Modulation of UvrD helicase activity by covalent DNA-protein cross-links.

PubWeight™: 0.86‹?›

🔗 View Article (PMC 2898412)

Published in J Biol Chem on May 04, 2010

Authors

Anuradha Kumari1, Irina G Minko, Rebecca L Smith, R Stephen Lloyd, Amanda K McCullough

Author Affiliations

1: Department of Molecular and Medical Genetics, Oregon Health & Science University, Center for Research on Occupational and Environmental Toxicology, Portland, Oregon 97239, USA.

Articles cited by this

An efficient recombination system for chromosome engineering in Escherichia coli. Proc Natl Acad Sci U S A (2000) 17.30

Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda. Microbiol Mol Biol Rev (1999) 6.92

DNA mismatch correction in a defined system. Science (1989) 4.98

Method for determining whether a gene of Escherichia coli is essential: application to the polA gene. J Bacteriol (1984) 4.36

Studies on radiation-sensitive mutants of E. coli. I. Mutants defective in the repair synthesis. Mol Gen Genet (1968) 3.55

Involvement of helicase II (uvrD gene product) and DNA polymerase I in excision mediated by the uvrABC protein complex. Proc Natl Acad Sci U S A (1985) 2.80

Escherichia coli helicase II (urvD gene product) translocates unidirectionally in a 3' to 5' direction. J Biol Chem (1986) 2.75

Effect of DNA polymerase I and DNA helicase II on the turnover rate of UvrABC excision nuclease. Proc Natl Acad Sci U S A (1985) 2.62

UvrD helicase, unlike Rep helicase, dismantles RecA nucleoprotein filaments in Escherichia coli. EMBO J (2004) 2.59

Single-stranded shuttle phagemid for mutagenesis studies in mammalian cells: 8-oxoguanine in DNA induces targeted G.C-->T.A transversions in simian kidney cells. Proc Natl Acad Sci U S A (1993) 2.55

DNA-protein and DNA interstrand cross-linking by cis- and trans-platinum(II) diamminedichloride in L1210 mouse leukemia cells and relation to cytotoxicity. Cancer Res (1979) 2.08

Biological consequences of free radical-damaged DNA bases. Free Radic Biol Med (2002) 2.05

Damage recognition in nucleotide excision repair of DNA. Gene (2000) 1.97

The mechanism of inhibition of topoisomerase IV by quinolone antibacterials. J Biol Chem (1998) 1.96

Escherichia coli helicase II (uvrD) protein can completely unwind fully duplex linear and nicked circular DNA. J Biol Chem (1989) 1.88

A fork-clearing role for UvrD. Mol Microbiol (2005) 1.84

Characterization of Werner syndrome protein DNA helicase activity: directionality, substrate dependence and stimulation by replication protein A. Nucleic Acids Res (1998) 1.80

Hyper-recombination in uvrD mutants of Escherichia coli K-12. Mol Gen Genet (1980) 1.78

Evidence for a physical interaction between the Escherichia coli methyl-directed mismatch repair proteins MutL and UvrD. EMBO J (1998) 1.66

MutS and MutL activate DNA helicase II in a mismatch-dependent manner. J Biol Chem (1998) 1.62

Overexpression, purification, DNA binding, and dimerization of the Escherichia coli uvrD gene product (helicase II). Biochemistry (1993) 1.60

Bipyrimidine photoproducts rather than oxidative lesions are the main type of DNA damage involved in the genotoxic effect of solar UVA radiation. Biochemistry (2003) 1.57

An oligomeric form of E. coli UvrD is required for optimal helicase activity. J Mol Biol (1999) 1.51

Nucleotide excision repair: from E. coli to man. Biochimie (1999) 1.50

Error prone translesion synthesis past gamma-hydroxypropano deoxyguanosine, the primary acrolein-derived adduct in mammalian cells. J Biol Chem (2002) 1.46

Analysis of sequential steps of nucleotide excision repair in Escherichia coli using synthetic substrates containing single psoralen adducts. J Biol Chem (1988) 1.45

Nucleotide excision repair and homologous recombination systems commit differentially to the repair of DNA-protein crosslinks. Mol Cell (2007) 1.39

Stimulation of the UvrABC enzyme-catalyzed repair reactions by the UvrD protein (DNA helicase II). Nucleic Acids Res (1985) 1.36

DNA unwinding enzyme II of Escherichia coli. 2. Characterization of the DNA unwinding activity. Eur J Biochem (1977) 1.35

Evidence for an imino intermediate in the T4 endonuclease V reaction. Biochemistry (1993) 1.35

Escherichia coli helicase II (UvrD) protein initiates DNA unwinding at nicks and blunt ends. Proc Natl Acad Sci U S A (1990) 1.33

Double helicase II (uvrD)-helicase IV (helD) deletion mutants are defective in the recombination pathways of Escherichia coli. J Bacteriol (1993) 1.32

Incision of DNA-protein crosslinks by UvrABC nuclease suggests a potential repair pathway involving nucleotide excision repair. Proc Natl Acad Sci U S A (2002) 1.31

Repair of DNA-polypeptide crosslinks by human excision nuclease. Proc Natl Acad Sci U S A (2006) 1.31

5-Azacytidine induced methyltransferase-DNA adducts block DNA replication in vivo. Cancer Res (2007) 1.31

The Escherichia coli UvrD helicase is essential for Tus removal during recombination-dependent replication restart from Ter sites. Mol Microbiol (2006) 1.23

DNA unwinding enzyme II of Escherichia coli. 1. Purification and characterization of the ATPase activity. Eur J Biochem (1977) 1.23

The Escherichia coli uvrD gene is inducible by DNA damage. Mol Gen Genet (1983) 1.22

Initiation of repair of DNA-polypeptide cross-links by the UvrABC nuclease. Biochemistry (2005) 1.19

Role of the Escherichia coli nucleotide excision repair proteins in DNA replication. J Bacteriol (2000) 1.18

Mutations in uvrD induce the SOS response in Escherichia coli. J Bacteriol (1989) 1.15

Cellular pathways for DNA repair and damage tolerance of formaldehyde-induced DNA-protein crosslinks. DNA Repair (Amst) (2009) 1.14

Replication bypass of the acrolein-mediated deoxyguanine DNA-peptide cross-links by DNA polymerases of the DinB family. Chem Res Toxicol (2008) 1.12

Identification and characterization of Escherichia coli DNA helicase II mutants that exhibit increased unwinding efficiency. J Bacteriol (1998) 1.04

FANCJ helicase uniquely senses oxidative base damage in either strand of duplex DNA and is stimulated by replication protein A to unwind the damaged DNA substrate in a strand-specific manner. J Biol Chem (2009) 1.04

Stimulation of UvrD helicase by UvrAB. J Biol Chem (2009) 0.99

The effect of mutations in the uvrD cistron of Escherichia coli on repair resynthesis. Mutat Res (1982) 0.96

Bleomycin-induced alkaline-labile damage and direct strand breakage of PM2 DNA. Cancer Res (1978) 0.96

Unwinding of forked DNA structures by UvrD. J Mol Biol (2006) 0.92

The reaction mechanism of DNA glycosylase/AP lyases at abasic sites. Biochemistry (2001) 0.91

Site-directed mutagenesis of the NH2 terminus of T4 endonuclease V. The position of the alpha NH2 moiety affects catalytic activity. J Biol Chem (1993) 0.91

Gamma-radiation-induced crosslinking of cell-specific chromosomal nonhistone protein-DNA complexes in HeLa chromatin. Radiat Res (1981) 0.89

Genetic analysis of repair and damage tolerance mechanisms for DNA-protein cross-links in Escherichia coli. J Bacteriol (2009) 0.89

Structure of T4 pyrimidine dimer glycosylase in a reduced imine covalent complex with abasic site-containing DNA. J Mol Biol (2006) 0.88

UvrD303, a hyperhelicase mutant that antagonizes RecA-dependent SOS expression by a mechanism that depends on its C terminus. J Bacteriol (2008) 0.87

Effect of the uvrD3 mutation on ultraviolet radiation-induced DNA-repair replication in Escherichia coli K12. Mutat Res (1981) 0.86

Interactions of DNA helicases with damaged DNA: possible biological consequences. J Biol Chem (2000) 0.86

Inhibition of Werner syndrome helicase activity by benzo[a]pyrene diol epoxide adducts can be overcome by replication protein A. J Biol Chem (2005) 0.85

Analysis of base excision DNA repair of the oxidative lesion 2-deoxyribonolactone and the formation of DNA-protein cross-links. Methods Enzymol (2006) 0.82

In vivo DNA-protein cross-linking by cis- and trans-diamminedichloroplatinum(II). Cancer Res (1987) 0.82

Articles by these authors

The metabolic syndrome resulting from a knockout of the NEIL1 DNA glycosylase. Proc Natl Acad Sci U S A (2006) 2.17

A role for differential variable gene pairing in creating T cell receptors specific for unique major histocompatibility ligands. Immunity (2011) 2.00

Role for DNA polymerase kappa in the processing of N2-N2-guanine interstrand cross-links. J Biol Chem (2008) 1.64

Efficient and error-free replication past a minor-groove DNA adduct by the sequential action of human DNA polymerases iota and kappa. Mol Cell Biol (2004) 1.64

Interstrand DNA cross-links induced by alpha,beta-unsaturated aldehydes derived from lipid peroxidation and environmental sources. Acc Chem Res (2008) 1.60

1,N2-deoxyguanosine adducts of acrolein, crotonaldehyde, and trans-4-hydroxynonenal cross-link to peptides via Schiff base linkage. J Biol Chem (2002) 1.57

Efficient and error-free replication past a minor-groove N2-guanine adduct by the sequential action of yeast Rev1 and DNA polymerase zeta. Mol Cell Biol (2004) 1.47

Error prone translesion synthesis past gamma-hydroxypropano deoxyguanosine, the primary acrolein-derived adduct in mammalian cells. J Biol Chem (2002) 1.46

Translesion synthesis past acrolein-derived DNA adduct, gamma -hydroxypropanodeoxyguanosine, by yeast and human DNA polymerase eta. J Biol Chem (2002) 1.40

Chemistry and biology of DNA containing 1,N(2)-deoxyguanosine adducts of the alpha,beta-unsaturated aldehydes acrolein, crotonaldehyde, and 4-hydroxynonenal. Chem Res Toxicol (2009) 1.38

Incision of DNA-protein crosslinks by UvrABC nuclease suggests a potential repair pathway involving nucleotide excision repair. Proc Natl Acad Sci U S A (2002) 1.31

Comparative evaluation of the bioreactivity and mutagenic spectra of acrolein-derived alpha-HOPdG and gamma-HOPdG regioisomeric deoxyguanosine adducts. Chem Res Toxicol (2003) 1.31

Targeted deletion of the genes encoding NTH1 and NEIL1 DNA N-glycosylases reveals the existence of novel carcinogenic oxidative damage to DNA. DNA Repair (Amst) (2009) 1.24

Foretinib is a potent inhibitor of oncogenic ROS1 fusion proteins. Proc Natl Acad Sci U S A (2013) 1.19

Initiation of repair of DNA-polypeptide cross-links by the UvrABC nuclease. Biochemistry (2005) 1.19

Cellular pathways for DNA repair and damage tolerance of formaldehyde-induced DNA-protein crosslinks. DNA Repair (Amst) (2009) 1.14

Mutagenic potential of DNA-peptide crosslinks mediated by acrolein-derived DNA adducts. Mutat Res (2007) 1.14

Novel enzymatic function of DNA polymerase nu in translesion DNA synthesis past major groove DNA-peptide and DNA-DNA cross-links. Chem Res Toxicol (2010) 1.12

Replication bypass of the acrolein-mediated deoxyguanine DNA-peptide cross-links by DNA polymerases of the DinB family. Chem Res Toxicol (2008) 1.12

Stereospecific formation of interstrand carbinolamine DNA cross-links by crotonaldehyde- and acetaldehyde-derived alpha-CH3-gamma-OH-1,N2-propano-2'-deoxyguanosine adducts in the 5'-CpG-3' sequence. Chem Res Toxicol (2006) 1.11

Human polymorphic variants of the NEIL1 DNA glycosylase. J Biol Chem (2007) 1.10

Replication bypass of interstrand cross-link intermediates by Escherichia coli DNA polymerase IV. J Biol Chem (2008) 1.09

Spectroscopic characterization of interstrand carbinolamine cross-links formed in the 5'-CpG-3' sequence by the acrolein-derived gamma-OH-1,N2-propano-2'-deoxyguanosine DNA adduct. J Am Chem Soc (2005) 1.08

Replication past a trans-4-hydroxynonenal minor-groove adduct by the sequential action of human DNA polymerases iota and kappa. Mol Cell Biol (2006) 1.08

Human DNA polymerase iota promotes replication through a ring-closed minor-groove adduct that adopts a syn conformation in DNA. Mol Cell Biol (2005) 1.06

Evidence for the involvement of DNA repair enzyme NEIL1 in nucleotide excision repair of (5'R)- and (5'S)-8,5'-cyclo-2'-deoxyadenosines. Biochemistry (2010) 1.05

Mammalian cell mutagenesis of the DNA adducts of vinyl chloride and crotonaldehyde. Environ Mol Mutagen (2005) 0.98

8-Oxoguanine DNA glycosylase (OGG1) deficiency increases susceptibility to obesity and metabolic dysfunction. PLoS One (2012) 0.98

Identification of critical residues required for the mutation avoidance function of human MutY (hMYH) and implications in colorectal cancer. Cancer Lett (2004) 0.97

Site-specific DNA cleavage by Chlorella virus topoisomerase II. Biochemistry (2002) 0.97

Determination of active site residues in Escherichia coli endonuclease VIII. J Biol Chem (2001) 0.96

Site-specific mutagenicity of stereochemically defined 1,N2-deoxyguanosine adducts of trans-4-hydroxynonenal in mammalian cells. Environ Mol Mutagen (2003) 0.94

Formation of inter- and intrastrand imine type DNA-DNA cross-links through secondary reactions of aldehydic adducts. Chem Res Toxicol (2005) 0.93

Reaction intermediates in the catalytic mechanism of Escherichia coli MutY DNA glycosylase. J Biol Chem (2004) 0.93

Orientation of the crotonaldehyde-derived N2-[3-Oxo-1(S)-methyl-propyl]-dG DNA adduct hinders interstrand cross-link formation in the 5'-CpG-3' sequence. Chem Res Toxicol (2006) 0.92

DNA damage recognition of mutated forms of UvrB proteins in nucleotide excision repair. Biochemistry (2004) 0.92

Formaldehyde-induced genome instability is suppressed by an XPF-dependent pathway. DNA Repair (Amst) (2011) 0.91

Stochastic simulations of a multi-group compartmental model for Johne's disease on US dairy herds with test-based culling intervention. J Theor Biol (2010) 0.90

DNA cross-link induced by trans-4-hydroxynonenal. Environ Mol Mutagen (2010) 0.90

Mutagenic spectrum of butadiene-derived N1-deoxyinosine adducts and N6,N6-deoxyadenosine intrastrand cross-links in mammalian cells. Chem Res Toxicol (2002) 0.89

Role of high-fidelity Escherichia coli DNA polymerase I in replication bypass of a deoxyadenosine DNA-peptide cross-link. J Bacteriol (2011) 0.89

Structure of T4 pyrimidine dimer glycosylase in a reduced imine covalent complex with abasic site-containing DNA. J Mol Biol (2006) 0.88

Evidence for Escherichia coli polymerase II mutagenic bypass of intrastrand DNA crosslinks. DNA Repair (Amst) (2005) 0.88

Deficiency of the oxidative damage-specific DNA glycosylase NEIL1 leads to reduced germinal center B cell expansion. DNA Repair (Amst) (2009) 0.87

A model of sensitivity: 1,3-butadiene increases mutant frequencies and genomic damage in mice lacking a functional microsomal epoxide hydrolase gene. Environ Mol Mutagen (2003) 0.87

Regulation of DNA glycosylases and their role in limiting disease. Free Radic Res (2012) 0.87

The base excision repair pathway is required for efficient lentivirus integration. PLoS One (2011) 0.86

Intrastrand DNA cross-links as tools for studying DNA replication and repair: two-, three-, and four-carbon tethers between the N(2) positions of adjacent guanines. Biochemistry (2002) 0.86

Variable penetrance of metabolic phenotypes and development of high-fat diet-induced adiposity in NEIL1-deficient mice. Am J Physiol Endocrinol Metab (2011) 0.86

Mutagenic spectra arising from replication bypass of the 2,6-diamino-4-hydroxy-N(5)-methyl formamidopyrimidine adduct in primate cells. Chem Res Toxicol (2013) 0.85

Synthesis and mutagenesis of the butadiene-derived N3 2'-deoxyuridine adducts. Chem Res Toxicol (2006) 0.85

Using vaccination to prevent the invasion of Mycobacterium avium subsp. paratuberculosis in dairy herds: a stochastic simulation study. Prev Vet Med (2013) 0.84

Mechanistic comparisons among base excision repair glycosylases. Free Radic Biol Med (2002) 0.84

Impact of imperfect Mycobacterium avium subsp. paratuberculosis vaccines in dairy herds: a mathematical modeling approach. Prev Vet Med (2012) 0.84

DNA polymerase β gap-filling translesion DNA synthesis. Chem Res Toxicol (2012) 0.84

The stereochemistry of trans-4-hydroxynonenal-derived exocyclic 1,N2-2'-deoxyguanosine adducts modulates formation of interstrand cross-links in the 5'-CpG-3' sequence. Biochemistry (2008) 0.84

Chlorella virus pyrimidine dimer glycosylase excises ultraviolet radiation- and hydroxyl radical-induced products 4,6-diamino-5-formamidopyrimidine and 2,6-diamino-4-hydroxy-5-formamidopyrimidine from DNA. Photochem Photobiol (2002) 0.84

The basal levels of 8-oxoG and other oxidative modifications in intact mitochondrial DNA are low even in repair-deficient (Ogg1(-/-)/Csb(-/-)) mice. Mutat Res (2007) 0.83

Minor groove orientation of the KWKK peptide tethered via the N-terminal amine to the acrolein-derived 1,N2-gamma-hydroxypropanodeoxyguanosine lesion with a trimethylene linkage. Biochemistry (2010) 0.83

Stereospecific structural perturbations arising from adenine N(6) butadiene triol adducts in duplex DNA. Chem Res Toxicol (2004) 0.83

Evidence for multiple imino intermediates and identification of reactive nucleophiles in peptide-catalyzed beta-elimination at abasic sites. Biochemistry (2002) 0.83

Uncoupling of nucleotide flipping and DNA bending by the t4 pyrimidine dimer DNA glycosylase. Biochemistry (2006) 0.83

Leukotriene biosynthesis inhibitor MK886 impedes DNA polymerase activity. Chem Res Toxicol (2013) 0.82

Translesion synthesis past acrolein-derived DNA adducts by human mitochondrial DNA polymerase γ. J Biol Chem (2013) 0.82

Retracted A DNA adenine methyltransferase of Escherichia coli that is cell cycle regulated and essential for viability. J Bacteriol (2004) 0.82

Mispairing of a site specific major groove (2S,3S)-N6-(2,3,4-trihydroxybutyl)-2'-deoxyadenosyl DNA Adduct of butadiene diol epoxide with deoxyguanosine: formation of a dA(anti).dG(anti) pairing interaction. Chem Res Toxicol (2005) 0.82

TAT-mediated delivery of a DNA repair enzyme to skin cells rapidly initiates repair of UV-induced DNA damage. J Invest Dermatol (2010) 0.82

Assessing the potential impact of Salmonella vaccines in an endemically infected dairy herd. J Theor Biol (2009) 0.81

Replication of the 2,6-diamino-4-hydroxy-N(5)-(methyl)-formamidopyrimidine (MeFapy-dGuo) adduct by eukaryotic DNA polymerases. Chem Res Toxicol (2012) 0.81

Replication bypass of N2-deoxyguanosine interstrand cross-links by human DNA polymerases η and ι. Chem Res Toxicol (2012) 0.81

A comprehensive strategy to discover inhibitors of the translesion synthesis DNA polymerase κ. PLoS One (2012) 0.81

Conformational interconversion of the trans-4-hydroxynonenal-derived (6S,8R,11S) 1,N(2)-deoxyguanosine adduct when mismatched with deoxyadenosine in DNA. Chem Res Toxicol (2009) 0.80

Initiation of repair of A/G mismatches is modulated by sequence context. DNA Repair (Amst) (2003) 0.79

Structure of an oligodeoxynucleotide containing a butadiene oxide-derived N1 beta-hydroxyalkyl deoxyinosine adduct in the human N-ras codon 61 sequence. Biochemistry (2005) 0.79

Invasion and transmission of Salmonella Kentucky in an adult dairy herd using approximate Bayesian computation. BMC Vet Res (2013) 0.79