PubRank

Dieter Jahn

Author PubWeight™ 126.25‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 PrediSi: prediction of signal peptides and their cleavage positions. Nucleic Acids Res 2004 3.93
2 Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes. Bioinformatics 2005 2.82
3 PRODORIC: prokaryotic database of gene regulation. Nucleic Acids Res 2003 2.81
4 JCat: a novel tool to adapt codon usage of a target gene to its potential expression host. Nucleic Acids Res 2005 2.60
5 RNA-dependent cysteine biosynthesis in archaea. Science 2005 2.50
6 The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea. ISME J 2009 2.00
7 Crystal structure of coproporphyrinogen III oxidase reveals cofactor geometry of Radical SAM enzymes. EMBO J 2003 1.98
8 Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves. Nature 2005 1.97
9 Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319. J Bacteriol 2011 1.86
10 Bacillus megaterium--from simple soil bacterium to industrial protein production host. Appl Microbiol Biotechnol 2007 1.85
11 Crystal structure of 5-aminolevulinate synthase, the first enzyme of heme biosynthesis, and its link to XLSA in humans. EMBO J 2005 1.74
12 JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information. Nucleic Acids Res 2006 1.69
13 Long-term anaerobic survival of the opportunistic pathogen Pseudomonas aeruginosa via pyruvate fermentation. J Bacteriol 2004 1.63
14 SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas. Nucleic Acids Res 2007 1.55
15 The biochemistry of heme biosynthesis. Arch Biochem Biophys 2008 1.53
16 Structure and function of enzymes in heme biosynthesis. Protein Sci 2010 1.48
17 PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes. Nucleic Acids Res 2008 1.39
18 JVirGel: Calculation of virtual two-dimensional protein gels. Nucleic Acids Res 2003 1.33
19 The Fnr regulon of Bacillus subtilis. J Bacteriol 2006 1.29
20 The anaerobic regulatory network required for Pseudomonas aeruginosa nitrate respiration. J Bacteriol 2007 1.29
21 Anaerobic adaptation in Pseudomonas aeruginosa: definition of the Anr and Dnr regulons. Environ Microbiol 2010 1.24
22 Anaerobic physiology of Pseudomonas aeruginosa in the cystic fibrosis lung. Int J Med Microbiol 2010 1.23
23 Oxygen-independent coproporphyrinogen-III oxidase HemN from Escherichia coli. J Biol Chem 2002 1.22
24 ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks. Nucleic Acids Res 2008 1.18
25 A short story about a big magic bug. Bioeng Bugs 2010 1.16
26 Structure and function of radical SAM enzymes. Curr Opin Chem Biol 2004 1.16
27 Characterization of JG024, a pseudomonas aeruginosa PB1-like broad host range phage under simulated infection conditions. BMC Microbiol 2010 1.15
28 Production and secretion of recombinant Leuconostoc mesenteroides dextransucrase DsrS in Bacillus megaterium. Biotechnol Bioeng 2005 1.14
29 Identification and functional analysis of enzymes required for precorrin-2 dehydrogenation and metal ion insertion in the biosynthesis of sirohaem and cobalamin in Bacillus megaterium. Biochem J 2003 1.13
30 Crystal structure of the nitrogenase-like dark operative protochlorophyllide oxidoreductase catalytic complex (ChlN/ChlB)2. J Biol Chem 2010 1.11
31 Characterization of a new type of phosphopantetheinyl transferase for fatty acid and siderophore synthesis in Pseudomonas aeruginosa. J Biol Chem 2002 1.10
32 MetaQuant: a tool for the automatic quantification of GC/MS-based metabolome data. Bioinformatics 2006 1.10
33 Genetic tools for the investigation of Roseobacter clade bacteria. BMC Microbiol 2009 1.07
34 Bacillus subtilis Fnr senses oxygen via a [4Fe-4S] cluster coordinated by three cysteine residues without change in the oligomeric state. Mol Microbiol 2006 1.06
35 Structural and functional comparison of HemN to other radical SAM enzymes. Biol Chem 2005 1.04
36 Characterization of the cobaltochelatase CbiXL: evidence for a 4Fe-4S center housed within an MXCXXC motif. J Biol Chem 2003 1.03
37 Plasmid system for the intracellular production and purification of affinity-tagged proteins in Bacillus megaterium. Biotechnol Bioeng 2007 1.02
38 Radical S-adenosylmethionine enzyme coproporphyrinogen III oxidase HemN: functional features of the [4Fe-4S] cluster and the two bound S-adenosyl-L-methionines. J Biol Chem 2005 1.02
39 TLM-Tracker: software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies. Bioinformatics 2012 1.00
40 Heme biosynthesis is coupled to electron transport chains for energy generation. Proc Natl Acad Sci U S A 2010 1.00
41 Members of the genus Arthrobacter grow anaerobically using nitrate ammonification and fermentative processes: anaerobic adaptation of aerobic bacteria abundant in soil. FEMS Microbiol Lett 2003 1.00
42 Getting the big beast to work--systems biotechnology of Bacillus megaterium for novel high-value proteins. J Biotechnol 2012 1.00
43 The substrate radical of Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN. J Biol Chem 2006 1.00
44 High yield recombinant penicillin G amidase production and export into the growth medium using Bacillus megaterium. Microb Cell Fact 2006 0.99
45 A Bacillus megaterium plasmid system for the production, export, and one-step purification of affinity-tagged heterologous levansucrase from growth medium. Appl Environ Microbiol 2006 0.99
46 Metabolic engineering of cobalamin (vitamin B12) production in Bacillus megaterium. Microb Biotechnol 2009 0.99
47 Crystal structure of a non-discriminating glutamyl-tRNA synthetase. J Mol Biol 2006 0.99
48 ATP-driven reduction by dark-operative protochlorophyllide oxidoreductase from Chlorobium tepidum mechanistically resembles nitrogenase catalysis. J Biol Chem 2008 0.99
49 Oxygen-dependent coproporphyrinogen III oxidase (HemF) from Escherichia coli is stimulated by manganese. J Biol Chem 2003 0.99
50 The Bacillus subtilis nrdEF genes, encoding a class Ib ribonucleotide reductase, are essential for aerobic and anaerobic growth. Appl Environ Microbiol 2006 0.99
51 Bacillus subtilis ResD induces expression of the potential regulatory genes yclJK upon oxygen limitation. J Bacteriol 2004 0.99
52 Coexpression of the type I signal peptidase gene sipM increases recombinant protein production and export in Bacillus megaterium MS941. Biotechnol Bioeng 2005 0.98
53 High-yield intra- and extracellular protein production using Bacillus megaterium. Appl Environ Microbiol 2010 0.97
54 Genotypic and phenotypic characterization of Pseudomonas aeruginosa isolates from urinary tract infections. Int J Med Microbiol 2010 0.97
55 Regulation of heme biosynthesis in non-phototrophic bacteria. J Mol Microbiol Biotechnol 2002 0.96
56 A T7 RNA polymerase-dependent gene expression system for Bacillus megaterium. Appl Microbiol Biotechnol 2009 0.95
57 A novel pathway for the biosynthesis of heme in Archaea: genome-based bioinformatic predictions and experimental evidence. Archaea 2010 0.95
58 The transcription factor AlsR binds and regulates the promoter of the alsSD operon responsible for acetoin formation in Bacillus subtilis. J Bacteriol 2011 0.94
59 Insights into polymer versus oligosaccharide synthesis: mutagenesis and mechanistic studies of a novel levansucrase from Bacillus megaterium. Biochem J 2007 0.94
60 You are what you talk: quorum sensing induces individual morphologies and cell division modes in Dinoroseobacter shibae. ISME J 2013 0.93
61 Complex formation between glutamyl-tRNA reductase and glutamate-1-semialdehyde 2,1-aminomutase in Escherichia coli during the initial reactions of porphyrin biosynthesis. J Biol Chem 2005 0.93
62 Evolutionary relationship between initial enzymes of tetrapyrrole biosynthesis. J Mol Biol 2006 0.93
63 Mechanism of a GatCAB amidotransferase: aspartyl-tRNA synthetase increases its affinity for Asp-tRNA(Asn) and novel aminoacyl-tRNA analogues are competitive inhibitors. Biochemistry 2007 0.93
64 Structure of porphobilinogen synthase from Pseudomonas aeruginosa in complex with 5-fluorolevulinic acid suggests a double Schiff base mechanism. J Mol Biol 2002 0.93
65 Systems biology of recombinant protein production using Bacillus megaterium. Methods Enzymol 2011 0.92
66 tRNA recognition by glutamyl-tRNA reductase. J Biol Chem 2004 0.90
67 Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38. Genome Announc 2014 0.90
68 Export, purification, and activities of affinity tagged Lactobacillus reuteri levansucrase produced by Bacillus megaterium. Appl Microbiol Biotechnol 2007 0.90
69 Heme biosynthesis in Methanosarcina barkeri via a pathway involving two methylation reactions. J Bacteriol 2006 0.90
70 Codon optimized Thermobifida fusca hydrolase secreted by Bacillus megaterium. Biotechnol Bioeng 2007 0.89
71 Regulation of the anaerobic metabolism in Bacillus subtilis. Adv Microb Physiol 2012 0.89
72 JVirGel 2.0: computational prediction of proteomes separated via two-dimensional gel electrophoresis under consideration of membrane and secreted proteins. Bioinformatics 2006 0.88
73 Structure of ADP-aluminium fluoride-stabilized protochlorophyllide oxidoreductase complex. Proc Natl Acad Sci U S A 2013 0.87
74 Regulatory and metabolic networks for the adaptation of Pseudomonas aeruginosa biofilms to urinary tract-like conditions. PLoS One 2013 0.87
75 Nitrate-responsive NarX-NarL represses arginine-mediated induction of the Pseudomonas aeruginosa arginine fermentation arcDABC operon. Microbiology 2008 0.86
76 Substrate recognition of nitrogenase-like dark operative protochlorophyllide oxidoreductase from Prochlorococcus marinus. J Biol Chem 2008 0.86
77 Escherichia coli glutamyl-tRNA reductase. Trapping the thioester intermediate. J Biol Chem 2002 0.86
78 ROSY--a flexible and universal database and bioinformatics tool platform for Roseobacter related species. In Silico Biol 2008 0.86
79 Chimeric nitrogenase-like enzymes of (bacterio)chlorophyll biosynthesis. J Biol Chem 2009 0.86
80 Aspartate 141 is the fourth ligand of the oxygen-sensing [4Fe-4S]2+ cluster of Bacillus subtilis transcriptional regulator Fnr. J Biol Chem 2010 0.85
81 Lipase LipC affects motility, biofilm formation and rhamnolipid production in Pseudomonas aeruginosa. FEMS Microbiol Lett 2010 0.85
82 Polysaccharide synthesis of the levansucrase SacB from Bacillus megaterium is controlled by distinct surface motifs. J Biol Chem 2011 0.85
83 Structure of the heme biosynthetic Pseudomonas aeruginosa porphobilinogen synthase in complex with the antibiotic alaremycin. Antimicrob Agents Chemother 2009 0.84
84 Transposon mutagenesis identified chromosomal and plasmid genes essential for adaptation of the marine bacterium Dinoroseobacter shibae to anaerobic conditions. J Bacteriol 2013 0.84
85 Aminolaevulinic acid synthase of Rhodobacter capsulatus: high-resolution kinetic investigation of the structural basis for substrate binding and catalysis. Biochem J 2013 0.84
86 Gene regulatory and metabolic adaptation processes of Dinoroseobacter shibae DFL12T during oxygen depletion. J Biol Chem 2014 0.84
87 Production of medium chain length polyhydroxyalkanoate in metabolic flux optimized Pseudomonas putida. Microb Cell Fact 2014 0.83
88 Co-ordination of iron acquisition, iron porphyrin chelation and iron-protoporphyrin export via the cytochrome c biogenesis protein CcmC in Pseudomonas fluorescens. Microbiology 2003 0.83
89 High yield production of extracellular recombinant levansucrase by Bacillus megaterium. Appl Microbiol Biotechnol 2012 0.82
90 Identification and characterization of the Arabidopsis gene encoding the tetrapyrrole biosynthesis enzyme uroporphyrinogen III synthase. Biochem J 2008 0.82
91 Production of recombinant antibody fragments in Bacillus megaterium. Microb Cell Fact 2007 0.82
92 Effect of different carbon sources on central metabolic fluxes and the recombinant production of a hydrolase from Thermobifida fusca in Bacillus megaterium. J Biotechnol 2007 0.82
93 Complex formation between protoporphyrinogen IX oxidase and ferrochelatase during haem biosynthesis in Thermosynechococcus elongatus. Microbiology 2008 0.82
94 Biosynthesis of (bacterio)chlorophylls: ATP-dependent transient subunit interaction and electron transfer of dark operative protochlorophyllide oxidoreductase. J Biol Chem 2010 0.82
95 A sucrose-inducible promoter system for the intra- and extracellular protein production in Bacillus megaterium. J Biotechnol 2007 0.81
96 Functional definition of the tobacco protoporphyrinogen IX oxidase substrate-binding site. Biochem J 2007 0.81
97 Construction and characterization of nitrate and nitrite respiring Pseudomonas putida KT2440 strains for anoxic biotechnical applications. J Biotechnol 2012 0.81
98 A protein database constructed from low-coverage genomic sequence of Bacillus megaterium and its use for accelerated proteomic analysis. J Biotechnol 2006 0.81
99 Cellular levels of heme affect the activity of dimeric glutamyl-tRNA reductase. Biochem Biophys Res Commun 2011 0.80
100 Structure and function of glutamyl-tRNA reductase, the first enzyme of tetrapyrrole biosynthesis in plants and prokaryotes. Photosynth Res 2002 0.79
101 D-mannitol production by resting state whole cell biotrans-formation of D-fructose by heterologous mannitol and formate dehydrogenase gene expression in Bacillus megaterium. Biotechnol J 2007 0.79
102 A tale of two acids: when arginine is a more appropriate acid than H3O+. J Phys Chem B 2010 0.78
103 Systems biology of recombinant protein production in Bacillus megaterium. Adv Biochem Eng Biotechnol 2010 0.78
104 Structures of the nucleotide-binding domain of the human ABCB6 transporter and its complexes with nucleotides. Acta Crystallogr D Biol Crystallogr 2010 0.78
105 Proteome analysis of a recombinant Bacillus megaterium strain during heterologous production of a glucosyltransferase. Proteome Sci 2005 0.78
106 Tracking the evolution of porphobilinogen synthase metal dependence in vitro. J Mol Biol 2004 0.78
107 Lactococcus lactis HemW (HemN) is a haem-binding protein with a putative role in haem trafficking. Biochem J 2012 0.78
108 GeneReporter--sequence-based document retrieval and annotation. Bioinformatics 2011 0.78
109 Transcriptome profiling of degU expression reveals unexpected regulatory patterns in Bacillus megaterium and discloses new targets for optimizing expression. Appl Microbiol Biotechnol 2011 0.78
110 Glutamate recognition and hydride transfer by Escherichia coli glutamyl-tRNA reductase. FEBS J 2007 0.78
111 Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection. Genome Announc 2014 0.77
112 Protochlorophyllide: a new photosensitizer for the photodynamic inactivation of Gram-positive and Gram-negative bacteria. FEMS Microbiol Lett 2008 0.77
113 Strepto-DB, a database for comparative genomics of group A (GAS) and B (GBS) streptococci, implemented with the novel database platform 'Open Genome Resource' (OGeR). Nucleic Acids Res 2008 0.77
114 Microbial communities related to volatile organic compound emission in automobile air conditioning units. Appl Microbiol Biotechnol 2012 0.76
115 Membrane proteomics of Pseudomonas aeruginosa. Methods Mol Biol 2014 0.76
116 Purification, crystallization and preliminary X-ray analysis of the effector domain of AlsR, an LysR-type transcriptional regulator from Bacillus subtilis. Acta Crystallogr Sect F Struct Biol Cryst Commun 2013 0.75
117 An emergent self-organizing map based analysis pipeline for comparative metabolome studies. In Silico Biol 2009 0.75
118 From gene to product. J Biotechnol 2013 0.75
119 Application of Escherichia coli phage K1E DNA-dependent RNA polymerase for in vitro RNA synthesis and in vivo protein production in Bacillus megaterium. Appl Microbiol Biotechnol 2010 0.75
120 InFiRe -- a novel computational method for the identification of insertion sites in transposon mutagenized bacterial genomes. Bioinformatics 2011 0.75