Published in J Biol Chem on July 12, 2006
Genome-wide analysis of chromatin regulation by cocaine reveals a role for sirtuins. Neuron (2009) 2.97
Imipramine treatment and resiliency exhibit similar chromatin regulation in the mouse nucleus accumbens in depression models. J Neurosci (2009) 2.18
The ubiquitin-proteasome system of Saccharomyces cerevisiae. Genetics (2012) 1.73
Ubiquitin and proteasomes in transcription. Annu Rev Biochem (2012) 1.67
The role of the proteasomal ATPases and activator monoubiquitylation in regulating Gal4 binding to promoters. Genes Dev (2006) 1.32
Revisiting the COP9 signalosome as a transcriptional regulator. EMBO Rep (2009) 1.24
SUMO functions in constitutive transcription and during activation of inducible genes in yeast. Genes Dev (2010) 1.20
No Splicing, no dicing: non-proteolytic roles of the ubiquitin-proteasome system in transcription. J Biol Chem (2009) 1.14
Physical and functional interactions of monoubiquitylated transactivators with the proteasome. J Biol Chem (2008) 1.08
Label transfer chemistry for the characterization of protein-protein interactions. J Am Chem Soc (2007) 1.07
Proteasome activity modulates chromatin modifications and RNA polymerase II phosphorylation to enhance glucocorticoid receptor-mediated transcription. Mol Cell Biol (2007) 1.04
Regulation of acetylation at the major histocompatibility complex class II proximal promoter by the 19S proteasomal ATPase Sug1. Mol Cell Biol (2008) 1.00
Distinct regulatory mechanisms of eukaryotic transcriptional activation by SAGA and TFIID. Biochim Biophys Acta (2010) 0.97
Activation domain-dependent monoubiquitylation of Gal4 protein is essential for promoter binding in vivo. J Biol Chem (2008) 0.96
Cks1, Cdk1, and the 19S proteasome collaborate to regulate gene induction-dependent nucleosome eviction in yeast. Mol Cell Biol (2010) 0.95
The 19S proteasome subcomplex promotes the targeting of NuA4 HAT to the promoters of ribosomal protein genes to facilitate the recruitment of TFIID for transcriptional initiation in vivo. Nucleic Acids Res (2011) 0.94
The 19 s proteasome subcomplex establishes a specific protein interaction network at the promoter for stimulated transcriptional initiation in vivo. J Biol Chem (2009) 0.93
Regulation of gene expression by the ubiquitin-proteasome system. Semin Cell Dev Biol (2012) 0.89
Drosophila COP9 signalosome subunit 7 interacts with multiple genomic loci to regulate development. Nucleic Acids Res (2014) 0.89
Intersection of nuclear receptors and the proteasome on the epigenetic landscape. Environ Mol Mutagen (2008) 0.85
The role of proteasome beta subunits in gastrin-mediated transcription of plasminogen activator inhibitor-2 and regenerating protein1. PLoS One (2013) 0.83
The hydrophobic patch of ubiquitin is required to protect transactivator-promoter complexes from destabilization by the proteasomal ATPases. Nucleic Acids Res (2009) 0.80
Synergistic effects of TOR and proteasome pathways on the yeast transcriptome and cell growth. Open Biol (2013) 0.80
Emerging roles of the 26S proteasome in nuclear hormone receptor-regulated transcription. Biochim Biophys Acta (2010) 0.79
The 26S proteasome and initiation of gene transcription. Biomolecules (2014) 0.79
Distant positioning of proteasomal proteolysis relative to actively transcribed genes. Nucleic Acids Res (2011) 0.78
The Rad23 ubiquitin receptor, the proteasome and functional specificity in transcriptional control. Transcription (2012) 0.78
Functions of the proteasome on chromatin. Biomolecules (2014) 0.76
Degradation of DNA damage-independently stalled RNA polymerase II is independent of the E3 ligase Elc1. Nucleic Acids Res (2014) 0.76
Degradation, Promoter Recruitment and Transactivation Mediated by the Extreme N-Terminus of MHC Class II Transactivator CIITA Isoform III. PLoS One (2016) 0.76
High hydrostatic pressure activates transcription factors involved in Saccharomyces cerevisiae stress tolerance. Curr Pharm Biotechnol (2012) 0.75
Recruitment of a 19S proteasome subcomplex to an activated promoter. Science (2002) 4.01
The temporal expression profile of Mycobacterium tuberculosis infection in mice. Proc Natl Acad Sci U S A (2004) 3.63
Identification of candidate IgG biomarkers for Alzheimer's disease via combinatorial library screening. Cell (2011) 3.01
Genomic DNA standards for gene expression profiling in Mycobacterium tuberculosis. Nucleic Acids Res (2002) 2.94
Isolation of protein ligands from large peptoid libraries. J Am Chem Soc (2003) 2.80
A peptoid "antibody surrogate" that antagonizes VEGF receptor 2 activity. J Am Chem Soc (2008) 2.47
Microwave-assisted solid-phase synthesis of peptoids. Org Lett (2002) 1.81
Seamless bead to microarray screening: rapid identification of the highest affinity protein ligands from large combinatorial libraries. Chem Biol (2010) 1.67
Physical and functional association of RNA polymerase II and the proteasome. Proc Natl Acad Sci U S A (2004) 1.61
Chemistry of periodate-mediated cross-linking of 3,4-dihydroxylphenylalanine-containing molecules to proteins. J Am Chem Soc (2006) 1.60
A high-throughput assay for assessing the cell permeability of combinatorial libraries. Nat Biotechnol (2005) 1.54
Proteolytic turnover of the Gal4 transcription factor is not required for function in vivo. Nature (2006) 1.49
A biomimetic polyketide-inspired approach to small-molecule ligand discovery. Nat Chem (2011) 1.49
Peptoids as potential therapeutics. Curr Opin Mol Ther (2009) 1.49
Genome-wide analysis of human HSF1 signaling reveals a transcriptional program linked to cellular adaptation and survival. Mol Biosyst (2006) 1.47
Target identification in chemical genetics: the (often) missing link. Chem Biol (2004) 1.47
Quantitative evaluation of the relative cell permeability of peptoids and peptides. J Am Chem Soc (2007) 1.44
A general method for characterization of humoral immunity induced by a vaccine or infection. Vaccine (2010) 1.42
High-level generation of polyclonal antibodies by genetic immunization. Nat Biotechnol (2003) 1.41
Identification of a peptoid inhibitor of the proteasome 19S regulatory particle. J Am Chem Soc (2007) 1.36
Isolation of lung tumor specific peptides from a random peptide library: generation of diagnostic and cell-targeting reagents. Cancer Lett (2003) 1.34
The detection limit of a Gd3+-based T1 agent is substantially reduced when targeted to a protein microdomain. Magn Reson Imaging (2008) 1.33
Protein "fingerprinting" in complex mixtures with peptoid microarrays. Proc Natl Acad Sci U S A (2005) 1.33
Synthesis and screening of stereochemically diverse combinatorial libraries of peptide tertiary amides. Chem Biol (2013) 1.32
The role of the proteasomal ATPases and activator monoubiquitylation in regulating Gal4 binding to promoters. Genes Dev (2006) 1.32
Exploring antibody recognition of sequence space through random-sequence peptide microarrays. Mol Cell Proteomics (2010) 1.31
A nonproteolytic function of the 19S regulatory subunit of the 26S proteasome is required for efficient activated transcription by human RNA polymerase II. Biochemistry (2002) 1.30
A cell-permeable synthetic transcription factor mimic. Angew Chem Int Ed Engl (2007) 1.29
ORF-FINDER: a vector for high-throughput gene identification. Gene (2002) 1.26
Distinct functions of the ubiquitin-proteasome pathway influence nucleotide excision repair. EMBO J (2006) 1.24
Periodate-triggered cross-linking of DOPA-containing peptide-protein complexes. J Am Chem Soc (2004) 1.24
Genomic studies of transcription factor-DNA interactions. Curr Opin Chem Biol (2005) 1.21
Quantum dots as a visual aid for screening bead-bound combinatorial libraries. Chembiochem (2003) 1.20
Design and synthesis of a cell-permeable synthetic transcription factor mimic. J Comb Chem (2007) 1.17
Application of immunosignatures to the assessment of Alzheimer's disease. Ann Neurol (2011) 1.17
Abeta42 gene vaccine prevents Abeta42 deposition in brain of double transgenic mice. J Neurol Sci (2007) 1.17
NADP regulates the yeast GAL induction system. Science (2008) 1.15
Identification of Gal4 activation domain-binding proteins in the 26S proteasome by periodate-triggered cross-linking. Mol Biosyst (2005) 1.15
Steroid receptor coactivator-3 expression in lung cancer and its role in the regulation of cancer cell survival and proliferation. Cancer Res (2010) 1.13
Incorporation of heterocycles into the backbone of peptoids to generate diverse peptoid-inspired one bead one compound libraries. ACS Comb Sci (2012) 1.11
Peptide microarrays for carbohydrate recognition. Analyst (2009) 1.10
Utility of redundant combinatorial libraries in distinguishing high and low quality screening hits. ACS Comb Sci (2014) 1.10
High-throughput evaluation of relative cell permeability between peptoids and peptides. Bioorg Med Chem (2008) 1.09
Physical and functional interactions of monoubiquitylated transactivators with the proteasome. J Biol Chem (2008) 1.08
MRI detection of VEGFR2 in vivo using a low molecular weight peptoid-(Gd)8-dendron for targeting. J Am Chem Soc (2010) 1.08
Magnetic resonance imaging detects a specific peptide-protein binding event. J Am Chem Soc (2002) 1.08
Label transfer chemistry for the characterization of protein-protein interactions. J Am Chem Soc (2007) 1.07
Acyl hydrazides as peptoid sub-monomers. Chem Commun (Camb) (2011) 1.07
Discovery of peptoid ligands for anti-aquaporin 4 antibodies. Chem Biol (2013) 1.07
The proteasomal ATPase complex is required for stress-induced transcription in yeast. Nucleic Acids Res (2006) 1.06
Abeta42 gene vaccination reduces brain amyloid plaque burden in transgenic mice. J Neurol Sci (2006) 1.05
Synthesis of libraries of peptidomimetic compounds containing a 2-oxopiperazine unit in the main chain. Org Biomol Chem (2013) 1.05
In vitro selection of a peptide with high selectivity for cardiomyocytes in vivo. J Mol Biol (2004) 1.04
Transformation of low-affinity lead compounds into high-affinity protein capture agents. Chem Biol (2004) 1.04
Potent and selective photo-inactivation of proteins with peptoid-ruthenium conjugates. Nat Chem Biol (2010) 1.03
The pharmacophore of a peptoid VEGF receptor 2 antagonist includes both side chain and main chain residues. Bioorg Med Chem Lett (2008) 1.03
Isolation and characterization of coactivator-binding peptoids from a combinatorial library. Mol Biosyst (2006) 1.02
A general system for evaluating the efficiency of chromophore-assisted light inactivation (CALI) of proteins reveals Ru(II) tris-bipyridyl as an unusually efficient "warhead". Mol Biosyst (2007) 1.02
Immunosignaturing can detect products from molecular markers in brain cancer. PLoS One (2012) 1.01
Selective toxin sequestrants for the treatment of bacterial infections. J Am Chem Soc (2009) 1.01
Physical characterization of the "immunosignaturing effect". Mol Cell Proteomics (2012) 1.00
Isolation of antagonists of antigen-specific autoimmune T cell proliferation. Chem Biol (2009) 1.00
Quantitative comparison of the relative cell permeability of cyclic and linear peptides. Chem Biol (2007) 1.00
The neurohormone orexin stimulates hypoxia-inducible factor-1 activity. Genes Dev (2007) 1.00
Toward a general chemical method for rapidly mapping multi-protein complexes. J Proteome Res (2004) 0.99
GuiTope: an application for mapping random-sequence peptides to protein sequences. BMC Bioinformatics (2012) 0.99
Rapid identification of the pharmacophore in a peptoid inhibitor of the proteasome regulatory particle. Chem Commun (Camb) (2008) 0.98
Expression profiling of Yersinia pestis during mouse pulmonary infection. DNA Cell Biol (2006) 0.96
A potent transactivation domain mimic with activity in living cells. J Am Chem Soc (2005) 0.96
Photolithographic synthesis of cyclic peptide arrays using a differential deprotection strategy. Chem Commun (Camb) (2005) 0.96
Activation domain-dependent monoubiquitylation of Gal4 protein is essential for promoter binding in vivo. J Biol Chem (2008) 0.96
Discovery of native autoantigens via antigen surrogate technology: application to type 1 diabetes. ACS Chem Biol (2014) 0.95
Peptide-mediated targeting of the islets of Langerhans. Diabetes (2005) 0.94
Expanded polyglutamine-binding peptoid as a novel therapeutic agent for treatment of Huntington's disease. Chem Biol (2011) 0.94
Physical association of the APIS complex and general transcription factors. Biochem Biophys Res Commun (2002) 0.93
Discovery of high-affinity protein binding ligands--backwards. PLoS One (2010) 0.93
Immunosignatures can predict vaccine efficacy. Proc Natl Acad Sci U S A (2013) 0.93
A liquid array platform for the multiplexed analysis of synthetic molecule-protein interactions. ACS Chem Biol (2013) 0.93
Periodate-triggered cross-linking reveals Sug2/Rpt4 as the molecular target of a peptoid inhibitor of the 19S proteasome regulatory particle. J Am Chem Soc (2007) 0.93
Submonomer synthesis of a hybrid peptoid-azapeptoid library. ACS Comb Sci (2012) 0.93
Simple reporter gene-based assays for hairpin poly(amide) conjugate permeability and DNA-binding activity in living cells. Mol Biosyst (2005) 0.93
Evaluation of biological sample preparation for immunosignature-based diagnostics. Clin Vaccine Immunol (2012) 0.93
Feasibility of an early Alzheimer's disease immunosignature diagnostic test. J Neuroimmunol (2012) 0.91
Rapid identification of improved protein ligands using peptoid microarrays. Bioorg Med Chem Lett (2009) 0.90
A library-selected, Langerhans cell-targeting peptide enhances an immune response. DNA Cell Biol (2004) 0.90
Protein affinity labeling mediated by genetically encoded peptide tags. Angew Chem Int Ed Engl (2002) 0.90
Decoding split and pool combinatorial libraries with electron-transfer dissociation tandem mass spectrometry. J Am Soc Mass Spectrom (2013) 0.89
Transcription activation by a PNA-peptide chimera in a mammalian cell extract. Chem Biol (2003) 0.89
Rapid lead discovery through iterative screening of one bead one compound libraries. ACS Comb Sci (2014) 0.89
Dynamics of the hypoxia-inducible factor-1-vascular endothelial growth factor promoter complex. J Biol Chem (2007) 0.88
Thermodynamic additivity of sequence variations: an algorithm for creating high affinity peptides without large libraries or structural information. PLoS One (2010) 0.88