Published in Mol Cell Proteomics on February 23, 2010
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Identification of genetic variants contributing to cisplatin-induced cytotoxicity by use of a genomewide approach. Am J Hum Genet (2007) 3.05
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Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution muLC-MS data. Anal Chem (2008) 2.77
Integrating QTL and high-density SNP analyses in mice to identify Insig2 as a susceptibility gene for plasma cholesterol levels. Genomics (2005) 2.61
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Exploiting naturally occurring DNA variation and molecular profiling data to dissect disease and drug response traits. Curr Opin Biotechnol (2005) 1.41
Identifying differences in protein expression levels by spectral counting and feature selection. Genet Mol Res (2008) 1.39
Susceptibility loci involved in cisplatin-induced cytotoxicity and apoptosis. Pharmacogenet Genomics (2008) 1.26
Protein quantification across hundreds of experimental conditions. Proc Natl Acad Sci U S A (2009) 1.10
Ultrafine mapping of SNPs from mouse strains C57BL/6J, DBA/2J, and C57BLKS/J for loci contributing to diabetes and atherosclerosis susceptibility. Diabetes (2005) 1.01
Optimizing the difference gel electrophoresis (DIGE) technology. Methods Mol Biol (2008) 0.90
Integrating genetic and gene expression data to study the metabolic syndrome and diabetes in mice. Am J Ther (2005) 0.87
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Microarray data analysis: from disarray to consolidation and consensus. Nat Rev Genet (2006) 16.12
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Repeatability of published microarray gene expression analyses. Nat Genet (2008) 8.24
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol (2010) 7.08
The genome sequence of the rice blast fungus Magnaporthe grisea. Nature (2005) 6.95
Untreated gonococcal and chlamydial infection in a probability sample of adults. JAMA (2002) 5.07
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Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets. Proc Natl Acad Sci U S A (2005) 4.45
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Inhaled NO accelerates restoration of liver function in adults following orthotopic liver transplantation. J Clin Invest (2007) 3.22
Familial and genetic susceptibility to major neonatal morbidities in preterm twins. Pediatrics (2006) 2.86
Transcriptional coordination of the metabolic network in Arabidopsis. Plant Physiol (2006) 2.36
Identification of a gene expression signature associated with recurrent disease in squamous cell carcinoma of the head and neck. Cancer Res (2004) 2.35
DCDC2 is associated with reading disability and modulates neuronal development in the brain. Proc Natl Acad Sci U S A (2005) 2.35
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MEK inhibition exhibits efficacy in human and mouse neurofibromatosis tumors. J Clin Invest (2012) 1.83
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FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar. Proc Natl Acad Sci U S A (2011) 1.78
Efficient RNA 2'-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C'/D' RNPs. EMBO J (2003) 1.72
Results of a genomewide linkage scan: support for chromosomes 9 and 11 loci increasing risk for cigarette smoking. Am J Med Genet B Neuropsychiatr Genet (2004) 1.67
Adipose tissue energy metabolism: altered gene expression profile of mice subjected to long-term caloric restriction. FASEB J (2003) 1.66
Processing complex mixtures of intact proteins for direct analysis by mass spectrometry. Anal Chem (2002) 1.63
CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol (2008) 1.60
Breast fibroblasts modulate epithelial cell proliferation in three-dimensional in vitro co-culture. Breast Cancer Res (2004) 1.58
Urinary peptidome may predict renal function decline in type 1 diabetes and microalbuminuria. J Am Soc Nephrol (2009) 1.57
Novel G-protein-coupled receptor-like proteins in the plant pathogenic fungus Magnaporthe grisea. Genome Biol (2005) 1.56
Karyotype versus microarray testing for genetic abnormalities after stillbirth. N Engl J Med (2012) 1.56
Patent ductus venosus and dioxin resistance in mice harboring a hypomorphic Arnt allele. J Biol Chem (2004) 1.56
Hedgehog signaling and response to cyclopamine differ in epithelial and stromal cells in benign breast and breast cancer. Cancer Biol Ther (2006) 1.55
The alpha- and beta-subunits of the human UDP-N-acetylglucosamine:lysosomal enzyme N-acetylglucosamine-1-phosphotransferase [corrected] are encoded by a single cDNA. J Biol Chem (2005) 1.55
Systematic comparison of the human saliva and plasma proteomes. Proteomics Clin Appl (2009) 1.51
Gene expression profiling of aging in multiple mouse strains: identification of aging biomarkers and impact of dietary antioxidants. Aging Cell (2009) 1.44
The effect of insulin on expression of genes and biochemical pathways in human skeletal muscle. Endocrine (2007) 1.44
Massively parallel resequencing of the isogenic Drosophila melanogaster strain w(1118); iso-2; iso-3 identifies hotspots for mutations in sensory perception genes. Fly (Austin) (2009) 1.41
Combined depletion of cell cycle and transcriptional cyclin-dependent kinase activities induces apoptosis in cancer cells. Cancer Res (2006) 1.40
Empirical Bayes estimation of gene-specific effects in micro-array research. Funct Integr Genomics (2004) 1.39
Transcriptome analysis reveals new insight into appressorium formation and function in the rice blast fungus Magnaporthe oryzae. Genome Biol (2008) 1.37
Energy restriction lowers the expression of genes linked to inflammation, the cytoskeleton, the extracellular matrix, and angiogenesis in mouse adipose tissue. J Nutr (2006) 1.36
Automated proteomics of E. coli via top-down electron-transfer dissociation mass spectrometry. Anal Chem (2008) 1.35
Discovery and characterization of a small molecule inhibitor of the PDZ domain of dishevelled. J Biol Chem (2009) 1.34
Novel tumor necrosis factor alpha-regulated genes in rheumatoid arthritis. Arthritis Rheum (2004) 1.33
Late-onset sepsis in very low birth weight infants from singleton and multiple-gestation births. J Pediatr (2013) 1.29
Gene discovery and gene expression in the rice blast fungus, Magnaporthe grisea: analysis of expressed sequence tags. Mol Plant Microbe Interact (2004) 1.28
A comparison of immobilized pH gradient isoelectric focusing and strong-cation-exchange chromatography as a first dimension in shotgun proteomics. Proteomics (2005) 1.28
Gestational exposure of Ahr and Arnt hypomorphs to dioxin rescues vascular development. Proc Natl Acad Sci U S A (2004) 1.27
S-adenosylmethionine prevents chronic alcohol-induced mitochondrial dysfunction in the rat liver. Am J Physiol Gastrointest Liver Physiol (2006) 1.25
Mitochondrial DNA (mtDNA) haplotypes reveal maternal population genetic affinities of Sea Island Gullah-speaking African Americans. Am J Phys Anthropol (2005) 1.23
T-ACASI reduces bias in STD measurements: the National STD and Behavior Measurement Experiment. Sex Transm Dis (2008) 1.19
Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle. Mol Cell (2010) 1.18
Fourier-transform mass spectrometry for automated fragmentation and identification of 5-20 kDa proteins in mixtures. Electrophoresis (2002) 1.18
FRED (a Framework for Reconstructing Epidemic Dynamics): an open-source software system for modeling infectious diseases and control strategies using census-based populations. BMC Public Health (2013) 1.18
Reproducible clusters from microarray research: whither? BMC Bioinformatics (2005) 1.14
Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis. BMC Med Genomics (2009) 1.13
Assessment of genotype imputation performance using 1000 Genomes in African American studies. PLoS One (2012) 1.10
HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data. BMC Bioinformatics (2005) 1.10
The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae. Genome Biol (2006) 1.09
Two-stage genome-wide association study identifies integrin beta 5 as having potential role in bull fertility. BMC Genomics (2009) 1.06
Improvement in fusion and stereopsis following surgery for intermittent exotropia. J Pediatr Ophthalmol Strabismus (2015) 1.06
TDT-association analysis of EKN1 and dyslexia in a Colorado twin cohort. Hum Genet (2005) 1.06
An improvement of the site-directed mutagenesis method by combination of megaprimer, one-side PCR and DpnI treatment. Anal Biochem (2004) 1.05
The NIDDK Central Repository at 8 years--ambition, revision, use and impact. Database (Oxford) (2011) 1.04
A dyslexia-associated variant in DCDC2 changes gene expression. Behav Genet (2010) 1.04
Down-regulation of miRNA-30a alleviates cerebral ischemic injury through enhancing beclin 1-mediated autophagy. Neurochem Res (2014) 1.03
Evaluating statistical methods using plasmode data sets in the age of massive public databases: an illustration using false discovery rates. PLoS Genet (2008) 1.03
Minimizing back exchange in 18O/16O quantitative proteomics experiments by incorporation of immobilized trypsin into the initial digestion step. Anal Chem (2007) 1.01
Genetical toxicogenomics in Drosophila identifies master-modulatory loci that are regulated by developmental exposure to lead. Neurotoxicology (2009) 1.01
Isolation and genetic characterization of H3N8 equine influenza virus from donkeys in China. Vet Microbiol (2010) 1.01
Using the PhenX Toolkit to Add Standard Measures to a Study. Curr Protoc Hum Genet (2011) 1.01
Impact of neurofibromatosis 1 on Quality of Life: a cross-sectional study of 176 American cases. Am J Med Genet A (2006) 1.00
Signature amino acids enable the archaeal L7Ae box C/D RNP core protein to recognize and bind the K-loop RNA motif. RNA (2009) 1.00
Nitric oxide synthase 2 promoter polymorphisms and systemic lupus erythematosus in african-americans. J Rheumatol (2003) 0.99
Identification of molecular distinctions between normal breast-associated fibroblasts and breast cancer-associated fibroblasts. Cancer Microenviron (2009) 0.99
Detection and validation of non-synonymous coding SNPs from orthogonal analysis of shotgun proteomics data. J Proteome Res (2007) 0.98
Single nucleotide polymorphisms affect both cis- and trans-eQTLs. Genomics (2009) 0.98
Self-assembled liquid crystalline nanoparticles as a novel ophthalmic delivery system for dexamethasone: Improving preocular retention and ocular bioavailability. Int J Pharm (2010) 0.98
Transcriptional reprogramming of gene expression in bovine somatic cell chromatin transfer embryos. BMC Genomics (2009) 0.98
Whole genome searching with shotgun proteomic data: applications for genome annotation. J Proteome Res (2007) 0.97
School closure as an influenza mitigation strategy: how variations in legal authority and plan criteria can alter the impact. BMC Public Health (2012) 0.96
Aniline as a dispersing and stabilizing agent for reduced graphene oxide and its subsequent decoration with Ag nanoparticles for enzymeless hydrogen peroxide detection. J Colloid Interface Sci (2011) 0.96
Conformational fluctuations coupled to the thiol-disulfide transfer between thioredoxin and arsenate reductase in Bacillus subtilis. J Biol Chem (2007) 0.95
Assembly of the archaeal box C/D sRNP can occur via alternative pathways and requires temperature-facilitated sRNA remodeling. J Mol Biol (2006) 0.94
Genome scan for loci predisposing to anxiety disorders using a novel multivariate approach: strong evidence for a chromosome 4 risk locus. Am J Hum Genet (2006) 0.94
Plasma microRNA profile as a predictor of early virological response to interferon treatment in chronic hepatitis B patients. Antivir Ther (2012) 0.93
Overexpression of CONSTANS homologs CO1 and CO2 fails to alter normal reproductive onset and fall bud set in woody perennial poplar. PLoS One (2012) 0.92
The biological effects and mechanisms of calcitonin gene-related peptide on human endothelial cell. J Recept Signal Transduct Res (2013) 0.92
Variants in the DYX2 locus are associated with altered brain activation in reading-related brain regions in subjects with reading disability. Neuroimage (2012) 0.91
Genome-wide linkage scan for loci predisposing to social phobia: evidence for a chromosome 16 risk locus. Am J Psychiatry (2004) 0.91
Surfactant dysfunction in SP-A-/- and iNOS-/- mice with mycoplasma infection. Am J Respir Cell Mol Biol (2006) 0.90
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Chemical and genetic evidence for the involvement of Wnt antagonist Dickkopf2 in regulation of glucose metabolism. Proc Natl Acad Sci U S A (2012) 0.89
Novel microemulsion in situ electrolyte-triggered gelling system for ophthalmic delivery of lipophilic cyclosporine A: in vitro and in vivo results. Int J Pharm (2008) 0.89
Human breast fibroblasts inhibit growth of the MCF10AT xenograft model of proliferative breast disease. Am J Pathol (2007) 0.88
The effects of intra-hippocampal microinfusion of D-cycloserine on fear extinction, and the expression of NMDA receptor subunit NR2B and neurogenesis in the hippocampus in rats. Prog Neuropsychopharmacol Biol Psychiatry (2013) 0.88
A proposed metric for assessing the measurement quality of individual microarrays. BMC Bioinformatics (2006) 0.87
TPCA-1 is a direct dual inhibitor of STAT3 and NF-κB and regresses mutant EGFR-associated human non-small cell lung cancers. Mol Cancer Ther (2014) 0.87
rHsp90 gene expression in response to several environmental stresses in rice (Oryza sativa L.). Plant Physiol Biochem (2006) 0.87