Published in Proc Natl Acad Sci U S A on May 14, 2007
Whole genome amplification and de novo assembly of single bacterial cells. PLoS One (2009) 4.65
Assembling the marine metagenome, one cell at a time. PLoS One (2009) 4.10
Genomic sequencing of single microbial cells from environmental samples. Curr Opin Microbiol (2008) 3.99
Community-wide analysis of microbial genome sequence signatures. Genome Biol (2009) 3.96
Microbial ecology of the dark ocean above, at, and below the seafloor. Microbiol Mol Biol Rev (2011) 2.97
Genomic sequencing of uncultured microorganisms from single cells. Nat Rev Microbiol (2012) 2.45
Predominant archaea in marine sediments degrade detrital proteins. Nature (2013) 2.41
Microbial life under extreme energy limitation. Nat Rev Microbiol (2013) 2.37
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean. Proc Natl Acad Sci U S A (2013) 2.27
The future is now: single-cell genomics of bacteria and archaea. FEMS Microbiol Rev (2013) 2.10
Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill. Proc Natl Acad Sci U S A (2011) 2.00
Decontamination of MDA reagents for single cell whole genome amplification. PLoS One (2011) 1.91
New abundant microbial groups in aquatic hypersaline environments. Sci Rep (2011) 1.84
Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park. Biol Direct (2013) 1.75
Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges. ISME J (2010) 1.66
Accurate genome relative abundance estimation based on shotgun metagenomic reads. PLoS One (2011) 1.62
High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. ISME J (2011) 1.55
Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia. PLoS One (2012) 1.44
Marine metagenomics: strategies for the discovery of novel enzymes with biotechnological applications from marine environments. Microb Cell Fact (2008) 1.32
The active human gut microbiota differs from the total microbiota. PLoS One (2011) 1.30
Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments. Extremophiles (2008) 1.26
Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors. Proc Natl Acad Sci U S A (2014) 1.23
Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. ISME J (2012) 1.21
Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics. Elife (2014) 1.21
What's new is old: resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH. PLoS One (2011) 1.20
Capturing diversity of marine heterotrophic protists: one cell at a time. ISME J (2010) 1.18
Microbial metabolomics. Curr Genomics (2011) 1.17
Marine metagenomics: new tools for the study and exploitation of marine microbial metabolism. Mar Drugs (2010) 1.15
Merging taxonomy with ecological population prediction in a case study of Vibrionaceae. Appl Environ Microbiol (2011) 1.14
Artificial polyploidy improves bacterial single cell genome recovery. PLoS One (2012) 1.10
Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics. Nat Protoc (2014) 1.10
Bacterial chitin degradation-mechanisms and ecophysiological strategies. Front Microbiol (2013) 1.09
Unveiling in situ interactions between marine protists and bacteria through single cell sequencing. ISME J (2011) 1.09
Differential gene retention in plastids of common recent origin. Mol Biol Evol (2010) 1.09
Microbial iron mats at the Mid-Atlantic Ridge and evidence that Zetaproteobacteria may be restricted to iron-oxidizing marine systems. PLoS One (2015) 1.08
Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem. Front Microbiol (2013) 1.05
Community-wide plasmid gene mobilization and selection. ISME J (2013) 1.03
New Vibrio species associated to molluscan microbiota: a review. Front Microbiol (2014) 1.03
Marine viruses, a genetic reservoir revealed by targeted viromics. ISME J (2013) 1.01
Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis. ISME J (2012) 1.01
Resolving genetic functions within microbial populations: in situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell raman-fluorescence in situ hybridization. Appl Environ Microbiol (2008) 1.00
Optimizing Taq polymerase concentration for improved signal-to-noise in the broad range detection of low abundance bacteria. PLoS One (2009) 1.00
Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount. ISME J (2015) 0.99
Microbial activity in the marine deep biosphere: progress and prospects. Front Microbiol (2013) 0.99
Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. strain MED134. Appl Environ Microbiol (2011) 0.98
Genomic mining for novel FADH₂-dependent halogenases in marine sponge-associated microbial consortia. Mar Biotechnol (NY) (2012) 0.97
Beyond the genome: community-level analysis of the microbial world. Biol Philos (2012) 0.95
Optofluidic cell selection from complex microbial communities for single-genome analysis. Methods Enzymol (2013) 0.93
Building on basic metagenomics with complementary technologies. Genome Biol (2007) 0.93
Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales. ISME J (2016) 0.93
Cell sorting analysis of geographically separated hypersaline environments. Extremophiles (2013) 0.92
Rapid resonance Raman microspectroscopy to probe carbon dioxide fixation by single cells in microbial communities. ISME J (2011) 0.91
Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi. ISME J (2013) 0.91
The genome of Pseudomonas fluorescens strain R124 demonstrates phenotypic adaptation to the mineral environment. J Bacteriol (2013) 0.89
Multiple single-cell genomes provide insight into functions of uncultured Deltaproteobacteria in the human oral cavity. PLoS One (2013) 0.88
A culture-independent approach to unravel uncultured bacteria and functional genes in a complex microbial community. PLoS One (2012) 0.87
Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers. ISME J (2015) 0.87
Emerging strategies and integrated systems microbiology technologies for biodiscovery of marine bioactive compounds. Mar Drugs (2014) 0.87
Analysis of the fine-scale population structure of "Candidatus accumulibacter phosphatis" in enhanced biological phosphorus removal sludge, using fluorescence in situ hybridization and flow cytometric sorting. Appl Environ Microbiol (2010) 0.87
Single cell genome analysis supports a link between phagotrophy and primary plastid endosymbiosis. Sci Rep (2012) 0.86
Planktonic microbes in the Gulf of Maine area. PLoS One (2011) 0.85
Microorganisms with novel dissimilatory (bi)sulfite reductase genes are widespread and part of the core microbiota in low-sulfate peatlands. Appl Environ Microbiol (2010) 0.85
Testing the reproducibility of multiple displacement amplification on genomes of clonal endosymbiont populations. PLoS One (2013) 0.84
Nanoarchaeota, Their Sulfolobales Host, and Nanoarchaeota Virus Distribution across Yellowstone National Park Hot Springs. Appl Environ Microbiol (2015) 0.84
Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology. Microbiol Mol Biol Rev (2016) 0.84
The next meta-challenge for Bioinformatics. Bioinformation (2008) 0.83
The National DNA Data Bank of Canada: a Quebecer perspective. Front Genet (2013) 0.83
Abundant Atribacteria in deep marine sediment from the Adélie Basin, Antarctica. Front Microbiol (2015) 0.81
Targeted sorting of single virus-infected cells of the coccolithophore Emiliania huxleyi. PLoS One (2011) 0.81
Grappling with Proteus: population level approaches to understanding microbial diversity. Front Microbiol (2012) 0.81
Rapid shifts in the structure and composition of a protistan assemblage during bottle incubations affect estimates of total protistan species richness. Microb Ecol (2011) 0.81
Ecological Genomics of the Uncultivated Marine Roseobacter Lineage CHAB-I-5. Appl Environ Microbiol (2016) 0.80
Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population. Front Microbiol (2015) 0.79
Single cell genome analysis of an uncultured heterotrophic stramenopile. Sci Rep (2014) 0.79
Preparation of genomic DNA from a single species of uncultured magnetotactic bacterium by multiple-displacement amplification. Appl Environ Microbiol (2010) 0.79
Single gene-based distinction of individual microbial genomes from a mixed population of microbial cells. Front Microbiol (2015) 0.79
Recent advances and future perspectives in microbial phototrophy in antarctic sea ice. Biology (Basel) (2012) 0.78
Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts. Sci Rep (2017) 0.78
Direct squencing from the minimal number of DNA molecules needed to fill a 454 picotiterplate. PLoS One (2014) 0.77
Survey of the green picoalga Bathycoccus genomes in the global ocean. Sci Rep (2016) 0.76
The rise and fall of Picobiliphytes: how assumed autotrophs turned out to be heterotrophs. Bioessays (2014) 0.76
Preparation of Phi29 DNA polymerase free of amplifiable DNA using ethidium monoazide, an ultraviolet-free light-emitting diode lamp and trehalose. PLoS One (2014) 0.76
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol (2017) 0.76
Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells. Sci Rep (2017) 0.75
Identification of Associations between Bacterioplankton and Photosynthetic Picoeukaryotes in Coastal Waters. Front Microbiol (2016) 0.75
Comparative Single-Cell Genomics of Chloroflexi from the Okinawa Trough Deep-Subsurface Biosphere. Appl Environ Microbiol (2016) 0.75
New aminopeptidase from "microbial dark matter" archaeon. FASEB J (2015) 0.75
Tools for Genomic and Transcriptomic Analysis of Microbes at Single-Cell Level. Front Microbiol (2017) 0.75
Exploring Microdiversity in Novel Kordia sp. (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes. Front Microbiol (2017) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Environmental genome shotgun sequencing of the Sargasso Sea. Science (2004) 45.23
Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res (2003) 38.75
Comparative metagenomics of microbial communities. Science (2005) 25.88
The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol (2007) 23.58
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res (2003) 18.64
Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci U S A (2002) 13.58
Community genomics among stratified microbial assemblages in the ocean's interior. Science (2006) 13.31
Amplification and analysis of DNA sequences in single human sperm and diploid cells. Nature (1988) 10.84
Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science (2000) 10.82
Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl Environ Microbiol (2000) 8.35
Genome streamlining in a cosmopolitan oceanic bacterium. Science (2005) 8.11
Sequencing genomes from single cells by polymerase cloning. Nat Biotechnol (2006) 7.64
Overview of the marine roseobacter lineage. Appl Environ Microbiol (2005) 5.79
Proteorhodopsin phototrophy in the ocean. Nature (2001) 5.73
The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol (2002) 5.14
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature (2004) 5.00
Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing. BMC Genomics (2006) 4.55
Genomic DNA amplification from a single bacterium. Appl Environ Microbiol (2005) 4.25
Microfluidic digital PCR enables multigene analysis of individual environmental bacteria. Science (2006) 3.84
Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean. Science (2001) 3.62
Cell-free cloning using phi29 DNA polymerase. Proc Natl Acad Sci U S A (2005) 3.54
Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea. Nature (2006) 3.27
Light stimulates growth of proteorhodopsin-containing marine Flavobacteria. Nature (2007) 3.20
Expression of nifH genes in natural microbial assemblages in Lake George, New York, detected by reverse transcriptase PCR. Appl Environ Microbiol (2000) 2.61
Diversification and spectral tuning in marine proteorhodopsins. EMBO J (2003) 2.53
Biotechnological prospects from metagenomics. Curr Opin Biotechnol (2003) 2.32
Environmental whole-genome amplification to access microbial populations in contaminated sediments. Appl Environ Microbiol (2006) 2.24
Genomic perspectives in microbial oceanography. Nature (2005) 1.99
Different SAR86 subgroups harbour divergent proteorhodopsins. Environ Microbiol (2004) 1.93
Novel Proteorhodopsin variants from the Mediterranean and Red Seas. Environ Microbiol (2003) 1.67
Optimization and evaluation of single-cell whole-genome multiple displacement amplification. Hum Mutat (2006) 1.48
Single-cell genomics. Nat Biotechnol (2006) 1.25
Ecological and biogeographic relationships of class Flavobacteria in the Southern Ocean. FEMS Microbiol Ecol (2005) 1.24
Multiple displacement amplification on single cell and possible PGD applications. Mol Hum Reprod (2004) 1.20
Genome amplification of single sperm using multiple displacement amplification. Nucleic Acids Res (2005) 1.16
Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton. FEMS Microbiol Ecol (2001) 1.07
Rapid isolation of single microbial cells from mixed natural and laboratory populations with the aid of a micromanipulator. Syst Appl Microbiol (1999) 1.06
Diversity and detection of nitrate assimilation genes in marine bacteria. Appl Environ Microbiol (2001) 1.05
Assembling the marine metagenome, one cell at a time. PLoS One (2009) 4.10
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science (2011) 3.12
A holistic approach to marine eco-systems biology. PLoS Biol (2011) 2.71
Single-cell genomics reveals organismal interactions in uncultivated marine protists. Science (2011) 1.90
High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. ISME J (2011) 1.55
Phylogenetic diversity and specificity of bacteria closely associated with Alexandrium spp. and other phytoplankton. Appl Environ Microbiol (2005) 1.42
Capturing diversity of marine heterotrophic protists: one cell at a time. ISME J (2010) 1.18
Unveiling in situ interactions between marine protists and bacteria through single cell sequencing. ISME J (2011) 1.09
Taming the smallest predators of the oceans. ISME J (2012) 0.86
Planktonic microbes in the Gulf of Maine area. PLoS One (2011) 0.85
Targeted sorting of single virus-infected cells of the coccolithophore Emiliania huxleyi. PLoS One (2011) 0.81