Published in BMC Bioinformatics on November 03, 2006
Combining machine learning and homology-based approaches to accurately predict subcellular localization in Arabidopsis. Plant Physiol (2010) 1.02
Rice Improvement Through Genome-Based Functional Analysis and Molecular Breeding in India. Rice (N Y) (2016) 0.92
PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. BMC Bioinformatics (2013) 0.88
Identification and characterization of plastid-type proteins from sequence-attributed features using machine learning. BMC Bioinformatics (2013) 0.82
LacSubPred: predicting subtypes of Laccases, an important lignin metabolism-related enzyme class, using in silico approaches. BMC Bioinformatics (2014) 0.82
Marker-assisted breeding of the rice restorer line Wanhui 6725 for disease resistance, submergence tolerance and aromatic fragrance. Rice (N Y) (2016) 0.80
Molecular Breeding Strategy and Challenges Towards Improvement of Blast Disease Resistance in Rice Crop. Front Plant Sci (2015) 0.79
Support vector machine-based open crop model (SBOCM): Case of rice production in China. Saudi J Biol Sci (2017) 0.75
Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc Natl Acad Sci U S A (2000) 19.39
Support vector machine approach for protein subcellular localization prediction. Bioinformatics (2001) 4.88
A general regression neural network. IEEE Trans Neural Netw (1991) 4.52
Improved prediction of protein-protein binding sites using a support vector machines approach. Bioinformatics (2004) 2.93
Using functional domain composition and support vector machines for prediction of protein subcellular location. J Biol Chem (2002) 2.18
Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search. J Biol Chem (2005) 1.85
PSLpred: prediction of subcellular localization of bacterial proteins. Bioinformatics (2005) 1.82
SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence. Bioinformatics (2004) 1.57
Prediction of CTL epitopes using QM, SVM and ANN techniques. Vaccine (2004) 1.43
Moisture prediction from simple micrometeorological data. Phytopathology (1999) 1.29
Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein. BMC Bioinformatics (2005) 1.16
Prediction of protein relative solvent accessibility with a two-stage SVM approach. Proteins (2005) 1.08
Discrimination of outer membrane proteins using support vector machines. Bioinformatics (2005) 1.07
Multidimensional support vector machines for visualization of gene expression data. Bioinformatics (2004) 0.93
Two-stage multi-class support vector machines to protein secondary structure prediction. Pac Symp Biocomput (2005) 0.92
Squeezing the turnip with artificial neural nets. Phytopathology (2004) 0.85
Neural network classification of tan spot and stagonospora blotch infection periods in a wheat field environment. Phytopathology (2000) 0.83
Regression and artificial neural network modeling for the prediction of gray leaf spot of maize. Phytopathology (2005) 0.82
Neural networks that distinguish infection periods of wheat tan spot in an outdoor environment. Phytopathology (1997) 0.79
Bcipep: a database of B-cell epitopes. BMC Genomics (2005) 2.27
Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search. J Biol Chem (2005) 1.85
Identification of DNA-binding proteins using support vector machines and evolutionary profiles. BMC Bioinformatics (2007) 1.59
Prediction of mitochondrial proteins using support vector machine and hidden Markov model. J Biol Chem (2005) 1.42
MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes. BMC Res Notes (2009) 1.41
Classification of nuclear receptors based on amino acid composition and dipeptide composition. J Biol Chem (2004) 1.36
Improved method for linear B-cell epitope prediction using antigen's primary sequence. PLoS One (2013) 1.34
In silico platform for prediction of N-, O- and C-glycosites in eukaryotic protein sequences. PLoS One (2013) 1.29
In silico approaches for designing highly effective cell penetrating peptides. J Transl Med (2013) 1.17
AntiBP2: improved version of antibacterial peptide prediction. BMC Bioinformatics (2010) 1.15
Identification of ATP binding residues of a protein from its primary sequence. BMC Bioinformatics (2009) 1.15
SVM based prediction of RNA-binding proteins using binding residues and evolutionary information. J Mol Recognit (2011) 1.13
NPACT: Naturally Occurring Plant-based Anti-cancer Compound-Activity-Target database. Nucleic Acids Res (2012) 1.11
Branching of the p-nitrophenol (PNP) degradation pathway in burkholderia sp. Strain SJ98: Evidences from genetic characterization of PNP gene cluster. AMB Express (2012) 1.10
TumorHoPe: a database of tumor homing peptides. PLoS One (2012) 1.07
ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins. BMC Bioinformatics (2008) 1.07
Identification of NAD interacting residues in proteins. BMC Bioinformatics (2010) 1.07
Prediction methods for B-cell epitopes. Methods Mol Biol (2007) 1.05
In silico approach for predicting toxicity of peptides and proteins. PLoS One (2013) 1.02
Prediction of polyadenylation signals in human DNA sequences using nucleotide frequencies. In Silico Biol (2009) 1.00
Prediction of guide strand of microRNAs from its sequence and secondary structure. BMC Bioinformatics (2009) 0.99
Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information. BMC Bioinformatics (2010) 0.99
Application of machine learning techniques in predicting MHC binders. Methods Mol Biol (2007) 0.99
BTXpred: prediction of bacterial toxins. In Silico Biol (2007) 0.98
Prediction and classification of ncRNAs using structural information. BMC Genomics (2014) 0.97
Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information. BMC Bioinformatics (2010) 0.96
RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information. Proteomics (2009) 0.96
Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides. Nucleic Acids Res (2013) 0.96
CancerDR: cancer drug resistance database. Sci Rep (2013) 0.96
A machine learning based method for the prediction of secretory proteins using amino acid composition, their order and similarity-search. In Silico Biol (2008) 0.93
KiDoQ: using docking based energy scores to develop ligand based model for predicting antibacterials. BMC Bioinformatics (2010) 0.93
GlycoPP: a webserver for prediction of N- and O-glycosites in prokaryotic protein sequences. PLoS One (2012) 0.93
Computational approach for designing tumor homing peptides. Sci Rep (2013) 0.92
Identification of mannose interacting residues using local composition. PLoS One (2011) 0.92
HIVsirDB: a database of HIV inhibiting siRNAs. PLoS One (2011) 0.91
Prediction of nuclear proteins using SVM and HMM models. BMC Bioinformatics (2009) 0.90
Designing of highly effective complementary and mismatch siRNAs for silencing a gene. PLoS One (2011) 0.90
PRRDB: a comprehensive database of pattern-recognition receptors and their ligands. BMC Genomics (2008) 0.90
Prediction of neurotoxins based on their function and source. In Silico Biol (2007) 0.90
ccPDB: compilation and creation of data sets from Protein Data Bank. Nucleic Acids Res (2011) 0.90
CyclinPred: a SVM-based method for predicting cyclin protein sequences. PLoS One (2008) 0.89
PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. BMC Bioinformatics (2013) 0.88
A simple approach for predicting protein-protein interactions. Curr Protein Pept Sci (2010) 0.88
Hmrbase: a database of hormones and their receptors. BMC Genomics (2009) 0.88
OxDBase: a database of oxygenases involved in biodegradation. BMC Res Notes (2009) 0.87
COPid: composition based protein identification. In Silico Biol (2008) 0.87
Prediction and classification of aminoacyl tRNA synthetases using PROSITE domains. BMC Genomics (2010) 0.86
Designing of interferon-gamma inducing MHC class-II binders. Biol Direct (2013) 0.86
A web server for predicting inhibitors against bacterial target GlmU protein. BMC Pharmacol (2011) 0.85
ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins. Nucleic Acids Res (2011) 0.85
Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway of Mycobacterium tuberculosis. BMC Bioinformatics (2010) 0.85
Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics. Brief Bioinform (2017) 0.84
Open source software and web services for designing therapeutic molecules. Curr Top Med Chem (2013) 0.84
Bridging innate and adaptive antitumor immunity targeting glycans. J Biomed Biotechnol (2010) 0.84
Hybrid approach for predicting coreceptor used by HIV-1 from its V3 loop amino acid sequence. PLoS One (2013) 0.82
Searching and mapping of B-cell epitopes in Bcipep database. Methods Mol Biol (2007) 0.82
Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information. BMC Bioinformatics (2013) 0.80
In silico models for B-cell epitope recognition and signaling. Methods Mol Biol (2013) 0.79
Peptide toxicity prediction. Methods Mol Biol (2015) 0.79
BIAdb: a curated database of benzylisoquinoline alkaloids. BMC Pharmacol (2010) 0.79
PolysacDB: a database of microbial polysaccharide antigens and their antibodies. PLoS One (2012) 0.78
Development of a model webserver for breed identification using microsatellite DNA marker. BMC Genet (2013) 0.77
In silico platform for predicting and initiating β-turns in a protein at desired locations. Proteins (2015) 0.77
Predicting virulence factors of immunological interest. Methods Mol Biol (2007) 0.76
Searching and mapping of T-cell epitopes, MHC binders, and TAP binders. Methods Mol Biol (2007) 0.76
Intrinsic contributions of polar amino acid residues toward thermal stability of an ABC-ATPase of mesophilic origin. Protein Sci (2003) 0.75
Searching haptens, carrier proteins, and anti-hapten antibodies. Methods Mol Biol (2007) 0.75