EuroPhenome and EMPReSS: online mouse phenotyping resource.

PubWeight™: 2.54‹?› | Rank: Top 2%

🔗 View Article (PMC 2238991)

Published in Nucleic Acids Res on September 28, 2007

Authors

Ann-Marie Mallon1, Andrew Blake, John M Hancock

Author Affiliations

1: MRC Mammalian Genetics Unit, Harwell, Oxfordshire, OX11 0RD, UK. a.mallon@har.mrc.ac.uk

Articles citing this

The Ontology Lookup Service: more data and better tools for controlled vocabulary queries. Nucleic Acids Res (2008) 4.73

The International Mouse Phenotyping Consortium: past and future perspectives on mouse phenotyping. Mamm Genome (2012) 3.16

The mammalian phenotype ontology: enabling robust annotation and comparative analysis. Wiley Interdiscip Rev Syst Biol Med (2010) 3.00

EuroPhenome: a repository for high-throughput mouse phenotyping data. Nucleic Acids Res (2009) 2.72

A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains. Genome Biol (2013) 2.04

EMMA--mouse mutant resources for the international scientific community. Nucleic Acids Res (2009) 1.75

Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data. BMC Bioinformatics (2009) 1.70

Accessing data from the International Mouse Phenotyping Consortium: state of the art and future plans. Mamm Genome (2012) 1.63

Integrating mouse anatomy and pathology ontologies into a phenotyping database: tools for data capture and training. Mamm Genome (2008) 1.62

Towards better mouse models: enhanced genotypes, systemic phenotyping and envirotype modelling. Nat Rev Genet (2009) 1.59

Clinical biochemistry parameters in C57BL/6J mice after blood collection from the submandibular vein and retroorbital plexus. J Am Assoc Lab Anim Sci (2010) 1.43

Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics. Nat Genet (2015) 1.38

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease. Mamm Genome (2009) 1.31

Mouse genetic and phenotypic resources for human genetics. Hum Mutat (2012) 1.18

A data-capture tool for mouse pathology phenotyping. Vet Pathol (2009) 1.14

The Geropathology Research Network: An Interdisciplinary Approach for Integrating Pathology Into Research on Aging. J Gerontol A Biol Sci Med Sci (2015) 1.12

The mouse genetics toolkit: revealing function and mechanism. Genome Biol (2011) 1.05

Mouse models in male fertility research. Asian J Androl (2010) 1.01

The Moonwalker mouse: new insights into TRPC3 function, cerebellar development, and ataxia. Cerebellum (2014) 0.94

Genetic Background Limits Generalizability of Genotype-Phenotype Relationships. Neuron (2016) 0.90

Removing the cloak of invisibility: phenotyping the mouse. Dis Model Mech (2008) 0.90

ENU mutagenesis reveals a novel phenotype of reduced limb strength in mice lacking fibrillin 2. PLoS One (2010) 0.87

Towards the integration of mouse databases - definition and implementation of solutions to two use-cases in mouse functional genomics. BMC Res Notes (2010) 0.85

Where's the mouse info? Vet Pathol (2009) 0.83

MouseBook: an integrated portal of mouse resources. Nucleic Acids Res (2009) 0.82

Modeling resilience to schizophrenia in genetically modified mice: a novel approach to drug discovery. Expert Rev Neurother (2012) 0.81

Cardiomyopathy and response to enzyme replacement therapy in a male mouse model for Fabry disease. PLoS One (2012) 0.80

Anatomy ontologies and potential users: bridging the gap. J Biomed Semantics (2011) 0.80

In vivo functional requirement of the mouse Ifitm1 gene for germ cell development, interferon mediated immune response and somitogenesis. PLoS One (2012) 0.79

A new ex vivo method to evaluate the performance of candidate MRI contrast agents: a proof-of-concept study. J Nanobiotechnology (2014) 0.77

Scaling up phenotyping studies. Nat Biotechnol (2015) 0.75

Articles by these authors

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96

Using ontologies to describe mouse phenotypes. Genome Biol (2004) 7.03

Post-publication sharing of data and tools. Nature (2009) 4.46

Understanding mammalian genetic systems: the challenge of phenotyping in the mouse. PLoS Genet (2006) 3.14

BioMart Central Portal: an open database network for the biological community. Database (Oxford) (2011) 3.03

EuroPhenome: a repository for high-throughput mouse phenotyping data. Nucleic Acids Res (2009) 2.72

Planning the human variome project: the Spain report. Hum Mutat (2009) 2.22

The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Nucleic Acids Res (2013) 2.20

A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains. Genome Biol (2013) 2.04

Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res (2010) 1.97

PlantProm: a database of plant promoter sequences. Nucleic Acids Res (2003) 1.86

Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources. Mamm Genome (2007) 1.75

Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data. BMC Bioinformatics (2009) 1.70

EMPReSS: European mouse phenotyping resource for standardized screens. Bioinformatics (2005) 1.69

Models for financial sustainability of biological databases and resources. Database (Oxford) (2009) 1.64

Sparse Bayesian learning for efficient visual tracking. IEEE Trans Pattern Anal Mach Intell (2005) 1.54

The functional annotation of mammalian genomes: the challenge of phenotyping. Annu Rev Genet (2009) 1.54

Solutions for data integration in functional genomics: a critical assessment and case study. Brief Bioinform (2008) 1.47

Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop. Stand Genomic Sci (2010) 1.35

Phenotype ontologies for mouse and man: bridging the semantic gap. Dis Model Mech (2010) 1.28

Towards BioDBcore: a community-defined information specification for biological databases. Database (Oxford) (2011) 1.24

Efficient human pose estimation from single depth images. IEEE Trans Pattern Anal Mach Intell (2013) 1.22

Research funding. Sustaining the data and bioresource commons. Science (2010) 1.21

Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins. Genome Biol (2009) 1.21

CRAVE: a database, middleware and visualization system for phenotype ontologies. Bioinformatics (2004) 1.15

Organization and evolution of a gene-rich region of the mouse genome: a 12.7-Mb region deleted in the Del(13)Svea36H mouse. Genome Res (2004) 1.12

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences. Database (Oxford) (2010) 1.08

Detecting cryptically simple protein sequences using the SIMPLE algorithm. Bioinformatics (2002) 1.08

XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments. Genome Biol (2010) 1.07

Fusion moves for Markov random field optimization. IEEE Trans Pattern Anal Mach Intell (2010) 0.92

Phenostat: visualization and statistical tool for analysis of phenotyping data. Mamm Genome (2007) 0.90

Probabilistic fusion of stereo with color and contrast for bilayer segmentation. IEEE Trans Pattern Anal Mach Intell (2006) 0.90

Discriminative, semantic segmentation of brain tissue in MR images. Med Image Comput Comput Assist Interv (2009) 0.89

Phylogenetic inference under recombination using Bayesian stochastic topology selection. Bioinformatics (2008) 0.89

A kinetic core model of the glucose-stimulated insulin secretion network of pancreatic beta cells. Mamm Genome (2007) 0.88

Multiscale categorical object recognition using contour fragments. IEEE Trans Pattern Anal Mach Intell (2008) 0.87

Mathematical modelling of animate and intentional motion. Philos Trans R Soc Lond B Biol Sci (2003) 0.85

A gene-phenotype network for the laboratory mouse and its implications for systematic phenotyping. PLoS One (2011) 0.85

NucleoFinder: a statistical approach for the detection of nucleosome positions. Bioinformatics (2013) 0.85

Specular reflections and the estimation of shape from binocular disparity. Proc Natl Acad Sci U S A (2013) 0.84

Analyzing gene expression data in mice with the Neuro Behavior Ontology. Mamm Genome (2013) 0.84

Mouse Resource Browser--a database of mouse databases. Database (Oxford) (2010) 0.83

Thymic nurse cells exhibit epithelial progenitor phenotype and create unique extra-cytoplasmic membrane space for thymocyte selection. Cell Immunol (2009) 0.83

MouseBook: an integrated portal of mouse resources. Nucleic Acids Res (2009) 0.82

Integration of global resources for human genetic variation and disease. Hum Mutat (2012) 0.79

Dense stereo matching over the Panum band. IEEE Trans Pattern Anal Mach Intell (2010) 0.79

The identification of thymic nurse cells in vivo and the role of cytoskeletal proteins in thymocyte internalization. Cell Immunol (2004) 0.78

Functional modelling of planar cell polarity: an approach for identifying molecular function. BMC Dev Biol (2013) 0.76

Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins. BMC Evol Biol (2011) 0.76

Low microsatellite frequencies in neuron and brain expressed microRNAs. Gene (2012) 0.75