Yeast linker histone Hho1p is required for efficient RNA polymerase I processivity and transcriptional silencing at the ribosomal DNA.

PubWeight™: 0.87‹?›

🔗 View Article (PMC 2575252)

Published in Proc Natl Acad Sci U S A on August 07, 2008

Authors

Anat Levy1, Miri Eyal, Gitit Hershkovits, Mali Salmon-Divon, Michael Klutstein, Don Jay Katcoff

Author Affiliations

1: The Mina and Everard Goodman Faculty of Life Sciences, Bar Ilan University, Ramat Gan 52900, Israel.

Articles cited by this

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell (1998) 62.20

Genome-wide location and function of DNA binding proteins. Science (2000) 31.25

Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat Genet (2001) 13.05

A module map showing conditional activity of expression modules in cancer. Nat Genet (2004) 8.57

Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation. Cell (2005) 6.17

An unusual form of transcriptional silencing in yeast ribosomal DNA. Genes Dev (1997) 6.00

Crystal structure of globular domain of histone H5 and its implications for nucleosome binding. Nature (1993) 4.81

Structure of the chromatosome, a chromatin particle containing 160 base pairs of DNA and all the histones. Biochemistry (1978) 4.20

In vivo site-directed mutagenesis using oligonucleotides. Nat Biotechnol (2001) 3.65

Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length. Chromosome Res (2006) 3.31

Genome-wide binding map of the histone deacetylase Rpd3 in yeast. Nat Genet (2002) 3.18

Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin. Proc Natl Acad Sci U S A (1998) 3.16

An RNA polymerase I enhancer in Saccharomyces cerevisiae. Mol Cell Biol (1986) 2.85

Chromatin structures and transcription of rDNA in yeast Saccharomyces cerevisiae. Nucleic Acids Res (1993) 2.74

The dynamics of histone H1 function in chromatin. Mol Cell (2005) 2.49

RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components. Genes Dev (2004) 2.48

The transcriptional activity of RNA polymerase I is a key determinant for the level of all ribosome components. Genes Dev (2006) 2.46

Comparative subunit structure of HeLa, yeast, and chicken erythrocyte chromatin. Proc Natl Acad Sci U S A (1977) 2.31

Suppression of homologous recombination by the Saccharomyces cerevisiae linker histone. Mol Cell (2003) 2.30

H1 linker histones are essential for mouse development and affect nucleosome spacing in vivo. Mol Cell Biol (2003) 2.29

Cell-cycle regulation of histone gene expression. Cell (1986) 2.09

Full and partial genome-wide assembly and disassembly of the yeast transcription machinery in response to heat shock. Genes Dev (2006) 2.04

Linker histones are not essential and affect chromatin condensation in vivo. Cell (1995) 1.99

Inhibition of homologous recombination by a cohesin-associated clamp complex recruited to the rDNA recombination enhancer. Genes Dev (2006) 1.98

Intrinsic protein disorder, amino acid composition, and histone terminal domains. J Biol Chem (2005) 1.98

Yeast chromatin structure. FEBS Lett (1976) 1.95

RPD3 is required for the inactivation of yeast ribosomal DNA genes in stationary phase. EMBO J (2002) 1.79

Transcription in the yeast rRNA gene locus: distribution of the active gene copies and chromatin structure of their flanking regulatory sequences. Mol Cell Biol (1995) 1.77

Linker histone-dependent DNA structure in linear mononucleosomes. J Mol Biol (1996) 1.76

Histone H1 in Saccharomyces cerevisiae: a double mystery solved? Trends Biochem Sci (1996) 1.67

The mobile nucleoporin Nup2p and chromatin-bound Prp20p function in endogenous NPC-mediated transcriptional control. J Cell Biol (2005) 1.59

Identification of two DNA-binding sites on the globular domain of histone H5. EMBO J (1996) 1.57

Deoxyribonuclease II as a probe for chromatin structure. I. Location of cleavage sites. J Mol Biol (1980) 1.49

Origin of H1 linker histones. FASEB J (2001) 1.46

Decreased expression of specific genes in yeast cells lacking histone H1. J Biol Chem (2001) 1.38

RNA polymerase I in yeast transcribes dynamic nucleosomal rDNA. Nat Struct Mol Biol (2007) 1.29

Specific distribution of the Saccharomyces cerevisiae linker histone homolog HHO1p in the chromatin. Nucleic Acids Res (2001) 1.28

Homo- and heteronuclear two-dimensional NMR studies of the globular domain of histone H1: full assignment, tertiary structure, and comparison with the globular domain of histone H5. Biochemistry (1994) 1.20

The polypeptide fold of the globular domain of histone H5 in solution. A study using nuclear magnetic resonance, distance geometry and restrained molecular dynamics. EMBO J (1987) 1.02

Is ribosome synthesis controlled by pol I transcription? Cell Cycle (2007) 0.98

Linker histone-dependent organization and dynamics of nucleosome entry/exit DNAs. J Mol Biol (2003) 0.97

Histone H1 expressed in Saccharomyces cerevisiae binds to chromatin and affects survival, growth, transcription, and plasmid stability but does not change nucleosomal spacing. Mol Cell Biol (1994) 0.94

Role of histone deacetylase Rpd3 in regulating rRNA gene transcription and nucleolar structure in yeast. Mol Cell Biol (2006) 0.92

Histones are required for transcription of yeast rRNA genes by RNA polymerase I. Proc Natl Acad Sci U S A (2005) 0.90

Low levels of exogenous histone H1 in yeast cause cell death. Proc Natl Acad Sci U S A (1994) 0.89

Histone Sequence Database: a compilation of highly-conserved nucleoprotein sequences. Nucleic Acids Res (1996) 0.89

Two homologous domains of similar structure but different stability in the yeast linker histone, Hho1p. J Mol Biol (2004) 0.86

Engineering the structural stability and functional properties of the GI domain into the intrinsically unfolded GII domain of the yeast linker histone Hho1p. J Mol Biol (2005) 0.81

The linker histone homolog Hho1p from Saccharomyces cerevisiae represents a winged helix-turn-helix fold as determined by NMR spectroscopy. Nucleic Acids Res (2003) 0.80

Distinct properties of the two putative "globular domains" of the yeast linker histone, Hho1p. J Mol Biol (2004) 0.79

The Saccharomyces cerevisiae linker histone Hho1p, with two globular domains, can simultaneously bind to two four-way junction DNA molecules. Biochemistry (2005) 0.77

Articles by these authors

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature (2012) 7.00

Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression. RNA (2010) 3.85

The shaping and functional consequences of the microRNA landscape in breast cancer. Nature (2013) 2.22

NuRD-mediated deacetylation of H3K27 facilitates recruitment of Polycomb Repressive Complex 2 to direct gene repression. EMBO J (2011) 2.09

Transcriptome-wide mapping of N(6)-methyladenosine by m(6)A-seq based on immunocapturing and massively parallel sequencing. Nat Protoc (2013) 1.91

Natural killer cell education in mice with single or multiple major histocompatibility complex class I molecules. J Exp Med (2005) 1.76

Four linked genes participate in controlling sporulation efficiency in budding yeast. PLoS Genet (2006) 1.69

Backup in gene regulatory networks explains differences between binding and knockout results. Mol Syst Biol (2009) 1.27

Multiple roles for polypyrimidine tract binding (PTB) proteins in trypanosome RNA metabolism. RNA (2009) 1.19

ALA induced photodynamic effects on gram positive and negative bacteria. Photochem Photobiol Sci (2004) 1.16

A unique megaplasmid contributes to stress tolerance and pathogenicity of an emergent Salmonella enterica serovar Infantis strain. Environ Microbiol (2014) 1.14

Molecular and structural characterization of the HMP-AB gene encoding a pore-forming protein from a clinical isolate of Acinetobacter baumannii. Curr Microbiol (2003) 1.05

Identification of novel snRNA-specific Sm proteins that bind selectively to U2 and U4 snRNAs in Trypanosoma brucei. RNA (2006) 1.03

Natural killer cell tolerance persists despite significant reduction of self MHC class I on normal target cells in mice. PLoS One (2010) 0.96

Identification of the heptameric Lsm complex that binds U6 snRNA in Trypanosoma brucei. Mol Biochem Parasitol (2008) 0.95

Probing natural killer cell education by Ly49 receptor expression analysis and computational modelling in single MHC class I mice. PLoS One (2009) 0.93

Functional domains of the yeast chromatin protein Sin1p/Spt2p can bind four-way junction and crossing DNA structures. J Biol Chem (2004) 0.93

Elucidating the role of C/D snoRNA in rRNA processing and modification in Trypanosoma brucei. Eukaryot Cell (2007) 0.91

Genome-wide characterization of Foxa2 targets reveals upregulation of floor plate genes and repression of ventrolateral genes in midbrain dopaminergic progenitors. Development (2012) 0.89

A combined expression-interaction model for inferring the temporal activity of transcription factors. J Comput Biol (2009) 0.86

Integron-mediated ESBL resistance in rare serotypes of Escherichia coli causing infections in an elderly population of Israel. J Antimicrob Chemother (2004) 0.85

Simulations of the NK cell immune synapse reveal that activation thresholds can be established by inhibitory receptors acting locally. J Immunol (2011) 0.83

Myb-domain protein Teb1 controls histone levels and centromere assembly in fission yeast. EMBO J (2013) 0.82

Cloning and characterization of the gene encoding for OMP-PD porin: the major Photobacterium damsela outer membrane protein. Curr Microbiol (2004) 0.79

Determination of molecular markers for BRCA1 and BRCA2 heterozygosity using gene expression profiling. Cancer Prev Res (Phila) (2013) 0.78

Homozygous MED25 mutation implicated in eye-intellectual disability syndrome. Hum Genet (2015) 0.76