Published in BMC Bioinformatics on June 03, 2010
In silico platform for prediction of N-, O- and C-glycosites in eukaryotic protein sequences. PLoS One (2013) 1.29
TANGLE: two-level support vector regression approach for protein backbone torsion angle prediction from primary sequences. PLoS One (2012) 0.95
GlycoPP: a webserver for prediction of N- and O-glycosites in prokaryotic protein sequences. PLoS One (2012) 0.93
HemeBIND: a novel method for heme binding residue prediction by combining structural and sequence information. BMC Bioinformatics (2011) 0.89
Hybrid approach for predicting coreceptor used by HIV-1 from its V3 loop amino acid sequence. PLoS One (2013) 0.82
Identification of nucleotide-binding sites in protein structures: a novel approach based on nucleotide modularity. PLoS One (2012) 0.81
Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information. BMC Bioinformatics (2013) 0.80
Prediction of heme binding residues from protein sequences with integrative sequence profiles. Proteome Sci (2012) 0.78
A new supervised over-sampling algorithm with application to protein-nucleotide binding residue prediction. PLoS One (2014) 0.77
Nucleos: a web server for the identification of nucleotide-binding sites in protein structures. Nucleic Acids Res (2013) 0.75
Predicting flavin and nicotinamide adenine dinucleotide-binding sites in proteins using the fragment transformation method. Biomed Res Int (2015) 0.75
Incorporating efficient radial basis function networks and significant amino acid pairs for predicting GTP binding sites in transport proteins. BMC Bioinformatics (2016) 0.75
Protein ligand-specific binding residue predictions by an ensemble classifier. BMC Bioinformatics (2016) 0.75
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Prediction of RNA binding sites in a protein using SVM and PSSM profile. Proteins (2008) 2.40
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Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search. J Biol Chem (2005) 1.85
Identification of DNA-binding proteins using support vector machines and evolutionary profiles. BMC Bioinformatics (2007) 1.59
Prediction of beta-turns in proteins from multiple alignment using neural network. Protein Sci (2003) 1.57
Analysis and prediction of antibacterial peptides. BMC Bioinformatics (2007) 1.54
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Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes. J Theor Biol (2007) 1.23
Prediction of protein structural classes by support vector machines. Comput Chem (2002) 1.18
SuperSite: dictionary of metabolite and drug binding sites in proteins. Nucleic Acids Res (2008) 1.16
Identification of ATP binding residues of a protein from its primary sequence. BMC Bioinformatics (2009) 1.15
An empirical approach for detecting nucleotide-binding sites on proteins. Protein Eng Des Sel (2006) 1.12
ProtIdent: a web server for identifying proteases and their types by fusing functional domain and sequential evolution information. Biochem Biophys Res Commun (2008) 1.12
Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences. Nucleic Acids Res (2005) 1.11
Using grey dynamic modeling and pseudo amino acid composition to predict protein structural classes. J Comput Chem (2008) 0.95
Electrostatic potential of nucleotide-free protein is sufficient for discrimination between adenine and guanine-specific binding sites. J Mol Biol (2004) 0.95
A machine learning based method for the prediction of secretory proteins using amino acid composition, their order and similarity-search. In Silico Biol (2008) 0.93
Coupling interaction between thromboxane A2 receptor and alpha-13 subunit of guanine nucleotide-binding protein. J Proteome Res (2005) 0.90
Support vector machines for predicting the specificity of GalNAc-transferase. Peptides (2002) 0.81
Bcipep: a database of B-cell epitopes. BMC Genomics (2005) 2.27
Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search. J Biol Chem (2005) 1.85
Identification of DNA-binding proteins using support vector machines and evolutionary profiles. BMC Bioinformatics (2007) 1.59
Prediction of mitochondrial proteins using support vector machine and hidden Markov model. J Biol Chem (2005) 1.42
MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes. BMC Res Notes (2009) 1.41
Classification of nuclear receptors based on amino acid composition and dipeptide composition. J Biol Chem (2004) 1.36
Improved method for linear B-cell epitope prediction using antigen's primary sequence. PLoS One (2013) 1.34
In silico platform for prediction of N-, O- and C-glycosites in eukaryotic protein sequences. PLoS One (2013) 1.29
In silico approaches for designing highly effective cell penetrating peptides. J Transl Med (2013) 1.17
AntiBP2: improved version of antibacterial peptide prediction. BMC Bioinformatics (2010) 1.15
Identification of ATP binding residues of a protein from its primary sequence. BMC Bioinformatics (2009) 1.15
SVM based prediction of RNA-binding proteins using binding residues and evolutionary information. J Mol Recognit (2011) 1.13
NPACT: Naturally Occurring Plant-based Anti-cancer Compound-Activity-Target database. Nucleic Acids Res (2012) 1.11
Branching of the p-nitrophenol (PNP) degradation pathway in burkholderia sp. Strain SJ98: Evidences from genetic characterization of PNP gene cluster. AMB Express (2012) 1.10
TumorHoPe: a database of tumor homing peptides. PLoS One (2012) 1.07
ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins. BMC Bioinformatics (2008) 1.07
Identification of NAD interacting residues in proteins. BMC Bioinformatics (2010) 1.07
Prediction methods for B-cell epitopes. Methods Mol Biol (2007) 1.05
In silico approach for predicting toxicity of peptides and proteins. PLoS One (2013) 1.02
Prediction of polyadenylation signals in human DNA sequences using nucleotide frequencies. In Silico Biol (2009) 1.00
Prediction of guide strand of microRNAs from its sequence and secondary structure. BMC Bioinformatics (2009) 0.99
Application of machine learning techniques in predicting MHC binders. Methods Mol Biol (2007) 0.99
BTXpred: prediction of bacterial toxins. In Silico Biol (2007) 0.98
Prediction and classification of ncRNAs using structural information. BMC Genomics (2014) 0.97
Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information. BMC Bioinformatics (2010) 0.96
RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information. Proteomics (2009) 0.96
Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides. Nucleic Acids Res (2013) 0.96
CancerDR: cancer drug resistance database. Sci Rep (2013) 0.96
Machine learning techniques in disease forecasting: a case study on rice blast prediction. BMC Bioinformatics (2006) 0.95
GlycoPP: a webserver for prediction of N- and O-glycosites in prokaryotic protein sequences. PLoS One (2012) 0.93
A machine learning based method for the prediction of secretory proteins using amino acid composition, their order and similarity-search. In Silico Biol (2008) 0.93
KiDoQ: using docking based energy scores to develop ligand based model for predicting antibacterials. BMC Bioinformatics (2010) 0.93
Computational approach for designing tumor homing peptides. Sci Rep (2013) 0.92
Identification of mannose interacting residues using local composition. PLoS One (2011) 0.92
HIVsirDB: a database of HIV inhibiting siRNAs. PLoS One (2011) 0.91
Prediction of nuclear proteins using SVM and HMM models. BMC Bioinformatics (2009) 0.90
Designing of highly effective complementary and mismatch siRNAs for silencing a gene. PLoS One (2011) 0.90
PRRDB: a comprehensive database of pattern-recognition receptors and their ligands. BMC Genomics (2008) 0.90
Prediction of neurotoxins based on their function and source. In Silico Biol (2007) 0.90
ccPDB: compilation and creation of data sets from Protein Data Bank. Nucleic Acids Res (2011) 0.90
CyclinPred: a SVM-based method for predicting cyclin protein sequences. PLoS One (2008) 0.89
PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. BMC Bioinformatics (2013) 0.88
A simple approach for predicting protein-protein interactions. Curr Protein Pept Sci (2010) 0.88
Hmrbase: a database of hormones and their receptors. BMC Genomics (2009) 0.88
OxDBase: a database of oxygenases involved in biodegradation. BMC Res Notes (2009) 0.87
COPid: composition based protein identification. In Silico Biol (2008) 0.87
Prediction and classification of aminoacyl tRNA synthetases using PROSITE domains. BMC Genomics (2010) 0.86
Designing of interferon-gamma inducing MHC class-II binders. Biol Direct (2013) 0.86
A web server for predicting inhibitors against bacterial target GlmU protein. BMC Pharmacol (2011) 0.85
ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins. Nucleic Acids Res (2011) 0.85
Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway of Mycobacterium tuberculosis. BMC Bioinformatics (2010) 0.85
Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics. Brief Bioinform (2017) 0.84
Open source software and web services for designing therapeutic molecules. Curr Top Med Chem (2013) 0.84
Bridging innate and adaptive antitumor immunity targeting glycans. J Biomed Biotechnol (2010) 0.84
Hybrid approach for predicting coreceptor used by HIV-1 from its V3 loop amino acid sequence. PLoS One (2013) 0.82
Searching and mapping of B-cell epitopes in Bcipep database. Methods Mol Biol (2007) 0.82
Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information. BMC Bioinformatics (2013) 0.80
In silico models for B-cell epitope recognition and signaling. Methods Mol Biol (2013) 0.79
Peptide toxicity prediction. Methods Mol Biol (2015) 0.79
BIAdb: a curated database of benzylisoquinoline alkaloids. BMC Pharmacol (2010) 0.79
PolysacDB: a database of microbial polysaccharide antigens and their antibodies. PLoS One (2012) 0.78
Development of a model webserver for breed identification using microsatellite DNA marker. BMC Genet (2013) 0.77
In silico platform for predicting and initiating β-turns in a protein at desired locations. Proteins (2015) 0.77
Predicting virulence factors of immunological interest. Methods Mol Biol (2007) 0.76
Searching and mapping of T-cell epitopes, MHC binders, and TAP binders. Methods Mol Biol (2007) 0.76
Intrinsic contributions of polar amino acid residues toward thermal stability of an ABC-ATPase of mesophilic origin. Protein Sci (2003) 0.75
Searching haptens, carrier proteins, and anti-hapten antibodies. Methods Mol Biol (2007) 0.75