Published in RNA on April 16, 2009
SFmap: a web server for motif analysis and prediction of splicing factor binding sites. Nucleic Acids Res (2010) 1.33
The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization. BMC Plant Biol (2010) 1.05
Regulation of synaptic Pumilio function by an aggregation-prone domain. J Neurosci (2010) 1.02
Lessons for inductive germline determination. Mol Reprod Dev (2013) 0.90
Carbon source-dependent alteration of Puf3p activity mediates rapid changes in the stabilities of mRNAs involved in mitochondrial function. Nucleic Acids Res (2013) 0.88
A Nucleolar PUF RNA-binding Protein with Specificity for a Unique RNA Sequence. J Biol Chem (2015) 0.78
Distinct modes of recruitment of the CCR4-NOT complex by Drosophila and vertebrate Nanos. EMBO J (2016) 0.78
Bioinformatic identification of novel elements potentially involved in messenger RNA fate control during spermatogenesis. Biol Reprod (2012) 0.77
Seizure control through genetic and pharmacological manipulation of Pumilio: a key component of neuronal homeostasis. Dis Model Mech (2016) 0.75
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling. Biophys J (2000) 21.93
Calculation of hydrodynamic properties of globular proteins from their atomic-level structure. Biophys J (2000) 7.40
Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol (2004) 6.38
A PUF family portrait: 3'UTR regulation as a way of life. Trends Genet (2002) 5.71
A novel group of pumilio mutations affects the asymmetric division of germline stem cells in the Drosophila ovary. Development (1997) 5.25
Size-distribution analysis of proteins by analytical ultracentrifugation: strategies and application to model systems. Biophys J (2002) 5.20
The staufen/pumilio pathway is involved in Drosophila long-term memory. Curr Biol (2003) 4.82
Modular recognition of RNA by a human pumilio-homology domain. Cell (2002) 4.17
Sedimentation equilibrium analysis of protein interactions with global implicit mass conservation constraints and systematic noise decomposition. Anal Biochem (2004) 3.71
RNA regulatory elements mediate control of Drosophila body pattern by the posterior morphogen nanos. Cell (1991) 3.39
The Puf3 protein is a transcript-specific regulator of mRNA degradation in yeast. EMBO J (2000) 3.38
Recruitment of Nanos to hunchback mRNA by Pumilio. Genes Dev (1999) 3.05
The Pumilio protein binds RNA through a conserved domain that defines a new class of RNA-binding proteins. RNA (1997) 2.98
Binding of pumilio to maternal hunchback mRNA is required for posterior patterning in Drosophila embryos. Cell (1995) 2.97
Drosophila Brain Tumor is a translational repressor. Genes Dev (2001) 2.90
The Pumilio RNA-binding domain is also a translational regulator. Mol Cell (1998) 2.68
Human DNA polymerase kappa encircles DNA: implications for mismatch extension and lesion bypass. Mol Cell (2007) 2.46
Maternal Pumilio acts together with Nanos in germline development in Drosophila embryos. Nat Cell Biol (1999) 2.35
Structure of Pumilio reveals similarity between RNA and peptide binding motifs. Cell (2001) 2.34
Crystal structure of a Pumilio homology domain. Mol Cell (2001) 2.32
Translational control of maternal Cyclin B mRNA by Nanos in the Drosophila germline. Development (2007) 2.16
Nanos and Pumilio are essential for dendrite morphogenesis in Drosophila peripheral neurons. Curr Biol (2004) 2.05
The translational repressor Pumilio regulates presynaptic morphology and controls postsynaptic accumulation of translation factor eIF-4E. Neuron (2004) 1.79
A single spacer nucleotide determines the specificities of two mRNA regulatory proteins. Nat Struct Mol Biol (2005) 1.67
The PUMILIO-RNA interaction: a single RNA-binding domain monomer recognizes a bipartite target sequence. Biochemistry (1999) 1.63
Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p. Nat Struct Mol Biol (2008) 1.62
mRNA regulation by Puf domain proteins. Sci STKE (2006) 1.31
Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity. Structure (2008) 1.24
Eya protein phosphatase activity regulates Six1-Dach-Eya transcriptional effects in mammalian organogenesis. Nature (2003) 3.72
Replication by human DNA polymerase-iota occurs by Hoogsteen base-pairing. Nature (2004) 3.57
Functional specificity of a Hox protein mediated by the recognition of minor groove structure. Cell (2007) 3.34
Transcription corepressor CtBP is an NAD(+)-regulated dehydrogenase. Mol Cell (2002) 3.28
PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression. Nature (2010) 2.91
Brat is a Miranda cargo protein that promotes neuronal differentiation and inhibits neuroblast self-renewal. Dev Cell (2006) 2.51
Human DNA polymerase kappa encircles DNA: implications for mismatch extension and lesion bypass. Mol Cell (2007) 2.46
Structural basis of high-fidelity DNA synthesis by yeast DNA polymerase delta. Nat Struct Mol Biol (2009) 2.44
Rev1 employs a novel mechanism of DNA synthesis using a protein template. Science (2005) 2.37
A genomic regulatory element that directs assembly and function of immune-specific AP-1-IRF complexes. Science (2012) 2.30
Translational control of maternal Cyclin B mRNA by Nanos in the Drosophila germline. Development (2007) 2.16
Human DNA polymerase iota incorporates dCTP opposite template G via a G.C + Hoogsteen base pair. Structure (2005) 1.80
The translational repressor Pumilio regulates presynaptic morphology and controls postsynaptic accumulation of translation factor eIF-4E. Neuron (2004) 1.79
ATP-driven remodeling of the linker domain in the dynein motor. Structure (2012) 1.74
Structural basis for the suppression of skin cancers by DNA polymerase eta. Nature (2010) 1.73
Protein-template-directed synthesis across an acrolein-derived DNA adduct by yeast Rev1 DNA polymerase. Structure (2008) 1.72
Crystal structure of PU.1/IRF-4/DNA ternary complex. Mol Cell (2002) 1.64
BstYI bound to noncognate DNA reveals a "hemispecific" complex: implications for DNA scanning. Structure (2007) 1.63
Ribosome clearance by FusB-type proteins mediates resistance to the antibiotic fusidic acid. Proc Natl Acad Sci U S A (2012) 1.62
Hoogsteen base pair formation promotes synthesis opposite the 1,N6-ethenodeoxyadenosine lesion by human DNA polymerase iota. Nat Struct Mol Biol (2006) 1.58
Crystal structure of the SF3 helicase from adeno-associated virus type 2. Structure (2003) 1.56
E(nos)/CG4699 required for nanos function in the female germ line of Drosophila. Genesis (2010) 1.47
Model of the brain tumor-Pumilio translation repressor complex. Genes Dev (2003) 1.46
Crystal structure of the catalytic core of human DNA polymerase kappa. Structure (2004) 1.35
Negative role of RIG-I serine 8 phosphorylation in the regulation of interferon-beta production. J Biol Chem (2010) 1.35
mRNA regulation by Puf domain proteins. Sci STKE (2006) 1.31
An incoming nucleotide imposes an anti to syn conformational change on the templating purine in the human DNA polymerase-iota active site. Structure (2006) 1.31
A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA. EMBO J (2005) 1.30
Structure, function, and evolution of the Crimean-Congo hemorrhagic fever virus nucleocapsid protein. J Virol (2012) 1.26
Oligobenzamide proteomimetic inhibitors of the p53-hDM2 protein-protein interaction. Chem Commun (Camb) (2009) 1.24
Dpo4 is hindered in extending a G.T mismatch by a reverse wobble. Nat Struct Mol Biol (2004) 1.24
Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity. Structure (2008) 1.24
RNA recognition via the SAM domain of Smaug. Mol Cell (2003) 1.22
Proximity-induced activation of human Cdc34 through heterologous dimerization. Proc Natl Acad Sci U S A (2005) 1.19
Ghettoizing outdoor advertising: disadvantage and ad panel density in black neighborhoods. J Urban Health (2007) 1.18
Structure of IRF-3 bound to the PRDIII-I regulatory element of the human interferon-beta enhancer. Mol Cell (2007) 1.18
Structure of the human Rev1-DNA-dNTP ternary complex. J Mol Biol (2009) 1.12
Topology of Type II REases revisited; structural classes and the common conserved core. Nucleic Acids Res (2007) 1.11
Structure of human DNA polymerase kappa inserting dATP opposite an 8-OxoG DNA lesion. PLoS One (2009) 1.09
Nucleocapsid protein structures from orthobunyaviruses reveal insight into ribonucleoprotein architecture and RNA polymerization. Nucleic Acids Res (2013) 1.09
Structure of adeno-associated virus type 2 Rep40-ADP complex: insight into nucleotide recognition and catalysis by superfamily 3 helicases. Proc Natl Acad Sci U S A (2004) 1.08
N-alkylated oligoamide alpha-helical proteomimetics. Org Biomol Chem (2010) 1.06
DNA structure modulates the oligomerization properties of the AAV initiator protein Rep68. PLoS Pathog (2009) 1.05
Structure of NF-kappaB p50/p65 heterodimer bound to the PRDII DNA element from the interferon-beta promoter. Structure (2002) 1.04
DNA synthesis across an abasic lesion by human DNA polymerase iota. Structure (2009) 1.04
Residues within the B' motif are critical for DNA binding by the superfamily 3 helicase Rep40 of adeno-associated virus type 2. J Biol Chem (2004) 1.03
Structural basis for cisplatin DNA damage tolerance by human polymerase η during cancer chemotherapy. Nat Struct Mol Biol (2012) 1.02
Structural insights into yeast DNA polymerase delta by small angle X-ray scattering. J Mol Biol (2009) 1.02
Implications for switching restriction enzyme specificities from the structure of BstYI bound to a BglII DNA sequence. Structure (2005) 0.96
Crystal structure of the essential transcription antiterminator M2-1 protein of human respiratory syncytial virus and implications of its phosphorylation. Proc Natl Acad Sci U S A (2014) 0.96
Artemis C-terminal region facilitates V(D)J recombination through its interactions with DNA Ligase IV and DNA-PKcs. J Exp Med (2012) 0.95
Kinked β-strands mediate high-affinity recognition of mRNA targets by the germ-cell regulator DAZL. Proc Natl Acad Sci U S A (2011) 0.95
Degradation of origin recognition complex large subunit by the anaphase-promoting complex in Drosophila. EMBO J (2003) 0.95
Energetic and structural considerations for the mechanism of protein sliding along DNA in the nonspecific BamHI-DNA complex. Biophys J (2003) 0.95
Replication across template T/U by human DNA polymerase-iota. Structure (2009) 0.94
Crystal structure of BstYI at 1.85A resolution: a thermophilic restriction endonuclease with overlapping specificities to BamHI and BglII. J Mol Biol (2004) 0.93
Selective and potent proteomimetic inhibitors of intracellular protein-protein interactions. Angew Chem Int Ed Engl (2015) 0.92
Structural basis for error-free replication of oxidatively damaged DNA by yeast DNA polymerase η. Structure (2010) 0.92
The ins and outs of bcr-abl inhibition. Genes Cancer (2012) 0.91
A beta-sheet interaction interface directs the tetramerisation of the Miz-1 POZ domain. J Mol Biol (2007) 0.91
The molecular chaperone Hsp90 is required for mRNA localization in Drosophila melanogaster embryos. Genetics (2007) 0.91
Human DNA polymerase η is pre-aligned for dNTP binding and catalysis. J Mol Biol (2011) 0.91
The interdomain linker of AAV-2 Rep68 is an integral part of its oligomerization domain: role of a conserved SF3 helicase residue in oligomerization. PLoS Pathog (2012) 0.90
Structure and dynamics of the second CARD of human RIG-I provide mechanistic insights into regulation of RIG-I activation. Structure (2012) 0.90
Solution structure of the Vts1 SAM domain in the presence of RNA. J Mol Biol (2005) 0.90
Small-molecule proteomimetic inhibitors of the HIF-1α-p300 protein-protein interaction. Chembiochem (2014) 0.89
The architecture of yeast DNA polymerase ζ. Cell Rep (2013) 0.87
Structure and RNA binding of the mouse Pumilio-2 Puf domain. J Struct Biol (2009) 0.86
Structural basis of DNA ligase IV-Artemis interaction in nonhomologous end-joining. Cell Rep (2012) 0.86
Crystallization and characterization of PU.1/IRF-4/DNA ternary complex. J Struct Biol (2002) 0.86
2-O-alkylated para-benzamide α-helix mimetics: the role of scaffold curvature. Org Biomol Chem (2012) 0.86
DNA synthesis across an abasic lesion by yeast REV1 DNA polymerase. J Mol Biol (2010) 0.85
Microwave assisted solid phase synthesis of highly functionalized N-alkylated oligobenzamide α-helix mimetics. Bioorg Med Chem (2012) 0.85
Deoxynucleotide triphosphate binding mode conserved in Y family DNA polymerases. Mol Cell Biol (2003) 0.85
Structural insights into the assembly and shape of Type III restriction-modification (R-M) EcoP15I complex by small-angle X-ray scattering. J Mol Biol (2012) 0.84
Oligomeric properties of adeno-associated virus Rep68 reflect its multifunctionality. J Virol (2012) 0.83
Modeling of arylamide helix mimetics in the p53 peptide binding site of hDM2 suggests parallel and anti-parallel conformations are both stable. PLoS One (2012) 0.83
Translational repressors in Drosophila. Trends Genet (2002) 0.83
Crystallization and preliminary crystallographic analysis of the type IIL restriction enzyme MmeI in complex with DNA. Acta Crystallogr Sect F Struct Biol Cryst Commun (2011) 0.82