Published in PLoS One on March 14, 2007
Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2007) 2.29
Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor). Genome Biol (2011) 2.02
Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers. PLoS One (2011) 1.84
Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding. BMC Genomics (2009) 1.21
Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response. BMC Genomics (2009) 1.17
Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array. BMC Genomics (2008) 0.99
Detection of genomic deletions in rice using oligonucleotide microarrays. BMC Genomics (2009) 0.99
Detection of copy number variations in rice using array-based comparative genomic hybridization. BMC Genomics (2011) 0.98
Characterization of Capsicum annuum genetic diversity and population structure based on parallel polymorphism discovery with a 30K unigene Pepper GeneChip. PLoS One (2013) 0.97
Gene expression profiles deciphering rice phenotypic variation between Nipponbare (Japonica) and 93-11 (Indica) during oxidative stress. PLoS One (2010) 0.96
Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays. BMC Genomics (2009) 0.96
Rice Snl6, a cinnamoyl-CoA reductase-like gene family member, is required for NH1-mediated immunity to Xanthomonas oryzae pv. oryzae. PLoS Genet (2010) 0.95
Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars. BMC Genomics (2011) 0.94
Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.). BMC Genomics (2012) 0.94
Single-feature polymorphism discovery by computing probe affinity shape powers. BMC Genet (2009) 0.91
Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array. BMC Plant Biol (2009) 0.88
High-throughput marker discovery in melon using a self-designed oligo microarray. BMC Genomics (2010) 0.84
A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) in Eucalyptus. BMC Genomics (2011) 0.84
Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays. BMC Genomics (2008) 0.83
High-resolution genotyping via whole genome hybridizations to microarrays containing long oligonucleotide probes. PLoS One (2010) 0.83
'maskBAD'--a package to detect and remove Affymetrix probes with binding affinity differences. BMC Bioinformatics (2012) 0.82
SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip. BMC Bioinformatics (2009) 0.81
Single-feature polymorphism mapping of isogenic rice lines identifies the influence of terpene synthase on brown planthopper feeding preferences. Rice (N Y) (2013) 0.78
A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays. BMC Genomics (2010) 0.76
An improved algorithm for the detection of genomic variation using short oligonucleotide expression microarrays. Mol Ecol Resour (2012) 0.75
Extracting genotype information of Arabidopsis thaliana recombinant inbred lines from transcript profiles established with high-density oligonucleotide arrays. Plant Cell Rep (2017) 0.75
Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A (2001) 132.88
The map-based sequence of the rice genome. Nature (2005) 24.17
Whole-genome patterns of common DNA variation in three human populations. Science (2005) 21.22
Large-scale identification of single-feature polymorphisms in complex genomes. Genome Res (2003) 6.04
Genetic structure and diversity in Oryza sativa L. Genetics (2005) 5.74
Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you. Plant Physiol (2000) 4.88
Genetic diversity in yeast assessed with whole-genome oligonucleotide arrays. Genetics (2003) 2.68
An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments. Genome Res (2004) 2.56
FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions. Genetics (2005) 2.32
Single-feature polymorphism discovery in the barley transcriptome. Genome Biol (2005) 2.15
Plant molecular diversity and applications to genomics. Curr Opin Plant Biol (2002) 2.12
Rapid array mapping of circadian clock and developmental mutations in Arabidopsis. Plant Physiol (2005) 2.07
Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana. Genetics (2004) 2.00
Development of genome-wide DNA polymorphism database for map-based cloning of rice genes. Plant Physiol (2004) 1.98
Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit. Bioinformatics (2005) 1.79
QTL mapping of grain quality traits from the interspecific cross Oryza sativa x O. glaberrima. Theor Appl Genet (2004) 1.48
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Association mapping with single-feature polymorphisms. Genetics (2006) 1.25
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Genome sequence of the palaeopolyploid soybean. Nature (2010) 17.82
Posttranscriptional control of T cell effector function by aerobic glycolysis. Cell (2013) 6.30
Improved statistical tests for differential gene expression by shrinking variance components estimates. Biostatistics (2005) 5.57
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biol (2008) 4.78
Long-term monitoring shows hepatitis B virus resistance to entecavir in nucleoside-naïve patients is rare through 5 years of therapy. Hepatology (2009) 4.00
Enhanced computer vision with Microsoft Kinect sensor: a review. IEEE Trans Cybern (2013) 3.75
Slug antagonizes p53-mediated apoptosis of hematopoietic progenitors by repressing puma. Cell (2005) 3.73
Comparative DNA sequence analysis of wheat and rice genomes. Genome Res (2003) 3.63
Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born. J Chem Theory Comput (2012) 3.40
Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing. Cancer Res (2007) 3.40
Graph embedding and extensions: a general framework for dimensionality reduction. IEEE Trans Pattern Anal Mach Intell (2007) 3.06
The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms. Genome Res (2003) 2.62
Imaging tumor-stroma interactions during chemotherapy reveals contributions of the microenvironment to resistance. Cancer Cell (2012) 2.61
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation. Proc Natl Acad Sci U S A (2003) 2.52
Root growth maintenance during water deficits: physiology to functional genomics. J Exp Bot (2004) 2.51
Inferring gene regulatory networks from multiple microarray datasets. Bioinformatics (2006) 2.49
B lymphocyte stimulator overexpression in patients with systemic lupus erythematosus: longitudinal observations. Arthritis Rheum (2003) 2.47
An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants. Plant J (2010) 2.41
Visualization of nitric oxide in living cells by a copper-based fluorescent probe. Nat Chem Biol (2006) 2.33
Local production of B lymphocyte stimulator protein and APRIL in arthritic joints of patients with inflammatory arthritis. Arthritis Rheum (2003) 2.21
Ensemble-based virtual screening reveals potential novel antiviral compounds for avian influenza neuraminidase. J Med Chem (2008) 2.14
Understanding regulatory networks and engineering for enhanced drought tolerance in plants. Curr Opin Plant Biol (2006) 1.95
Understanding the unique characteristics of suicide in China: national psychological autopsy study. Biomed Environ Sci (2005) 1.90
Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates. Proc Natl Acad Sci U S A (2003) 1.90
Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Bioinformatics (2002) 1.81
Microarray analysis of chitin elicitation in Arabidopsis thaliana. Mol Plant Pathol (2002) 1.80
Genome-wide DNA methylation analysis reveals novel epigenetic changes in chronic lymphocytic leukemia. Epigenetics (2012) 1.80
Physiological and molecular approaches to improve drought resistance in soybean. Plant Cell Physiol (2009) 1.76
Epidermal growth factor-like domain 7 protects endothelial cells from hyperoxia-induced cell death. Am J Physiol Lung Cell Mol Physiol (2007) 1.75
Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples. Biotechniques (2004) 1.74
Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. Genome Res (2013) 1.72
Nonlegumes respond to rhizobial Nod factors by suppressing the innate immune response. Science (2013) 1.72
Photoaffinity isolation and identification of proteins in cancer cell extracts that bind to platinum-modified DNA. Chembiochem (2009) 1.71
Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae. Nucleic Acids Res (2004) 1.71
The activation of natural killer cell effector functions by cetuximab-coated, epidermal growth factor receptor positive tumor cells is enhanced by cytokines. Clin Cancer Res (2007) 1.66
Efficacy of entecavir in chronic hepatitis B patients with mildly elevated alanine aminotransferase and biopsy-proven histological damage. Hepatology (2010) 1.61
Long-term treatment with entecavir induces reversal of advanced fibrosis or cirrhosis in patients with chronic hepatitis B. Clin Gastroenterol Hepatol (2010) 1.60
Molecular evolution of lysin motif-type receptor-like kinases in plants. Plant Physiol (2007) 1.59
Musite, a tool for global prediction of general and kinase-specific phosphorylation sites. Mol Cell Proteomics (2010) 1.55
Comparisons among two fertile and three male-sterile mitochondrial genomes of maize. Genetics (2007) 1.53
Targeting CD37-positive lymphoid malignancies with a novel engineered small modular immunopharmaceutical. Blood (2007) 1.51
No supernovae associated with two long-duration gamma-ray bursts. Nature (2006) 1.47
CUBIC: identification of regulatory binding sites through data clustering. J Bioinform Comput Biol (2003) 1.47
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SNP discovery by high-throughput sequencing in soybean. BMC Genomics (2010) 1.45
Identification of a plant receptor for extracellular ATP. Science (2014) 1.44
Preoperative rosuvastatin protects patients with coronary artery disease undergoing noncardiac surgery. Cardiology (2015) 1.43
DNA vaccine encoding Der p 2 allergen generates immunologic protection in recombinant Der p 2 allergen-induced allergic airway inflammation mice model. Chin Med J (Engl) (2005) 1.43
MUFOLD: A new solution for protein 3D structure prediction. Proteins (2010) 1.42
SoyDB: a knowledge database of soybean transcription factors. BMC Plant Biol (2010) 1.40
Characterizing loop dynamics and ligand recognition in human- and avian-type influenza neuraminidases via generalized born molecular dynamics and end-point free energy calculations. J Am Chem Soc (2009) 1.40
Stereoselective degradation kinetics of theta-cypermethrin in rats. Environ Sci Technol (2006) 1.39
Prediction of novel miRNAs and associated target genes in Glycine max. BMC Bioinformatics (2010) 1.39
Cell wall proteome in the maize primary root elongation zone. II. Region-specific changes in water soluble and lightly ionically bound proteins under water deficit. Plant Physiol (2007) 1.37
PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands. Bioinformatics (2008) 1.35
Computational identification of protein methylation sites through bi-profile Bayes feature extraction. PLoS One (2009) 1.34
BAFF overexpression and accelerated glomerular disease in mice with an incomplete genetic predisposition to systemic lupus erythematosus. Arthritis Rheum (2005) 1.33
Evaluation of candidate reference genes for normalization of quantitative RT-PCR in soybean tissues under various abiotic stress conditions. PLoS One (2012) 1.32
Identification and mapping of the QTL for aluminum tolerance introgressed from the new source, Oryza Rufipogon Griff., into indica rice (Oryza sativa L.). Theor Appl Genet (2002) 1.32
P3DB: a plant protein phosphorylation database. Nucleic Acids Res (2008) 1.31
Legume transcription factor genes: what makes legumes so special? Plant Physiol (2009) 1.30
Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes. BMC Evol Biol (2004) 1.30
Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics. BMC Genomics (2012) 1.29
Transcriptional and physiological responses of Bradyrhizobium japonicum to desiccation-induced stress. J Bacteriol (2007) 1.29
Proteomic analysis of soybean root hairs after infection by Bradyrhizobium japonicum. Mol Plant Microbe Interact (2005) 1.27
Molecular characterization of stress-inducible GmNAC genes in soybean. Mol Genet Genomics (2009) 1.27
Genomic and genetic evidence for the loss of umami taste in bats. Genome Biol Evol (2011) 1.27
Using Internet search engines to obtain medical information: a comparative study. J Med Internet Res (2012) 1.25
Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae. OMICS (2004) 1.25
Understanding protein dispensability through machine-learning analysis of high-throughput data. Bioinformatics (2004) 1.24
A protocol for computer-based protein structure and function prediction. J Vis Exp (2011) 1.23
Root hair systems biology. Trends Plant Sci (2010) 1.21
Molecular genetics of heat tolerance and heat shock proteins in cereals. Plant Mol Biol (2002) 1.20
QTL, additive and epistatic effects for SCN resistance in PI 437654. Theor Appl Genet (2009) 1.20
Genome-scale probe and primer design with PRIMEGENS. Methods Mol Biol (2007) 1.20
Mosaic: making biological sense of complex networks. Bioinformatics (2012) 1.19
A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjögren's syndrome at 7q11.23. Nat Genet (2013) 1.19
Homolog-specific PCR primer design for profiling splice variants. Nucleic Acids Res (2011) 1.19
PROSPECT II: protein structure prediction program for genome-scale applications. Protein Eng (2003) 1.19
Visual event recognition in videos by learning from Web data. IEEE Trans Pattern Anal Mach Intell (2012) 1.18