Published in Bioinformatics on October 17, 2006
The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets. BMC Bioinformatics (2010) 1.68
Extending the breadth of metabolite profiling by gas chromatography coupled to mass spectrometry. Trends Analyt Chem (2008) 1.31
Adaptive sugar provisioning controls survival of C. elegans embryos in adverse environments. Curr Biol (2009) 1.21
GC/MS based metabolomics: development of a data mining system for metabolite identification by using soft independent modeling of class analogy (SIMCA). BMC Bioinformatics (2011) 1.15
PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools. BMC Bioinformatics (2012) 1.08
Functional specialization in proline biosynthesis of melanoma. PLoS One (2012) 1.06
Methodological approaches to help unravel the intracellular metabolome of Bacillus subtilis. Microb Cell Fact (2013) 0.85
Glutamate and asparagine cataplerosis underlie glutamine addiction in melanoma. Oncotarget (2015) 0.81
Arginylation regulates purine nucleotide biosynthesis by enhancing the activity of phosphoribosyl pyrophosphate synthase. Nat Commun (2015) 0.80
EasyLCMS: an asynchronous web application for the automated quantification of LC-MS data. BMC Res Notes (2012) 0.78
Proteomic and metabolic traits of grape exocarp to explain different anthocyanin concentrations of the cultivars. Front Plant Sci (2015) 0.76
mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics. BMC Bioinformatics (2009) 0.75
From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web-resources for mass spectral plant metabolomics. Gigascience (2017) 0.75
Reductive glutamine metabolism by IDH1 mediates lipogenesis under hypoxia. Nature (2011) 7.94
PrediSi: prediction of signal peptides and their cleavage positions. Nucleic Acids Res (2004) 3.93
Oncogenic K-Ras decouples glucose and glutamine metabolism to support cancer cell growth. Mol Syst Biol (2011) 3.15
Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes. Bioinformatics (2005) 2.82
PRODORIC: prokaryotic database of gene regulation. Nucleic Acids Res (2003) 2.81
JCat: a novel tool to adapt codon usage of a target gene to its potential expression host. Nucleic Acids Res (2005) 2.60
RNA-dependent cysteine biosynthesis in archaea. Science (2005) 2.50
The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea. ISME J (2009) 2.00
Crystal structure of coproporphyrinogen III oxidase reveals cofactor geometry of Radical SAM enzymes. EMBO J (2003) 1.98
Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves. Nature (2005) 1.97
VBASE2, an integrative V gene database. Nucleic Acids Res (2005) 1.86
Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319. J Bacteriol (2011) 1.86
Bacillus megaterium--from simple soil bacterium to industrial protein production host. Appl Microbiol Biotechnol (2007) 1.85
Crystal structure of 5-aminolevulinate synthase, the first enzyme of heme biosynthesis, and its link to XLSA in humans. EMBO J (2005) 1.74
JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information. Nucleic Acids Res (2006) 1.69
Long-term anaerobic survival of the opportunistic pathogen Pseudomonas aeruginosa via pyruvate fermentation. J Bacteriol (2004) 1.63
Immune-responsive gene 1 protein links metabolism to immunity by catalyzing itaconic acid production. Proc Natl Acad Sci U S A (2013) 1.62
RhlR expression in Pseudomonas aeruginosa is modulated by the Pseudomonas quinolone signal via PhoB-dependent and -independent pathways. J Bacteriol (2006) 1.59
SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas. Nucleic Acids Res (2007) 1.55
The biochemistry of heme biosynthesis. Arch Biochem Biophys (2008) 1.53
Structure and function of enzymes in heme biosynthesis. Protein Sci (2010) 1.48
PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes. Nucleic Acids Res (2008) 1.39
Anaerobic survival of Pseudomonas aeruginosa by pyruvate fermentation requires an Usp-type stress protein. J Bacteriol (2006) 1.34
JVirGel: Calculation of virtual two-dimensional protein gels. Nucleic Acids Res (2003) 1.33
The Fnr regulon of Bacillus subtilis. J Bacteriol (2006) 1.29
The anaerobic regulatory network required for Pseudomonas aeruginosa nitrate respiration. J Bacteriol (2007) 1.29
Anaerobic adaptation in Pseudomonas aeruginosa: definition of the Anr and Dnr regulons. Environ Microbiol (2010) 1.24
Anaerobic physiology of Pseudomonas aeruginosa in the cystic fibrosis lung. Int J Med Microbiol (2010) 1.23
Oxygen-independent coproporphyrinogen-III oxidase HemN from Escherichia coli. J Biol Chem (2002) 1.22
Pathways for phosphatidylcholine biosynthesis in bacteria. Microbiology (2003) 1.20
ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks. Nucleic Acids Res (2008) 1.18
A short story about a big magic bug. Bioeng Bugs (2010) 1.16
Structure and function of radical SAM enzymes. Curr Opin Chem Biol (2004) 1.16
Characterization of JG024, a pseudomonas aeruginosa PB1-like broad host range phage under simulated infection conditions. BMC Microbiol (2010) 1.15
Production and secretion of recombinant Leuconostoc mesenteroides dextransucrase DsrS in Bacillus megaterium. Biotechnol Bioeng (2005) 1.14
Identification and functional analysis of enzymes required for precorrin-2 dehydrogenation and metal ion insertion in the biosynthesis of sirohaem and cobalamin in Bacillus megaterium. Biochem J (2003) 1.13
A multifaceted study of Pseudomonas aeruginosa shutdown by virulent podovirus LUZ19. MBio (2013) 1.11
Crystal structure of the nitrogenase-like dark operative protochlorophyllide oxidoreductase catalytic complex (ChlN/ChlB)2. J Biol Chem (2010) 1.11
Characterization of a new type of phosphopantetheinyl transferase for fatty acid and siderophore synthesis in Pseudomonas aeruginosa. J Biol Chem (2002) 1.10
A biomolecular isolation framework for eco-systems biology. ISME J (2012) 1.10
An improved Escherichia coli donor strain for diparental mating. FEMS Microbiol Lett (2009) 1.10
Genetic tools for the investigation of Roseobacter clade bacteria. BMC Microbiol (2009) 1.07
Bacillus subtilis Fnr senses oxygen via a [4Fe-4S] cluster coordinated by three cysteine residues without change in the oligomeric state. Mol Microbiol (2006) 1.06
Complexity of dopamine metabolism. Cell Commun Signal (2013) 1.06
Sequencing and characterization of Pseudomonas aeruginosa phage JG004. BMC Microbiol (2011) 1.04
Structural and functional comparison of HemN to other radical SAM enzymes. Biol Chem (2005) 1.04
Characterization of the cobaltochelatase CbiXL: evidence for a 4Fe-4S center housed within an MXCXXC motif. J Biol Chem (2003) 1.03
Plasmid system for the intracellular production and purification of affinity-tagged proteins in Bacillus megaterium. Biotechnol Bioeng (2007) 1.02
Radical S-adenosylmethionine enzyme coproporphyrinogen III oxidase HemN: functional features of the [4Fe-4S] cluster and the two bound S-adenosyl-L-methionines. J Biol Chem (2005) 1.02
TLM-Tracker: software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies. Bioinformatics (2012) 1.00
Heme biosynthesis is coupled to electron transport chains for energy generation. Proc Natl Acad Sci U S A (2010) 1.00
Members of the genus Arthrobacter grow anaerobically using nitrate ammonification and fermentative processes: anaerobic adaptation of aerobic bacteria abundant in soil. FEMS Microbiol Lett (2003) 1.00
Getting the big beast to work--systems biotechnology of Bacillus megaterium for novel high-value proteins. J Biotechnol (2012) 1.00
The Pseudomonas aeruginosa universal stress protein PA4352 is essential for surviving anaerobic energy stress. J Bacteriol (2006) 1.00
The substrate radical of Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN. J Biol Chem (2006) 1.00
High yield recombinant penicillin G amidase production and export into the growth medium using Bacillus megaterium. Microb Cell Fact (2006) 0.99
The Bacillus subtilis nrdEF genes, encoding a class Ib ribonucleotide reductase, are essential for aerobic and anaerobic growth. Appl Environ Microbiol (2006) 0.99
Oxygen-dependent coproporphyrinogen III oxidase (HemF) from Escherichia coli is stimulated by manganese. J Biol Chem (2003) 0.99
A Bacillus megaterium plasmid system for the production, export, and one-step purification of affinity-tagged heterologous levansucrase from growth medium. Appl Environ Microbiol (2006) 0.99
Metabolic engineering of cobalamin (vitamin B12) production in Bacillus megaterium. Microb Biotechnol (2009) 0.99
Crp induces switching of the CsrB and CsrC RNAs in Yersinia pseudotuberculosis and links nutritional status to virulence. Front Cell Infect Microbiol (2012) 0.99
Crystal structure of a non-discriminating glutamyl-tRNA synthetase. J Mol Biol (2006) 0.99
ATP-driven reduction by dark-operative protochlorophyllide oxidoreductase from Chlorobium tepidum mechanistically resembles nitrogenase catalysis. J Biol Chem (2008) 0.99
Bacillus subtilis ResD induces expression of the potential regulatory genes yclJK upon oxygen limitation. J Bacteriol (2004) 0.99
Susceptibility of Pseudomonas aeruginosa urinary tract isolates and influence of urinary tract conditions on antibiotic tolerance. Curr Microbiol (2011) 0.98
Coexpression of the type I signal peptidase gene sipM increases recombinant protein production and export in Bacillus megaterium MS941. Biotechnol Bioeng (2005) 0.98
Isotope cluster-based compound matching in gas chromatography/mass spectrometry for non-targeted metabolomics. Anal Chem (2013) 0.97
High-yield intra- and extracellular protein production using Bacillus megaterium. Appl Environ Microbiol (2010) 0.97
Genotypic and phenotypic characterization of Pseudomonas aeruginosa isolates from urinary tract infections. Int J Med Microbiol (2010) 0.97
Regulation of heme biosynthesis in non-phototrophic bacteria. J Mol Microbiol Biotechnol (2002) 0.96