Published in Curr Opin Plant Biol on February 07, 2007
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. Genome Res (2008) 4.02
Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Mol Syst Biol (2010) 1.91
Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. PLoS One (2008) 1.53
Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Genetics (2012) 1.49
Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees. Syst Biol (2010) 1.36
Genomics and bioinformatics resources for crop improvement. Plant Cell Physiol (2010) 1.33
Mutant resources in rice for functional genomics of the grasses. Plant Physiol (2009) 1.25
Comparative network analysis reveals that tissue specificity and gene function are important factors influencing the mode of expression evolution in Arabidopsis and rice. Plant Physiol (2011) 1.21
Homeolog loss and expression changes in natural populations of the recently and repeatedly formed allotetraploid Tragopogon mirus (Asteraceae). BMC Genomics (2010) 1.12
Systematic localization of the Arabidopsis core cell cycle proteins reveals novel cell division complexes. Plant Physiol (2009) 1.10
Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa. BMC Genomics (2012) 1.10
New gateways to discovery. Plant Physiol (2007) 1.05
The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization. BMC Plant Biol (2010) 1.05
De novo genome assembly of the economically important weed horseweed using integrated data from multiple sequencing platforms. Plant Physiol (2014) 1.02
Evolutionary studies illuminate the structural-functional model of plant phytochromes. Plant Cell (2010) 1.02
Evolutionary and comparative analyses of the soybean genome. Breed Sci (2012) 1.02
Why assembling plant genome sequences is so challenging. Biology (Basel) (2012) 1.02
Unique genes in plants: specificities and conserved features throughout evolution. BMC Evol Biol (2008) 1.01
SNP markers retrieval for a non-model species: a practical approach. BMC Res Notes (2012) 0.93
The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics (2013) 0.91
Evolutionary diversification of plant shikimate kinase gene duplicates. PLoS Genet (2008) 0.90
An Exploration into Fern Genome Space. Genome Biol Evol (2015) 0.88
Arabidopsis thaliana mTERF proteins: evolution and functional classification. Front Plant Sci (2012) 0.87
SOLiD-SAGE of endophyte-infected red fescue reveals numerous effects on host transcriptome and an abundance of highly expressed fungal secreted proteins. PLoS One (2012) 0.86
Plant systems biology: insights, advances and challenges. Planta (2014) 0.83
Natural and artificial mutants as valuable resources for functional genomics and molecular breeding. Int J Biol Sci (2010) 0.83
Genome-wide analysis and expression profiling under heat and drought treatments of HSP70 gene family in soybean (Glycine max L.). Front Plant Sci (2015) 0.81
Identifying new components participating in the secondary cell wall formation of vessel elements in zinnia and Arabidopsis. Plant Cell (2009) 0.80
Insights into the evolution and diversification of the AT-hook Motif Nuclear Localized gene family in land plants. BMC Plant Biol (2014) 0.79
Gene divergence of homeologous regions associated with a major seed protein content QTL in soybean. Front Plant Sci (2013) 0.79
The plant proteome folding project: structure and positive selection in plant protein families. Genome Biol Evol (2012) 0.79
Turning over a new leaf in plant genomics. Genome Biol (2013) 0.79
Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics. Curr Genomics (2016) 0.75
OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis. BMC Genomics (2016) 0.75
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (2007) 8.12
The genome of the domesticated apple (Malus × domestica Borkh.). Nat Genet (2010) 8.07
The European database on small subunit ribosomal RNA. Nucleic Acids Res (2002) 7.80
Opinion: Re-evaluating prokaryotic species. Nat Rev Microbiol (2005) 7.19
The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature (2008) 6.70
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res (2002) 6.43
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS One (2007) 5.62
The hidden duplication past of Arabidopsis thaliana. Proc Natl Acad Sci U S A (2002) 5.00
Modeling gene and genome duplications in eukaryotes. Proc Natl Acad Sci U S A (2005) 5.00
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics (2004) 4.95
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature (2011) 4.94
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science (2007) 4.89
The Norway spruce genome sequence and conifer genome evolution. Nature (2013) 4.74
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet (2011) 4.65
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci U S A (2006) 4.52
ROS signaling: the new wave? Trends Plant Sci (2011) 4.45
Genome duplication, a trait shared by 22000 species of ray-finned fish. Genome Res (2003) 4.19
A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes. J Comput Biol (2002) 4.05
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science (2009) 4.05
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc Natl Acad Sci U S A (2004) 3.97
Genome-wide analysis of core cell cycle genes in Arabidopsis. Plant Cell (2002) 3.91
From 2R to 3R: evidence for a fish-specific genome duplication (FSGD). Bioessays (2005) 3.91
The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature (2010) 3.60
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci U S A (2007) 3.58
Genome duplication and the origin of angiosperms. Trends Ecol Evol (2005) 3.46
The genome of Tetranychus urticae reveals herbivorous pest adaptations. Nature (2011) 3.29
Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event. Proc Natl Acad Sci U S A (2009) 3.13
Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc Natl Acad Sci U S A (2004) 3.13
Current methods of gene prediction, their strengths and weaknesses. Nucleic Acids Res (2002) 3.12
Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Res (2004) 3.02
Genome-wide characterization of the lignification toolbox in Arabidopsis. Plant Physiol (2003) 2.90
Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc Natl Acad Sci U S A (2011) 2.84
Genome sequence of the recombinant protein production host Pichia pastoris. Nat Biotechnol (2009) 2.67
Robust biomarker identification for cancer diagnosis with ensemble feature selection methods. Bioinformatics (2009) 2.66
Evidence that rice and other cereals are ancient aneuploids. Plant Cell (2003) 2.62
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proc Natl Acad Sci U S A (2006) 2.61
The gain and loss of genes during 600 million years of vertebrate evolution. Genome Biol (2006) 2.58
PLAZA: a comparative genomics resource to study gene and genome evolution in plants. Plant Cell (2009) 2.43
The flowering world: a tale of duplications. Trends Plant Sci (2009) 2.38
CATMA: a complete Arabidopsis GST database. Nucleic Acids Res (2003) 2.34
Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature (2013) 2.26
An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens. BMC Evol Biol (2007) 2.17
INCLUSive: integrated clustering, upstream sequence retrieval and motif sampling. Bioinformatics (2002) 2.13
A molecular timetable for apical bud formation and dormancy induction in poplar. Plant Cell (2007) 2.08
The Mycobacterium tuberculosis regulatory network and hypoxia. Nature (2013) 2.04
Dissecting plant genomes with the PLAZA comparative genomics platform. Plant Physiol (2011) 1.98
Gene duplication and biased functional retention of paralogs in bacterial genomes. Trends Microbiol (2004) 1.94
Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Mol Syst Biol (2010) 1.91
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles. Bioinformatics (2008) 1.91
GenomeView: a next-generation genome browser. Nucleic Acids Res (2011) 1.91
Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks. Plant Physiol (2009) 1.90
Towards a prokaryotic genomic taxonomy. FEMS Microbiol Rev (2005) 1.87
Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana. Genome Biol (2006) 1.85
Genome-wide identification of potential plant E2F target genes. Plant Physiol (2005) 1.85
Generic eukaryotic core promoter prediction using structural features of DNA. Genome Res (2007) 1.80
ERF115 controls root quiescent center cell division and stem cell replenishment. Science (2013) 1.74
A transgenic mouse marking live replicating cells reveals in vivo transcriptional program of proliferation. Dev Cell (2012) 1.72
Catalase deficiency drastically affects gene expression induced by high light in Arabidopsis thaliana. Plant J (2004) 1.71
EST data suggest that poplar is an ancient polyploid. New Phytol (2005) 1.70
i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles. Bioinformatics (2007) 1.68
Type II metacaspases Atmc4 and Atmc9 of Arabidopsis thaliana cleave substrates after arginine and lysine. J Biol Chem (2004) 1.59
Structural diversification and neo-functionalization during floral MADS-box gene evolution by C-terminal frameshift mutations. Nucleic Acids Res (2003) 1.54
CLE peptides control Medicago truncatula nodulation locally and systemically. Plant Physiol (2010) 1.52
i-ADHoRe 3.0--fast and sensitive detection of genomic homology in extremely large data sets. Nucleic Acids Res (2011) 1.51
Analysis of the Olive Fruit Fly Bactrocera oleae Transcriptome and Phylogenetic Classification of the Major Detoxification Gene Families. PLoS One (2013) 1.51
Computational approaches to identify promoters and cis-regulatory elements in plant genomes. Plant Physiol (2003) 1.50
Transcriptome analysis during cell division in plants. Proc Natl Acad Sci U S A (2002) 1.49