Published in J Mol Biol on April 06, 2006
Annotation error in public databases: misannotation of molecular function in enzyme superfamilies. PLoS Comput Biol (2009) 4.76
Bacteriophage adhering to mucus provide a non-host-derived immunity. Proc Natl Acad Sci U S A (2013) 3.86
Comparative genomic analysis of 60 Mycobacteriophage genomes: genome clustering, gene acquisition, and gene size. J Mol Biol (2010) 3.12
The phage lambda major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion system. Proc Natl Acad Sci U S A (2009) 3.03
Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution. PLoS One (2011) 2.29
A common evolutionary origin for tailed-bacteriophage functional modules and bacterial machineries. Microbiol Mol Biol Rev (2011) 1.92
Going viral: next-generation sequencing applied to phage populations in the human gut. Nat Rev Microbiol (2012) 1.89
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes. Nat Commun (2014) 1.88
Structure of bacteriophage SPP1 tail reveals trigger for DNA ejection. EMBO J (2007) 1.81
Complete genome of the broad-host-range Erwinia amylovora phage phiEa21-4 and its relationship to Salmonella phage felix O1. Appl Environ Microbiol (2009) 1.67
Hypervariable loci in the human gut virome. Proc Natl Acad Sci U S A (2012) 1.58
P22 coat protein structures reveal a novel mechanism for capsid maturation: stability without auxiliary proteins or chemical crosslinks. Structure (2010) 1.44
Insight into DNA and protein transport in double-stranded DNA viruses: the structure of bacteriophage N4. J Mol Biol (2008) 1.39
'Let the phage do the work': using the phage P22 coat protein structures as a framework to understand its folding and assembly mutants. Virology (2010) 1.32
Lateral genetic transfer: open issues. Philos Trans R Soc Lond B Biol Sci (2009) 1.29
Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph. Sci Rep (2012) 1.28
Genomic and proteomic analysis of phiEco32, a novel Escherichia coli bacteriophage. J Mol Biol (2008) 1.21
Genomic and proteomic characterization of the broad-host-range Salmonella phage PVP-SE1: creation of a new phage genus. J Virol (2011) 1.17
Structure of the three N-terminal immunoglobulin domains of the highly immunogenic outer capsid protein from a T4-like bacteriophage. J Virol (2011) 1.10
Pervasive domestication of defective prophages by bacteria. Proc Natl Acad Sci U S A (2014) 1.04
Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes. J Virol (2013) 1.01
Functional genomic analysis of two Staphylococcus aureus phages isolated from the dairy environment. Appl Environ Microbiol (2009) 1.00
In silico and in vivo evaluation of bacteriophage phiEF24C, a candidate for treatment of Enterococcus faecalis infections. Appl Environ Microbiol (2008) 0.99
Structures and host-adhesion mechanisms of lactococcal siphophages. Front Microbiol (2014) 0.95
Artificial neural networks trained to detect viral and phage structural proteins. PLoS Comput Biol (2012) 0.95
S-layer homology domain proteins Csac_0678 and Csac_2722 are implicated in plant polysaccharide deconstruction by the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus. Appl Environ Microbiol (2011) 0.92
Brochothrix thermosphacta bacteriophages feature heterogeneous and highly mosaic genomes and utilize unique prophage insertion sites. J Bacteriol (2010) 0.92
Functional analysis of the highly antigenic outer capsid protein, Hoc, a virus decoration protein from T4-like bacteriophages. Mol Microbiol (2010) 0.91
A New Zealand Black-derived locus suppresses chronic graft-versus-host disease and autoantibody production through nonlymphoid bone marrow-derived cells. J Immunol (2011) 0.88
Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters. Proc Natl Acad Sci U S A (2015) 0.87
Innate and acquired bacteriophage-mediated immunity. Bacteriophage (2013) 0.87
Novel giant siphovirus from Bacillus anthracis features unusual genome characteristics. PLoS One (2014) 0.86
Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB. Front Microbiol (2017) 0.85
Novel Podoviridae family bacteriophage infecting Weissella cibaria isolated from Kimchi. Appl Environ Microbiol (2012) 0.84
Comparative genomics and functional analysis of the 936 group of lactococcal Siphoviridae phages. Sci Rep (2016) 0.83
Structural and functional studies of gpX of Escherichia coli phage P2 reveal a widespread role for LysM domains in the baseplates of contractile-tailed phages. J Bacteriol (2013) 0.83
Analysis of the First Temperate Broad Host Range Brucellaphage (BiPBO1) Isolated from B. inopinata. Front Microbiol (2016) 0.82
Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use. Nucleic Acids Res (2016) 0.82
Structural and dynamic properties that govern the stability of an engineered fibronectin type III domain. Protein Eng Des Sel (2015) 0.80
Structural and biochemical characterization of phage λ FI protein (gpFI) reveals a novel mechanism of DNA packaging chaperone activity. J Biol Chem (2012) 0.79
Cryo-electron microscopy structure of lactococcal siphophage 1358 virion. J Virol (2014) 0.78
Complete Genome of Bacillus pumilus Siphophage Blastoid. Genome Announc (2013) 0.78
Capsomer dynamics and stabilization in the T = 12 marine bacteriophage SIO-2 and its procapsid studied by CryoEM. Structure (2012) 0.78
A metagenomic approach to characterize temperate bacteriophage populations from Cystic Fibrosis and non-Cystic Fibrosis bronchiectasis patients. Front Microbiol (2015) 0.78
Recombinant production and characterization of full-length and truncated β-1,3-glucanase PglA from Paenibacillus sp. S09. BMC Biotechnol (2013) 0.77
Identification of tail genes in the temperate phage 16-3 of Sinorhizobium meliloti 41. J Bacteriol (2010) 0.77
A shifty stop for a hairy tail. Mol Microbiol (2008) 0.76
Complete Genome of Acinetobacter baumannii N4-Like Podophage Presley. Genome Announc (2013) 0.76
Structural features of interfacial tyrosine residue in ROBO1 fibronectin domain-antibody complex: Crystallographic, thermodynamic, and molecular dynamic analyses. Protein Sci (2015) 0.76
The Presence of Two Receptor-Binding Proteins Contributes to the Wide Host Range of Staphylococcal Twort-Like Phages. Appl Environ Microbiol (2016) 0.75
Structural proteins of Enterococcus faecalis bacteriophage ϕEf11. Bacteriophage (2016) 0.75
Viruses and the origin of microbiome selection and immunity. ISME J (2016) 0.75
Complete Genome of Clavibacter michiganensis subsp. sepedonicusis Siphophage CN1A. Genome Announc (2013) 0.75
Ultrastructure and Viral Metagenome of Bacteriophages from an Anaerobic Methane Oxidizing Methylomirabilis Bioreactor Enrichment Culture. Front Microbiol (2016) 0.75
Genetic characterization of ØVC8 lytic phage for Vibrio cholerae O1. Virol J (2016) 0.75
High affinity anchoring of the decoration protein pb10 onto the bacteriophage T5 capsid. Sci Rep (2017) 0.75
Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. Nature (2012) 3.40
The phage lambda major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion system. Proc Natl Acad Sci U S A (2009) 3.03
Low-populated folding intermediates of Fyn SH3 characterized by relaxation dispersion NMR. Nature (2004) 2.84
Initiation of actinorhodin export in Streptomyces coelicolor. Mol Microbiol (2007) 2.58
Spatially controlled simultaneous patterning of multiple growth factors in three-dimensional hydrogels. Nat Mater (2011) 2.54
The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages. J Bacteriol (2012) 2.22
Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins. Protein Sci (2005) 1.91
Vascular COX-2 modulates blood pressure and thrombosis in mice. Sci Transl Med (2012) 1.71
Hydrophobic core packing in the SH3 domain folding transition state. Nat Struct Biol (2002) 1.59
A new group of phage anti-CRISPR genes inhibits the type I-E CRISPR-Cas system of Pseudomonas aeruginosa. MBio (2014) 1.57
Cardiomyocyte cyclooxygenase-2 influences cardiac rhythm and function. Proc Natl Acad Sci U S A (2009) 1.41
The structure of "unstructured" regions in peptides and proteins: role of the polyproline II helix in protein folding and recognition. Biopolymers (2005) 1.40
Theoretical and experimental demonstration of the importance of specific nonnative interactions in protein folding. Proc Natl Acad Sci U S A (2008) 1.38
Immunoglobulin-like domains on bacteriophage: weapons of modest damage? Curr Opin Microbiol (2007) 1.33
Protein folding kinetics beyond the phi value: using multiple amino acid substitutions to investigate the structure of the SH3 domain folding transition state. J Mol Biol (2002) 1.28
The induction of folding cooperativity by ligand binding drives the allosteric response of tetracycline repressor. Proc Natl Acad Sci U S A (2009) 1.28
Identification of a collapsed intermediate with non-native long-range interactions on the folding pathway of a pair of Fyn SH3 domain mutants by NMR relaxation dispersion spectroscopy. J Mol Biol (2006) 1.26
Protein-protein interaction affinity plays a crucial role in controlling the Sho1p-mediated signal transduction pathway in yeast. Mol Cell (2004) 1.24
A comprehensive analysis of structural and sequence conservation in the TetR family transcriptional regulators. J Mol Biol (2010) 1.21
Dramatic acceleration of protein folding by stabilization of a nonnative backbone conformation. Proc Natl Acad Sci U S A (2004) 1.19
Activated T cell exosomes promote tumor invasion via Fas signaling pathway. J Immunol (2012) 1.19
The family feud: do proteins with similar structures fold via the same pathway? Curr Opin Struct Biol (2005) 1.18
Proteome-wide discovery of evolutionary conserved sequences in disordered regions. Sci Signal (2012) 1.15
miR-19a acts as an oncogenic microRNA and is up-regulated in bladder cancer. J Exp Clin Cancer Res (2014) 1.12
Comparison of self- and conventional-ligating brackets in the alignment stage. Eur J Orthod (2012) 1.09
Long noncontractile tail machines of bacteriophages. Adv Exp Med Biol (2012) 1.08
The analysis of protein folding kinetic data produced in protein engineering experiments. Methods (2004) 1.07
The relationship between conservation, thermodynamic stability, and function in the SH3 domain hydrophobic core. J Mol Biol (2003) 1.07
The crystal structure of bacteriophage HK97 gp6: defining a large family of head-tail connector proteins. J Mol Biol (2009) 1.07
The biologically relevant targets and binding affinity requirements for the function of the yeast actin-binding protein 1 Src-homology 3 domain vary with genetic context. Genetics (2007) 1.05
Targeted deletions of cyclooxygenase-2 and atherogenesis in mice. Circulation (2010) 1.04
Crystal structure of bacteriophage lambda cII and its DNA complex. Mol Cell (2005) 1.04
The solution structure of the C-terminal Ig-like domain of the bacteriophage λ tail tube protein. J Mol Biol (2010) 1.04
Residues participating in the protein folding nucleus do not exhibit preferential evolutionary conservation. J Mol Biol (2002) 1.02
The solution structure of the bacteriophage lambda head-tail joining protein, gpFII. J Mol Biol (2002) 1.02
Microsomal prostaglandin e2 synthase-1 modulates the response to vascular injury. Circulation (2011) 1.01
Computational design of the Fyn SH3 domain with increased stability through optimization of surface charge charge interactions. Protein Sci (2007) 1.01
Structure-based approach to the photocontrol of protein folding. J Am Chem Soc (2009) 1.01
Phi-value analysis of a three-state protein folding pathway by NMR relaxation dispersion spectroscopy. Proc Natl Acad Sci U S A (2007) 1.00
Correlation between 2H NMR side-chain order parameters and sequence conservation in globular proteins. J Am Chem Soc (2003) 0.99
Extraction of extracellular polymeric substances from the photosynthetic bacterium Rhodopseudomonas acidophila. Appl Microbiol Biotechnol (2004) 0.98
Immunosuppressive exosomes from TGF-β1 gene-modified dendritic cells attenuate Th17-mediated inflammatory autoimmune disease by inducing regulatory T cells. Cell Res (2011) 0.98
HNH proteins are a widespread component of phage DNA packaging machines. Proc Natl Acad Sci U S A (2014) 0.98
Differential dynamic engagement within 24 SH3 domain: peptide complexes revealed by co-linear chemical shift perturbation analysis. PLoS One (2012) 0.97
The protein gp74 from the bacteriophage HK97 functions as a HNH endonuclease. Protein Sci (2012) 0.95
Abp1p and Fyn SH3 domains fold through similar low-populated intermediate states. Biochemistry (2006) 0.95
Structural, functional, and bioinformatic studies demonstrate the crucial role of an extended peptide binding site for the SH3 domain of yeast Abp1p. J Biol Chem (2009) 0.94
Ligand recognition by ActR, a TetR-like regulator of actinorhodin export. J Mol Biol (2008) 0.93
Phages have adapted the same protein fold to fulfill multiple functions in virion assembly. Proc Natl Acad Sci U S A (2010) 0.92
The NMR structure of the gpU tail-terminator protein from bacteriophage lambda: identification of sites contributing to Mg(II)-mediated oligomerization and biological function. J Mol Biol (2006) 0.92
Inbred Chinese Wuzhishan (WZS) minipig model for soybean glycinin and beta-conglycinin allergy. J Agric Food Chem (2010) 0.91
The bacteriophage HK97 gp15 moron element encodes a novel superinfection exclusion protein. J Bacteriol (2012) 0.91
Two-way interdomain signal transduction in tetracycline repressor. J Mol Biol (2006) 0.91
Insights into bacteriophage T5 structure from analysis of its morphogenesis genes and protein components. J Virol (2013) 0.91
Recognition of non-canonical peptides by the yeast Fus1p SH3 domain: elucidation of a common mechanism for diverse SH3 domain specificities. J Mol Biol (2008) 0.90
When a virus is not a parasite: the beneficial effects of prophages on bacterial fitness. J Microbiol (2014) 0.89
Transcriptional analysis of a Dehalococcoides-containing microbial consortium reveals prophage activation. Appl Environ Microbiol (2011) 0.87
microRNA-99a acts as a tumor suppressor and is down-regulated in bladder cancer. BMC Urol (2014) 0.87
Protein stabilization by specific binding of guanidinium to a functional arginine-binding surface on an SH3 domain. Protein Sci (2006) 0.86
The moron comes of age. Bacteriophage (2012) 0.86
Protein folding kinetics provides a context-independent assessment of beta-strand propensity in the Fyn SH3 domain. J Mol Biol (2007) 0.86
Specialized microbial databases for inductive exploration of microbial genome sequences. BMC Genomics (2005) 0.85
Investigation of transcription repression and small-molecule responsiveness by TetR-like transcription factors using a heterologous Escherichia coli-based assay. J Bacteriol (2007) 0.85
Kinetic consequences of native state optimization of surface-exposed electrostatic interactions in the Fyn SH3 domain. Proteins (2011) 0.85
The phage tail tape measure protein, an inner membrane protein and a periplasmic chaperone play connected roles in the genome injection process of E. coli phage HK97. Mol Microbiol (2015) 0.83
Structural and functional studies of gpX of Escherichia coli phage P2 reveal a widespread role for LysM domains in the baseplates of contractile-tailed phages. J Bacteriol (2013) 0.83
A Conserved residue in the yeast Bem1p SH3 domain maintains the high level of binding specificity required for function. J Biol Chem (2011) 0.82
Disruption of a salt bridge dramatically accelerates subunit exchange in duck delta2 crystallin. J Biol Chem (2004) 0.82
Tail tip proteins related to bacteriophage λ gpL coordinate an iron-sulfur cluster. J Mol Biol (2013) 0.81
Effects of 90-day feeding of transgenic Bt rice TT51 on the reproductive system in male rats. Food Chem Toxicol (2013) 0.81
The osmolyte trimethylamine-N-oxide stabilizes the Fyn SH3 domain without altering the structure of its folding transition state. Protein Sci (2009) 0.81
A conserved spiral structure for highly diverged phage tail assembly chaperones. J Mol Biol (2013) 0.81
Evidence does not support absorption of intact solid lipid nanoparticles via oral delivery. Nanoscale (2016) 0.80
The importance of conserved features of yeast actin-binding protein 1 (Abp1p): the conditional nature of essentiality. Genetics (2012) 0.80
Synthesis of [3β-acetoxy-urs-12-en-28-oyl]-1-monoglyceride and investigation on its anti tumor effects against BGC-823. Bioorg Med Chem (2011) 0.80
The solution structures of two prophage homologues of the bacteriophage λ Ea8.5 protein reveal a newly discovered hybrid homeodomain/zinc-finger fold. Biochemistry (2013) 0.80
Yeast adaptor protein, Nbp2p, is conserved regulator of fungal Ptc1p phosphatases and is involved in multiple signaling pathways. J Biol Chem (2012) 0.79
A residue in helical conformation in the native state adopts a β-strand conformation in the folding transition state despite its high and canonical Φ-value. Proteins (2012) 0.79
Structural and biochemical characterization of phage λ FI protein (gpFI) reveals a novel mechanism of DNA packaging chaperone activity. J Biol Chem (2012) 0.79
Assembly mechanism is the key determinant of the dosage sensitivity of a phage structural protein. Proc Natl Acad Sci U S A (2011) 0.78
Developmental expression and function of DKKL1/Dkkl1 in humans and mice. Reprod Biol Endocrinol (2012) 0.78