Integrative analysis of HIF binding and transactivation reveals its role in maintaining histone methylation homeostasis.

PubWeight™: 2.95‹?› | Rank: Top 1%

🔗 View Article (PMC 2657396)

Published in Proc Natl Acad Sci U S A on March 02, 2009

Authors

Xiaobo Xia1, Madeleine E Lemieux, Wei Li, Jason S Carroll, Myles Brown, X Shirley Liu, Andrew L Kung

Author Affiliations

1: Department of Pediatric Oncology, Dana-Farber Cancer Institute, and Harvard Medical School, Boston, MA 02115, USA.

Articles citing this

(truncated to the top 100)

Hypoxia-inducible factors and the response to hypoxic stress. Mol Cell (2010) 7.20

A temporarily distinct subpopulation of slow-cycling melanoma cells is required for continuous tumor growth. Cell (2010) 6.47

HIF1α and HIF2α: sibling rivalry in hypoxic tumour growth and progression. Nat Rev Cancer (2011) 6.32

HIF-1: upstream and downstream of cancer metabolism. Curr Opin Genet Dev (2009) 5.24

The histone deacetylase Sirt6 regulates glucose homeostasis via Hif1alpha. Cell (2010) 5.11

Hypoxia-inducible factors: mediators of cancer progression and targets for cancer therapy. Trends Pharmacol Sci (2012) 4.96

HIF-1 mediates metabolic responses to intratumoral hypoxia and oncogenic mutations. J Clin Invest (2013) 3.55

High-resolution genome-wide mapping of HIF-binding sites by ChIP-seq. Blood (2011) 3.00

Regulation of TFEB and V-ATPases by mTORC1. EMBO J (2011) 2.84

Influence of metabolism on epigenetics and disease. Cell (2013) 2.64

Overcoming intrinsic multidrug resistance in melanoma by blocking the mitochondrial respiratory chain of slow-cycling JARID1B(high) cells. Cancer Cell (2013) 2.43

Hypoxia-inducible factor-1-dependent mechanisms of vascularization and vascular remodelling. Cardiovasc Res (2010) 2.30

Common genetic variants at the 11q13.3 renal cancer susceptibility locus influence binding of HIF to an enhancer of cyclin D1 expression. Nat Genet (2012) 2.25

Adaptive and maladaptive cardiorespiratory responses to continuous and intermittent hypoxia mediated by hypoxia-inducible factors 1 and 2. Physiol Rev (2012) 2.24

Hypoxia inducible factors in cancer stem cells. Br J Cancer (2010) 2.21

Regulation of the histone demethylase JMJD1A by hypoxia-inducible factor 1 alpha enhances hypoxic gene expression and tumor growth. Mol Cell Biol (2010) 2.17

The VHL/HIF axis in clear cell renal carcinoma. Semin Cancer Biol (2012) 1.90

Cancer and altered metabolism: potential importance of hypoxia-inducible factor and 2-oxoglutarate-dependent dioxygenases. Cold Spring Harb Symp Quant Biol (2011) 1.81

Generating specificity and diversity in the transcriptional response to hypoxia. Nat Rev Genet (2009) 1.76

The hypoxia-inducible transcription factor pathway regulates oxygen sensing in the simplest animal, Trichoplax adhaerens. EMBO Rep (2010) 1.62

Genome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site prediction. Nucleic Acids Res (2010) 1.60

State of the science: an update on renal cell carcinoma. Mol Cancer Res (2012) 1.58

Combinatorial regulation of neuroblastoma tumor progression by N-Myc and hypoxia inducible factor HIF-1alpha. Cancer Res (2010) 1.57

Hypoxia, Hypoxia-inducible Transcription Factors, and Renal Cancer. Eur Urol (2015) 1.56

Allosteric inhibition of hypoxia inducible factor-2 with small molecules. Nat Chem Biol (2013) 1.55

Hypoxia-inducible factor 1 and cardiovascular disease. Annu Rev Physiol (2013) 1.52

The suffocating kidney: tubulointerstitial hypoxia in end-stage renal disease. Nat Rev Nephrol (2010) 1.46

Metabolic shifts in immunity and inflammation. J Immunol (2010) 1.45

The histone demethylase JMJD2B is regulated by estrogen receptor alpha and hypoxia, and is a key mediator of estrogen induced growth. Cancer Res (2010) 1.40

Oxygen sensing and hypoxia signalling pathways in animals: the implications of physiology for cancer. J Physiol (2013) 1.35

Vascular responses to hypoxia and ischemia. Arterioscler Thromb Vasc Biol (2009) 1.34

New insights into the biology of renal cell carcinoma. Hematol Oncol Clin North Am (2011) 1.31

The von Hippel-Lindau tumor suppressor protein regulates gene expression and tumor growth through histone demethylase JARID1C. Oncogene (2011) 1.30

Preferential binding of HIF-1 to transcriptionally active loci determines cell-type specific response to hypoxia. Genome Biol (2009) 1.27

Dynamic change of chromatin conformation in response to hypoxia enhances the expression of GLUT3 (SLC2A3) by cooperative interaction of hypoxia-inducible factor 1 and KDM3A. Mol Cell Biol (2012) 1.26

Hypoxia induces trimethylated H3 lysine 4 by inhibition of JARID1A demethylase. Cancer Res (2010) 1.18

Jumonji domain-containing protein 6 (Jmjd6) is required for angiogenic sprouting and regulates splicing of VEGF-receptor 1. Proc Natl Acad Sci U S A (2011) 1.16

Hypoxia and nickel inhibit histone demethylase JMJD1A and repress Spry2 expression in human bronchial epithelial BEAS-2B cells. Carcinogenesis (2010) 1.14

Hypoxia-induced epigenetic regulation and silencing of the BRCA1 promoter. Mol Cell Biol (2011) 1.13

Human high-altitude adaptation: forward genetics meets the HIF pathway. Genes Dev (2014) 1.09

Human AlkB homologue 5 is a nuclear 2-oxoglutarate dependent oxygenase and a direct target of hypoxia-inducible factor 1α (HIF-1α). PLoS One (2011) 1.09

Role of hypoxia-inducible factors in breast cancer metastasis. Future Oncol (2013) 1.09

Regulation of type II transmembrane serine proteinase TMPRSS6 by hypoxia-inducible factors: new link between hypoxia signaling and iron homeostasis. J Biol Chem (2010) 1.08

The control of histone methylation and gene expression by oxidative stress, hypoxia, and metals. Free Radic Biol Med (2012) 1.08

The Critical Impact of HIF-1a on Gastric Cancer Biology. Cancers (Basel) (2013) 1.08

Chromatin as an oxygen sensor and active player in the hypoxia response. Cell Signal (2011) 1.05

Upstream stimulatory factor 2 and hypoxia-inducible factor 2α (HIF2α) cooperatively activate HIF2 target genes during hypoxia. Mol Cell Biol (2012) 1.04

Molecular responses to hypoxia-inducible factor 1α and beyond. Mol Pharmacol (2014) 1.03

From cancer stem cells to tumor maintenance in melanoma. J Invest Dermatol (2011) 1.01

Maintaining Mammalian iron and oxygen homeostasis: sensors, regulation, and cross-talk. Ann N Y Acad Sci (2009) 1.01

Differential hypoxic regulation of hypoxia-inducible factors 1alpha and 2alpha. Mol Cancer Res (2011) 0.99

Development of inhibitors of the PAS-B domain of the HIF-2α transcription factor. J Med Chem (2013) 0.99

Neurotrophin receptor TrkB promotes lung adenocarcinoma metastasis. Proc Natl Acad Sci U S A (2014) 0.98

Cross-species comparison of genomewide gene expression profiles reveals induction of hypoxia-inducible factor-responsive genes in iron-deprived intestinal epithelial cells. Am J Physiol Cell Physiol (2010) 0.95

Oxygen Sensing and Homeostasis. Physiology (Bethesda) (2015) 0.93

Epigenetics: new questions on the response to hypoxia. Int J Mol Sci (2011) 0.93

Genome-wide identification and annotation of HIF-1α binding sites in two cell lines using massively parallel sequencing. Hugo J (2011) 0.92

WISP-1 a novel angiogenic regulator of the CCN family promotes oral squamous cell carcinoma angiogenesis through VEGF-A expression. Oncotarget (2015) 0.92

The possible mechanisms underlying the impairment of HIF-1α pathway signaling in hyperglycemia and the beneficial effects of certain therapies. Int J Med Sci (2013) 0.90

Cancer cell metabolism and the modulating effects of nitric oxide. Free Radic Biol Med (2014) 0.90

Protein degradation and iron homeostasis. Biochim Biophys Acta (2012) 0.90

Activation of Hif1α by the prolylhydroxylase inhibitor dimethyoxalyglycine decreases radiosensitivity. PLoS One (2011) 0.90

AML1/ETO cooperates with HIF1α to promote leukemogenesis through DNMT3a transactivation. Leukemia (2015) 0.89

Tumor cell survival pathways activated by photodynamic therapy: a molecular basis for pharmacological inhibition strategies. Cancer Metastasis Rev (2015) 0.89

Silencing of the DNA mismatch repair gene MLH1 induced by hypoxic stress in a pathway dependent on the histone demethylase LSD1. Cell Rep (2014) 0.88

HIF-1-dependent induction of Jumonji domain-containing protein (JMJD) 3 under hypoxic conditions. Mol Cells (2014) 0.88

Hypoxia-inducible factors: mediators of cancer progression; prognostic and therapeutic targets in soft tissue sarcomas. Cancers (Basel) (2013) 0.87

Inflammation, HIF-1, and the epigenetics that follows. Mediators Inflamm (2010) 0.87

Hypoxia and DNA repair. Yale J Biol Med (2013) 0.86

Heterogeneous Effects of Direct Hypoxia Pathway Activation in Kidney Cancer. PLoS One (2015) 0.85

Defining the role of oxygen tension in human neural progenitor fate. Stem Cell Reports (2014) 0.85

Nuclear ARRB1 induces pseudohypoxia and cellular metabolism reprogramming in prostate cancer. EMBO J (2014) 0.85

Epigenetics, TET proteins, and hypoxia in epithelial-mesenchymal transition and tumorigenesis. Biomedicine (Taipei) (2016) 0.84

HIF-2α regulates NANOG expression in human embryonic stem cells following hypoxia and reoxygenation through the interaction with an Oct-Sox cis regulatory element. PLoS One (2014) 0.84

The hypoxia-inducible epigenetic regulators Jmjd1a and G9a provide a mechanistic link between angiogenesis and tumor growth. Mol Cell Biol (2014) 0.83

Cooperativity of stress-responsive transcription factors in core hypoxia-inducible factor binding regions. PLoS One (2012) 0.83

The cardiac hypoxic niche: emerging role of hypoxic microenvironment in cardiac progenitors. Cardiovasc Diagn Ther (2012) 0.83

Regulation of cell proliferation by hypoxia-inducible factors. Am J Physiol Cell Physiol (2015) 0.83

Hypoxia-inducible factor 1-regulated lysyl oxidase is involved in Staphylococcus aureus abscess formation. Infect Immun (2013) 0.83

Cell cycle progression in response to oxygen levels. Cell Mol Life Sci (2014) 0.82

Adaptive Chromatin Remodeling Drives Glioblastoma Stem Cell Plasticity and Drug Tolerance. Cell Stem Cell (2016) 0.82

A role for insulator elements in the regulation of gene expression response to hypoxia. Nucleic Acids Res (2011) 0.81

Amphiregulin enhances alpha6beta1 integrin expression and cell motility in human chondrosarcoma cells through Ras/Raf/MEK/ERK/AP-1 pathway. Oncotarget (2015) 0.81

The retinoblastoma protein regulates hypoxia-inducible genetic programs, tumor cell invasiveness and neuroendocrine differentiation in prostate cancer cells. Oncotarget (2016) 0.81

Hypoxia, Epithelial-Mesenchymal Transition, and TET-Mediated Epigenetic Changes. J Clin Med (2016) 0.81

The HIF/PHF8/AR axis promotes prostate cancer progression. Oncogenesis (2016) 0.80

Epigenetic silencing of Na,K-ATPase β 1 subunit gene ATP1B1 by methylation in clear cell renal cell carcinoma. Epigenetics (2014) 0.80

Megakaryocytic leukemia 1 (MKL1) ties the epigenetic machinery to hypoxia-induced transactivation of endothelin-1. Nucleic Acids Res (2013) 0.80

Hypoxia-Inducible Factor-1: A Critical Player in the Survival Strategy of Stressed Cells. J Cell Biochem (2016) 0.78

Choline phosphorylation and regulation of transcription of choline kinase α in hypoxia. J Lipid Res (2011) 0.78

Signaling hypoxia by hypoxia-inducible factor protein hydroxylases: a historical overview and future perspectives. Hypoxia (Auckl) (2014) 0.78

Hypoxia-Inducible Histone Lysine Demethylases: Impact on the Aging Process and Age-Related Diseases. Aging Dis (2016) 0.77

Oxidative stress under ambient and physiological oxygen tension in tissue culture. Curr Pharmacol Rep (2016) 0.77

Suppression of Akt-HIF-1α signaling axis by diacetyl atractylodiol inhibits hypoxia-induced angiogenesis. BMB Rep (2016) 0.77

Suffocating cancer: hypoxia-associated epimutations as targets for cancer therapy. Clin Epigenetics (2011) 0.77

Emerging evidence of the physiological role of hypoxia in mammary development and lactation. J Anim Sci Biotechnol (2014) 0.77

Hypoxic regulation of the noncoding genome and NEAT1. Brief Funct Genomics (2015) 0.77

HIF-KDM3A-MMP12 regulatory circuit ensures trophoblast plasticity and placental adaptations to hypoxia. Proc Natl Acad Sci U S A (2016) 0.76

Epigenetic Regulation of Carotid Body Oxygen Sensing: Clinical Implications. Adv Exp Med Biol (2015) 0.76

Hypoxia inducible factor-1 mediates the expression of the immune checkpoint HLA-G in glioma cells through hypoxia response element located in exon 2. Oncotarget (2016) 0.76

Articles cited by this

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A (2005) 167.46

Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol (1994) 37.96

Targeting HIF-1 for cancer therapy. Nat Rev Cancer (2003) 28.01

Targeting of HIF-alpha to the von Hippel-Lindau ubiquitylation complex by O2-regulated prolyl hydroxylation. Science (2001) 23.83

HIFalpha targeted for VHL-mediated destruction by proline hydroxylation: implications for O2 sensing. Science (2001) 22.06

A global map of p53 transcription-factor binding sites in the human genome. Cell (2006) 20.65

Genome-wide analysis of estrogen receptor binding sites. Nat Genet (2006) 18.63

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell (2007) 16.66

MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res (2006) 15.32

Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1. Cell (2005) 14.32

Model-based analysis of tiling-arrays for ChIP-chip. Proc Natl Acad Sci U S A (2006) 13.68

MATCH: A tool for searching transcription factor binding sites in DNA sequences. Nucleic Acids Res (2003) 11.82

A conserved family of prolyl-4-hydroxylases that modify HIF. Science (2001) 11.50

Regulation of hypoxia-inducible factor 1alpha is mediated by an O2-dependent degradation domain via the ubiquitin-proteasome pathway. Proc Natl Acad Sci U S A (1998) 9.56

Neuronal and glioma-derived stem cell factor induces angiogenesis within the brain. Cancer Cell (2006) 8.09

Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases. Cell (2006) 7.08

Genome-wide analysis of Foxp3 target genes in developing and mature regulatory T cells. Nature (2007) 7.04

Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome. Genome Res (2006) 6.54

JHDM2A, a JmjC-containing H3K9 demethylase, facilitates transcription activation by androgen receptor. Cell (2006) 5.54

Hypoxia-inducible factor 1 levels vary exponentially over a physiologically relevant range of O2 tension. Am J Physiol (1996) 5.52

Integration of oxygen signaling at the consensus HRE. Sci STKE (2005) 4.95

The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3. Nature (2006) 4.74

An essential role for p300/CBP in the cellular response to hypoxia. Proc Natl Acad Sci U S A (1996) 4.57

Regulation of the hypoxia-inducible transcription factor 1alpha by the ubiquitin-proteasome pathway. J Biol Chem (1999) 3.95

Cooperative demethylation by JMJD2C and LSD1 promotes androgen receptor-dependent gene expression. Nat Cell Biol (2007) 3.89

Distribution of NF-kappaB-binding sites across human chromosome 22. Proc Natl Acad Sci U S A (2003) 3.89

Molecular mechanisms of transcription activation by HLF and HIF1alpha in response to hypoxia: their stabilization and redox signal-induced interaction with CBP/p300. EMBO J (1999) 3.70

PLU-1 is an H3K4 demethylase involved in transcriptional repression and breast cancer cell proliferation. Mol Cell (2007) 3.68

Jmjd2b antagonizes H3K9 trimethylation at pericentric heterochromatin in mammalian cells. Genes Dev (2006) 3.24

Regulation of angiogenesis by hypoxia-inducible factor 1. Crit Rev Oncol Hematol (2006) 2.80

The N-terminal transactivation domain confers target gene specificity of hypoxia-inducible factors HIF-1alpha and HIF-2alpha. Mol Biol Cell (2007) 2.58

Roles of jumonji and jumonji family genes in chromatin regulation and development. Dev Dyn (2006) 2.08

Regulation of Jumonji-domain-containing histone demethylases by hypoxia-inducible factor (HIF)-1alpha. Biochem J (2008) 1.95

Hypoxic stress induces dimethylated histone H3 lysine 9 through histone methyltransferase G9a in mammalian cells. Cancer Res (2006) 1.78

Hypoxia induces a novel signature of chromatin modifications and global repression of transcription. Mutat Res (2008) 1.61

Hypoxia upregulates the histone demethylase JMJD1A via HIF-1. Biochem Biophys Res Commun (2008) 1.55

MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes. Nucleic Acids Res (2006) 1.37

Malignant glioma physiology: cellular response to hypoxia and its role in tumor progression. Ann Intern Med (2003) 1.17

Articles by these authors

Model-based analysis of ChIP-Seq (MACS). Genome Biol (2008) 51.63

A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science (2002) 42.78

Selective inhibition of BET bromodomains. Nature (2010) 18.79

Genome-wide analysis of estrogen receptor binding sites. Nat Genet (2006) 18.63

BET bromodomain inhibition as a therapeutic strategy to target c-Myc. Cell (2011) 14.34

Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1. Cell (2005) 14.32

FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell (2008) 14.18

Model-based analysis of tiling-arrays for ChIP-chip. Proc Natl Acad Sci U S A (2006) 13.68

Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing. Genes Dev (2005) 12.15

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science (2010) 9.78

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res (2012) 9.13

Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2. Nature (2010) 8.87

Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet (2010) 8.75

The role of microRNA genes in papillary thyroid carcinoma. Proc Natl Acad Sci U S A (2005) 8.60

Differential chromatin marking of introns and expressed exons by H3K36me3. Nat Genet (2009) 8.11

Characterization of AMN107, a selective inhibitor of native and mutant Bcr-Abl. Cancer Cell (2005) 7.99

Activation of apoptosis in vivo by a hydrocarbon-stapled BH3 helix. Science (2004) 7.63

Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells. Nature (2011) 7.43

Model-based analysis of two-color arrays (MA2C). Genome Biol (2007) 7.28

X chromosomal abnormalities in basal-like human breast cancer. Cancer Cell (2006) 7.17

Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer. Cell (2009) 7.09

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nat Biotechnol (2010) 7.00

PlasmoDB: a functional genomic database for malaria parasites. Nucleic Acids Res (2008) 6.73

iPS cells produce viable mice through tetraploid complementation. Nature (2009) 6.51

Molecular determinants for the tissue specificity of SERMs. Science (2002) 6.20

Origin and diversity of novel avian influenza A H7N9 viruses causing human infection: phylogenetic, structural, and coalescent analyses. Lancet (2013) 6.10

Pioneer transcription factors: establishing competence for gene expression. Genes Dev (2011) 6.01

A hierarchical network of transcription factors governs androgen receptor-dependent prostate cancer growth. Mol Cell (2007) 5.99

Nucleosome dynamics define transcriptional enhancers. Nat Genet (2010) 5.94

A circadian rhythm orchestrated by histone deacetylase 3 controls hepatic lipid metabolism. Science (2011) 5.91

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer. Nature (2012) 5.84

BSMAP: whole genome bisulfite sequence MAPping program. BMC Bioinformatics (2009) 5.67

Chromatin structure analyses identify miRNA promoters. Genes Dev (2008) 5.40

Spatial and temporal recruitment of androgen receptor and its coactivators involves chromosomal looping and polymerase tracking. Mol Cell (2005) 5.38

High-throughput mapping of the chromatin structure of human promoters. Nat Biotechnol (2007) 5.24

H3K79 methylation profiles define murine and human MLL-AF4 leukemias. Cancer Cell (2008) 5.23

FOXA1 is a key determinant of estrogen receptor function and endocrine response. Nat Genet (2010) 5.22

Evidence that ternary complex (eIF2-GTP-tRNA(i)(Met))-deficient preinitiation complexes are core constituents of mammalian stress granules. Mol Biol Cell (2002) 5.20

Bone marrow edema and its relation to progression of knee osteoarthritis. Ann Intern Med (2003) 4.98

Formation of the androgen receptor transcription complex. Mol Cell (2002) 4.93

Selective killing of mixed lineage leukemia cells by a potent small-molecule DOT1L inhibitor. Cancer Cell (2011) 4.90

Cardiovascular risk and events in 17 low-, middle-, and high-income countries. N Engl J Med (2014) 4.88

Association of urinary sodium and potassium excretion with blood pressure. N Engl J Med (2014) 4.86

Dnmt3a is essential for hematopoietic stem cell differentiation. Nat Genet (2011) 4.85

PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale. Genes Dev (2008) 4.83

Direct inhibition of the NOTCH transcription factor complex. Nature (2009) 4.82

Integrating regulatory motif discovery and genome-wide expression analysis. Proc Natl Acad Sci U S A (2003) 4.74

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Nat Struct Mol Biol (2009) 4.64

A G protein-coupled receptor is a plasma membrane receptor for the plant hormone abscisic acid. Science (2007) 4.61

MLL-rearranged leukemia is dependent on aberrant H3K79 methylation by DOT1L. Cancer Cell (2011) 4.56

The JAK2/STAT3 signaling pathway is required for growth of CD44⁺CD24⁻ stem cell-like breast cancer cells in human tumors. J Clin Invest (2011) 4.41

RSeQC: quality control of RNA-seq experiments. Bioinformatics (2012) 4.31

CEAS: cis-regulatory element annotation system. Bioinformatics (2009) 4.26

Productivity is a poor predictor of plant species richness. Science (2011) 4.21

A novel influenza A (H1N1) vaccine in various age groups. N Engl J Med (2009) 4.20

Cistrome: an integrative platform for transcriptional regulation studies. Genome Biol (2011) 4.13

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets. Genome Res (2008) 4.08

Tumor cell-specific bioluminescence platform to identify stroma-induced changes to anticancer drug activity. Nat Med (2010) 4.00

A broadly implementable research course in phage discovery and genomics for first-year undergraduate students. MBio (2014) 3.93

A CTCF-independent role for cohesin in tissue-specific transcription. Genome Res (2010) 3.89

TriTrypDB: a functional genomic resource for the Trypanosomatidae. Nucleic Acids Res (2009) 3.79

Inhibition of FLT3 in MLL. Validation of a therapeutic target identified by gene expression based classification. Cancer Cell (2003) 3.75

EZH2 oncogenic activity in castration-resistant prostate cancer cells is Polycomb-independent. Science (2012) 3.74

Receptor-like cytoplasmic kinases integrate signaling from multiple plant immune receptors and are targeted by a Pseudomonas syringae effector. Cell Host Microbe (2010) 3.73

A small-molecule antagonist of CXCR4 inhibits intracranial growth of primary brain tumors. Proc Natl Acad Sci U S A (2003) 3.72

SCF(FBW7) regulates cellular apoptosis by targeting MCL1 for ubiquitylation and destruction. Nature (2011) 3.69

Chromatin marks identify critical cell types for fine mapping complex trait variants. Nat Genet (2012) 3.67

Simultaneous generation and germline transmission of multiple gene mutations in rat using CRISPR-Cas systems. Nat Biotechnol (2013) 3.65

Oncogenic BRAF regulates oxidative metabolism via PGC1α and MITF. Cancer Cell (2013) 3.63

Estrogen-dependent signaling in a molecularly distinct subclass of aggressive prostate cancer. J Natl Cancer Inst (2008) 3.55

Small-molecule inhibition of BRDT for male contraception. Cell (2012) 3.50

Meta-analysis of traditional Chinese patent medicine for ischemic stroke. Stroke (2007) 3.46