and efficient clustering of phylogenetic marker genes. BMC Bioinformatics (2011) 1.66
Genomic characterization of the Yersinia genus. Genome Biol (2010) 1.63
Automated ensemble assembly and validation of microbial genomes. BMC Bioinformatics (2014) 1.33
Characterization of Ehp, a secreted complement inhibitory protein from Staphylococcus aureus. J Biol Chem (2007) 1.32
Finishing genomes with limited resources: lessons from an ensemble of microbial genomes. BMC Genomics (2010) 1.31
Quantitative PCR for detection of Shigella improves ascertainment of Shigella burden in children with moderate-to-severe diarrhea in low-income countries. J Clin Microbiol (2013) 1.30
A single ligand is sufficient to activate EGFR dimers. Proc Natl Acad Sci U S A (2012) 1.24
Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition. Genome Biol (2014) 1.24
Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering. Nucleic Acids Res (2011) 1.17
Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biol (2005) 1.16
Finding biologically accurate clusterings in hierarchical tree decompositions using the variation of information. J Comput Biol (2010) 1.15
Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies. BMC Bioinformatics (2011) 1.13
NFAT binding and regulation of T cell activation by the cytoplasmic scaffolding Homer proteins. Science (2008) 1.12
A complex between contactin-1 and the protein tyrosine phosphatase PTPRZ controls the development of oligodendrocyte precursor cells. Proc Natl Acad Sci U S A (2011) 1.09
De novo likelihood-based measures for comparing genome assemblies. BMC Res Notes (2013) 1.07
AGORA: Assembly Guided by Optical Restriction Alignment. BMC Bioinformatics (2012) 1.06
Contactin 4 as an autism susceptibility locus. Autism Res (2011) 1.05
Sequencing and genome assembly using next-generation technologies. Methods Mol Biol (2010) 1.05
3-day treatment with azithromycin 1.5% eye drops versus 7-day treatment with tobramycin 0.3% for purulent bacterial conjunctivitis: multicentre, randomised and controlled trial in adults and children. Br J Ophthalmol (2006) 1.04
Receptor protein tyrosine phosphatases and cancer: new insights from structural biology. Cell Adh Migr (2012) 1.00
MetaPath: identifying differentially abundant metabolic pathways in metagenomic datasets. BMC Proc (2011) 1.00
Bioinformatics for the Human Microbiome Project. PLoS Comput Biol (2012) 0.97
Contactins: structural aspects in relation to developmental functions in brain disease. Adv Protein Chem Struct Biol (2011) 0.93
Identification of Coli Surface Antigen 23, a novel adhesin of enterotoxigenic Escherichia coli. Infect Immun (2012) 0.92
Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700. J Bacteriol (2009) 0.88
Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold. Bioinformatics (2013) 0.88
Survey of culture, goldengate assay, universal biosensor assay, and 16S rRNA Gene sequencing as alternative methods of bacterial pathogen detection. J Clin Microbiol (2013) 0.87
The ErbB4 extracellular region retains a tethered-like conformation in the absence of the tether. Protein Sci (2011) 0.87
The immunoglobulin-like domains 1 and 2 of the protein tyrosine phosphatase LAR adopt an unusual horseshoe-like conformation. J Mol Biol (2011) 0.86
Developmental roles of tribbles protein family members. Dev Dyn (2012) 0.86
Receptor-type tyrosine phosphatase ligands: looking for the needle in the haystack. FEBS J (2012) 0.86
The Theory and Practice of Genome Sequence Assembly. Annu Rev Genomics Hum Genet (2015) 0.85
Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products. BMC Genomics (2014) 0.84
Microbiota that affect risk for shigellosis in children in low-income countries. Emerg Infect Dis (2015) 0.84
Noncanonical FK506-binding protein BDBT binds DBT to enhance its circadian function and forms foci at night. Neuron (2013) 0.82
Inexact Local Alignment Search over Suffix Arrays. Proceedings (IEEE Int Conf Bioinformatics Biomed) (2009) 0.81
The kinase domain of Drosophila Tribbles is required for turnover of fly C/EBP during cell migration. Dev Biol (2013) 0.81
New insights into the roles of the contactin cell adhesion molecules in neural development. Adv Neurobiol (2014) 0.79
Genome Sequencing of Four Strains of Rickettsia prowazekii, the Causative Agent of Epidemic Typhus, Including One Flying Squirrel Isolate. Genome Announc (2013) 0.77
Comparison of 360-Degree Circumferential Trabeculotomy and Conventional Trabeculotomy in Primary Pediatric Glaucoma Surgery: Part 1. J Pediatr Ophthalmol Strabismus (2016) 0.75
[Importance of asferic treatment of intraocular lenses in contrast sensitivity of the human eye]. Oftalmologia (2014) 0.75
This special issue includes a selection of papers presented at the 2nd IEEE International Conference. Introduction. Int J Bioinform Res Appl (2014) 0.75
Protein tyrosine phosphatases. Semin Cell Dev Biol (2015) 0.75
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes. Brief Bioinform (2017) 0.75