Published in BMC Bioinformatics on May 30, 2012
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Chromatographic alignment by warping and dynamic programming as a pre-processing tool for PARAFAC modelling of liquid chromatography-mass spectrometry data. J Chromatogr A (2002) 1.48
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Extending the breadth of metabolite profiling by gas chromatography coupled to mass spectrometry. Trends Analyt Chem (2008) 1.31
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A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments. BMC Bioinformatics (2007) 1.29
Feature detection and alignment of hyphenated chromatographic-mass spectrometric data. Extraction of pure ion chromatograms using Kalman tracking. J Chromatogr A (2008) 1.27
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Metab: an R package for high-throughput analysis of metabolomics data generated by GC-MS. Bioinformatics (2011) 1.11
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A software complement to AMDIS for processing GC-MS metabolomic data. Anal Biochem (2011) 1.08
Gas chromatography/mass spectrometry in metabolic profiling of biological fluids. J Chromatogr B Analyt Technol Biomed Life Sci (2008) 1.07
Metabolomic data processing, analysis, and interpretation using MetaboAnalyst. Curr Protoc Bioinformatics (2011) 1.02
Metabolomics study on the anti-depression effect of xiaoyaosan on rat model of chronic unpredictable mild stress. J Ethnopharmacol (2010) 1.01
Metabolite profiling of germinating rice seeds. J Agric Food Chem (2008) 1.00
Standardizing GC-MS metabolomics. J Chromatogr B Analyt Technol Biomed Life Sci (2008) 0.99
Acid stress-mediated metabolic shift in Lactobacillus sanfranciscensis LSCE1. Appl Environ Microbiol (2011) 0.98
ChromA: signal-based retention time alignment for chromatography-mass spectrometry data. Bioinformatics (2009) 0.93
Spectral deconvolution for overlapping GC/MS components. J Am Soc Mass Spectrom (1992) 0.92
An iterative block-shifting approach to retention time alignment that preserves the shape and area of gas chromatography-mass spectrometry peaks. BMC Bioinformatics (2008) 0.91
Untargeted metabolic profiling reveals potential biomarkers in myocardial infarction and its application. Mol Biosyst (2010) 0.90
Plant phenotype demarcation using nontargeted LC-MS and GC-MS metabolite profiling. J Agric Food Chem (2009) 0.89
A general-purpose baseline estimation algorithm for spectroscopic data. Anal Chim Acta (2010) 0.87
Evaluation of automated sample preparation, retention time locked gas chromatography-mass spectrometry and data analysis methods for the metabolomic study of Arabidopsis species. J Chromatogr A (2011) 0.84
OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data. BMC Bioinformatics (2010) 0.84
Determination of airborne polycyclic aromatic hydrocarbons at an airport by gas chromatography-mass spectrometry and evaluation of occupational exposure. J Chromatogr A (2006) 0.81
Metabolite differentiation and discovery lab (MeDDL): a new tool for biomarker discovery and mass spectral visualization. Anal Chem (2010) 0.80
Extraction of pure components from overlapped signals in gas chromatography-mass spectrometry (GC-MS). BioData Min (2009) 0.79
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Metabolite identification by mass spectrometry: forty years of evolution. Xenobiotica (2011) 0.76
Establishment and application of a metabolomics workflow for identification and profiling of volatiles from leaves of Vitis vinifera by HS-SPME-GC-MS. Phytochem Anal (2011) 0.76
Study of automated mass spectral deconvolution and identification system (AMDIS) in pesticide residue analysis. Rapid Commun Mass Spectrom (2006) 0.76
Systematic identification of abundant A-to-I editing sites in the human transcriptome. Nat Biotechnol (2004) 7.61
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nat Biotechnol (2006) 4.47
MR1 presents microbial vitamin B metabolites to MAIT cells. Nature (2012) 3.71
Cellulose synthase-like CslF genes mediate the synthesis of cell wall (1,3;1,4)-beta-D-glucans. Science (2006) 3.11
Environmental toxins and breast cancer on Long Island. I. Polycyclic aromatic hydrocarbon DNA adducts. Cancer Epidemiol Biomarkers Prev (2002) 2.83
O-glycosylated cell wall proteins are essential in root hair growth. Science (2011) 2.34
Arabinogalactan-proteins: key regulators at the cell surface? Plant Physiol (2010) 2.15
VEGF-D promotes tumor metastasis by regulating prostaglandins produced by the collecting lymphatic endothelium. Cancer Cell (2012) 2.14
Humans lack iGb3 due to the absence of functional iGb3-synthase: implications for NKT cell development and transplantation. PLoS Biol (2008) 2.08
A barley cellulose synthase-like CSLH gene mediates (1,3;1,4)-beta-D-glucan synthesis in transgenic Arabidopsis. Proc Natl Acad Sci U S A (2009) 1.97
Distinct protein classes including novel merozoite surface antigens in Raft-like membranes of Plasmodium falciparum. J Biol Chem (2005) 1.95
SMP-1, a member of a new family of small myristoylated proteins in kinetoplastid parasites, is targeted to the flagellum membrane in Leishmania. Mol Biol Cell (2004) 1.95
High-throughput mapping of cell-wall polymers within and between plants using novel microarrays. Plant J (2007) 1.85
MyD88 is essential for clearance of Leishmania major: possible role for lipophosphoglycan and Toll-like receptor 2 signaling. Eur J Immunol (2003) 1.82
Genome-wide DNA methylation profiles in hepatocellular carcinoma. Hepatology (2012) 1.81
Using genomic resources to guide research directions. The arabinogalactan protein gene family as a test case. Plant Physiol (2002) 1.80
The fasciclin-like arabinogalactan proteins of Arabidopsis. A multigene family of putative cell adhesion molecules. Plant Physiol (2003) 1.74
Telomere length, oxidative damage, antioxidants and breast cancer risk. Int J Cancer (2009) 1.70
Loss of nucleosomal DNA condensation coincides with appearance of a novel nuclear protein in dinoflagellates. Curr Biol (2012) 1.63
The genetics and transcriptional profiles of the cellulose synthase-like HvCslF gene family in barley. Plant Physiol (2008) 1.58
Plant metabolomics reveals conserved and divergent metabolic responses to salinity. Physiol Plant (2008) 1.56
Changes in cell wall polysaccharides in developing barley (Hordeum vulgare) coleoptiles. Planta (2005) 1.54
The charophycean green algae provide insights into the early origins of plant cell walls. Plant J (2011) 1.49
Mitochondrial metabolism of sexual and asexual blood stages of the malaria parasite Plasmodium falciparum. BMC Biol (2013) 1.46
Arabinogalactan proteins are required for apical cell extension in the moss Physcomitrella patens. Plant Cell (2005) 1.43
SSRPrimer and SSR Taxonomy Tree: Biome SSR discovery. Nucleic Acids Res (2006) 1.43
SNPServer: a real-time SNP discovery tool. Nucleic Acids Res (2005) 1.42
Mixed-linkage (1-->3),(1-->4)-beta-D-glucan is not unique to the Poales and is an abundant component of Equisetum arvense cell walls. Plant J (2008) 1.41
Protein secretion and outer membrane assembly in Alphaproteobacteria. FEMS Microbiol Rev (2008) 1.37
The Leishmania-macrophage interaction: a metabolic perspective. Cell Microbiol (2007) 1.37
PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of phosphatidylinositol mannoside in mycobacteria. J Biol Chem (2006) 1.36
Plant cell wall biosynthesis: genetic, biochemical and functional genomics approaches to the identification of key genes. Plant Biotechnol J (2006) 1.35
Virulence of Leishmania major in macrophages and mice requires the gluconeogenic enzyme fructose-1,6-bisphosphatase. Proc Natl Acad Sci U S A (2006) 1.34
Evidence that intracellular beta1-2 mannan is a virulence factor in Leishmania parasites. J Biol Chem (2003) 1.34
Secondary acylation of Klebsiella pneumoniae lipopolysaccharide contributes to sensitivity to antibacterial peptides. J Biol Chem (2007) 1.33
LeishCyc: a biochemical pathways database for Leishmania major. BMC Syst Biol (2009) 1.32
Convergent evolution of receptors for protein import into mitochondria. Curr Biol (2006) 1.32
Temporal and spatial appearance of wall polysaccharides during cellularization of barley (Hordeum vulgare) endosperm. Planta (2006) 1.31
Surface determinants of Leishmania parasites and their role in infectivity in the mammalian host. Curr Mol Med (2004) 1.31
Over-expression of specific HvCslF cellulose synthase-like genes in transgenic barley increases the levels of cell wall (1,3;1,4)-β-d-glucans and alters their fine structure. Plant Biotechnol J (2011) 1.30
Drought responses of leaf tissues from wheat cultivars of differing drought tolerance at the metabolite level. Mol Plant (2011) 1.29
A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments. BMC Bioinformatics (2007) 1.29
Metabolic responses to salt stress of barley (Hordeum vulgare L.) cultivars, Sahara and Clipper, which differ in salinity tolerance. J Exp Bot (2009) 1.29
SOCS-6 binds to insulin receptor substrate 4, and mice lacking the SOCS-6 gene exhibit mild growth retardation. Mol Cell Biol (2002) 1.28
Arabinogalactan-proteins and the research challenges for these enigmatic plant cell surface proteoglycans. Front Plant Sci (2012) 1.26
Determining the polysaccharide composition of plant cell walls. Nat Protoc (2012) 1.25
Conserved motifs reveal details of ancestry and structure in the small TIM chaperones of the mitochondrial intermembrane space. Mol Biol Evol (2007) 1.25
Molecular characterization of two Arabidopsis thaliana glycosyltransferase mutants, rra1 and rra2, which have a reduced residual arabinose content in a polymer tightly associated with the cellulosic wall residue. Plant Mol Biol (2007) 1.24
Multiple genetic variants in telomere pathway genes and breast cancer risk. Cancer Epidemiol Biomarkers Prev (2010) 1.23
Mitochondrial metabolism of glucose and glutamine is required for intracellular growth of Toxoplasma gondii. Cell Host Microbe (2012) 1.22
Prognostic significance of gene-specific promoter hypermethylation in breast cancer patients. Breast Cancer Res Treat (2011) 1.22
Biosynthesis of mycobacterial phosphatidylinositol mannosides. Biochem J (2004) 1.22
Aflatoxin B1 exposure, hepatitis B virus infection, and hepatocellular carcinoma in Taiwan. Cancer Epidemiol Biomarkers Prev (2009) 1.21
Polycyclic aromatic hydrocarbon-DNA adducts and breast cancer: a pooled analysis. Arch Environ Health (2004) 1.21
V gamma 9 V delta 2 T cell cytotoxicity against tumor cells is enhanced by monoclonal antibody drugs--rituximab and trastuzumab. Int J Cancer (2008) 1.21
Characterization of the Arabidopsis lysine-rich arabinogalactan-protein AtAGP17 mutant (rat1) that results in a decreased efficiency of agrobacterium transformation. Plant Physiol (2004) 1.21
Antidepressant-induced jitteriness/anxiety syndrome: systematic review. Br J Psychiatry (2009) 1.20
The C-terminal TPR domain of Tom70 defines a family of mitochondrial protein import receptors found only in animals and fungi. J Mol Biol (2006) 1.20
The reductase that catalyzes mycolic motif synthesis is required for efficient attachment of mycolic acids to arabinogalactan. J Biol Chem (2007) 1.19
Polymorphism in the DNA repair gene XPD, polycyclic aromatic hydrocarbon-DNA adducts, cigarette smoking, and breast cancer risk. Cancer Epidemiol Biomarkers Prev (2004) 1.17
Modification of glycopeptidolipids by an O-methyltransferase of Mycobacterium smegmatis. Microbiology (2002) 1.15
Association between arsenic exposure from drinking water and plasma levels of soluble cell adhesion molecules. Environ Health Perspect (2007) 1.15
Aflatoxin B1 and polycyclic aromatic hydrocarbon adducts, p53 mutations and p16 methylation in liver tissue and plasma of hepatocellular carcinoma patients. Int J Cancer (2006) 1.12
Compartmentalization of lipid biosynthesis in mycobacteria. J Biol Chem (2005) 1.11
The transcriptional regulator LEUNIG_HOMOLOG regulates mucilage release from the Arabidopsis testa. Plant Physiol (2011) 1.11
Function of phosphatidylinositol in mycobacteria. J Biol Chem (2005) 1.10
Molecular mimicry in Campylobacter jejuni: role of the lipo-oligosaccharide core oligosaccharide in inducing anti-ganglioside antibodies. FEMS Immunol Med Microbiol (2007) 1.10
GWIS--model-free, fast and exhaustive search for epistatic interactions in case-control GWAS. BMC Genomics (2013) 1.09
Identification of a novel protein with a role in lipoarabinomannan biosynthesis in mycobacteria. J Biol Chem (2006) 1.09
Isotopomer profiling of Leishmania mexicana promastigotes reveals important roles for succinate fermentation and aspartate uptake in tricarboxylic acid cycle (TCA) anaplerosis, glutamate synthesis, and growth. J Biol Chem (2011) 1.09
Apicoplast and endoplasmic reticulum cooperate in fatty acid biosynthesis in apicomplexan parasite Toxoplasma gondii. J Biol Chem (2011) 1.09
Post-translational modifications of arabinogalactan-peptides of Arabidopsis thaliana. Endoplasmic reticulum and glycosylphosphatidylinositol-anchor signal cleavage sites and hydroxylation of proline. J Biol Chem (2004) 1.08
The transmembrane segment of Tom20 is recognized by Mim1 for docking to the mitochondrial TOM complex. J Mol Biol (2007) 1.08
Normalizing and integrating metabolomics data. Anal Chem (2012) 1.08
Identification of a novel group of putative Arabidopsis thaliana beta-(1,3)-galactosyltransferases. Plant Mol Biol (2008) 1.06
Direct production of proteins with N-terminal cysteine for site-specific conjugation. Bioconjug Chem (2004) 1.06
Human inflammatory and resolving lipid mediator responses to resistance exercise and ibuprofen treatment. Am J Physiol Regul Integr Comp Physiol (2013) 1.05
Polymorphisms in XRCC1 modify the association between polycyclic aromatic hydrocarbon-DNA adducts, cigarette smoking, dietary antioxidants, and breast cancer risk. Cancer Epidemiol Biomarkers Prev (2005) 1.05
The essentials of protein import in the degenerate mitochondrion of Entamoeba histolytica. PLoS Pathog (2010) 1.05
Proteomic and biochemical evidence links the callose synthase in Nicotiana alata pollen tubes to the product of the NaGSL1 gene. Plant J (2007) 1.05
Quantitative proteomic analysis of wheat cultivars with differing drought stress tolerance. Front Plant Sci (2011) 1.05
A distinct DNA methylation signature defines pediatric pre-B cell acute lymphoblastic leukemia. Epigenetics (2012) 1.04
Analysis of a new mannosyltransferase required for the synthesis of phosphatidylinositol mannosides and lipoarbinomannan reveals two lipomannan pools in corynebacterineae. J Biol Chem (2008) 1.04
Global DNA methylation levels in white blood cells as a biomarker for hepatocellular carcinoma risk: a nested case-control study. Carcinogenesis (2012) 1.04
ADH3 genotype, alcohol intake and breast cancer risk. Carcinogenesis (2005) 1.04
Systems biology: the next frontier for bioinformatics. Adv Bioinformatics (2011) 1.04
Intracellular trafficking of glycosylphosphatidylinositol (GPI)-anchored proteins and free GPIs in Leishmania mexicana. Biochem J (2002) 1.04
Comprehensive profiling and quantitation of amine group containing metabolites. Anal Chem (2011) 1.03