Epigenetic modifications on X chromosomes in marsupial and monotreme mammals and implications for evolution of dosage compensation.

PubWeight™: 1.10‹?› | Rank: Top 10%

🔗 View Article (PMC 2955130)

Published in Proc Natl Acad Sci U S A on September 22, 2010

Authors

Willem Rens1, Margaret S Wallduck, Frances L Lovell, Malcolm A Ferguson-Smith, Anne C Ferguson-Smith

Author Affiliations

1: Department of Veterinary Medicine, University of Cambridge, Cambridge CB3 OES, United Kingdom.

Articles citing this

Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation. Nat Rev Genet (2011) 2.39

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biol (2011) 2.18

Early developmental conditioning of later health and disease: physiology or pathophysiology? Physiol Rev (2014) 1.86

Chromosome-wide DNA methylation analysis predicts human tissue-specific X inactivation. Hum Genet (2011) 1.60

Mechanisms and evolutionary patterns of mammalian and avian dosage compensation. PLoS Biol (2012) 1.43

Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway. Nat Struct Mol Biol (2013) 1.33

The sequence, structure and evolutionary features of HOTAIR in mammals. BMC Evol Biol (2011) 1.30

Evolutionary diversity and developmental regulation of X-chromosome inactivation. Hum Genet (2011) 1.20

X-inactivation and X-reactivation: epigenetic hallmarks of mammalian reproduction and pluripotent stem cells. Hum Genet (2011) 1.14

The origin and evolution of vertebrate sex chromosomes and dosage compensation. Heredity (Edinb) (2011) 1.09

Rsx is a metatherian RNA with Xist-like properties in X-chromosome inactivation. Nature (2012) 1.08

Advances in understanding chromosome silencing by the long non-coding RNA Xist. Philos Trans R Soc Lond B Biol Sci (2013) 1.04

Evolution from XIST-independent to XIST-controlled X-chromosome inactivation: epigenetic modifications in distantly related mammals. PLoS One (2011) 1.01

Transcription precedes loss of Xist coating and depletion of H3K27me3 during X-chromosome reprogramming in the mouse inner cell mass. Development (2011) 0.98

Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica. Genome Res (2013) 0.97

Role of ATRX in chromatin structure and function: implications for chromosome instability and human disease. Reproduction (2011) 0.86

Setdb1-mediated H3K9 methylation is enriched on the inactive X and plays a role in its epigenetic silencing. Epigenetics Chromatin (2016) 0.83

A cross-species comparison of escape from X inactivation in Eutheria: implications for evolution of X chromosome inactivation. Chromosoma (2011) 0.83

Evolution of vertebrate sex chromosomes and dosage compensation. Nat Rev Genet (2015) 0.80

Paternal X inactivation does not correlate with X chromosome evolutionary strata in marsupials. BMC Evol Biol (2014) 0.79

Independent evolution of transcriptional inactivation on sex chromosomes in birds and mammals. PLoS Genet (2013) 0.79

Global DNA Methylation patterns on marsupial and devil facial tumour chromosomes. Mol Cytogenet (2015) 0.79

The evolutionary pathway of x chromosome inactivation in mammals. Acta Naturae (2013) 0.78

Dynamics of the two heterochromatin types during imprinted X chromosome inactivation in vole Microtus levis. PLoS One (2014) 0.77

Marsupial genome sequences: providing insight into evolution and disease. Scientifica (Cairo) (2012) 0.76

Finding a balance: how diverse dosage compensation strategies modify histone h4 to regulate transcription. Genet Res Int (2011) 0.76

Conservation of Regional Variation in Sex-Specific Sex Chromosome Regulation. Genetics (2015) 0.76

Genome-wide histone state profiling of fibroblasts from the opossum, Monodelphis domestica, identifies the first marsupial-specific imprinted gene. BMC Genomics (2014) 0.75

Immunofluorescent staining reveals hypermethylation of microchromosomes in the central bearded dragon, Pogona vitticeps. Mol Cytogenet (2015) 0.75

Marsupials as models for understanding the role of chromosome rearrangements in evolution and disease. Chromosoma (2016) 0.75

Epigenetic modifications in sex heterochromatin of vole rodents. Chromosoma (2014) 0.75

Articles cited by this

Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins. Nature (2001) 19.67

The delayed rise of present-day mammals. Nature (2007) 15.98

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science (2008) 13.79

Role of histone H3 lysine 27 methylation in X inactivation. Science (2003) 9.85

A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin. Genes Dev (2004) 8.66

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature (2007) 7.91

Gene body-specific methylation on the active X chromosome. Science (2007) 6.33

The degeneration of Y chromosomes. Philos Trans R Soc Lond B Biol Sci (2000) 5.22

The inactive X chromosome in female mammals is distinguished by a lack of histone H4 acetylation, a cytogenetic marker for gene expression. Cell (1993) 4.76

Dosage compensation of the active X chromosome in mammals. Nat Genet (2005) 4.31

Methylation of histone H3 at Lys-9 is an early mark on the X chromosome during X inactivation. Cell (2001) 4.21

Dosage compensation in mammals: fine-tuning the expression of the X chromosome. Genes Dev (2006) 4.17

A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization. Mol Cell (2006) 3.67

The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene. Science (2006) 3.50

X-chromosome inactivation: a repeat hypothesis. Cytogenet Cell Genet (1998) 2.82

Recent advances in X-chromosome inactivation. Curr Opin Cell Biol (2004) 2.65

X-Inactivation and histone H4 acetylation in embryonic stem cells. Dev Biol (1996) 2.50

In the platypus a meiotic chain of ten sex chromosomes shares genes with the bird Z and mammal X chromosomes. Nature (2004) 2.44

The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting. Nature (2009) 2.40

Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes. Genome Res (2008) 2.30

Dosage compensation in the mouse balances up-regulation and silencing of X-linked genes. PLoS Biol (2007) 2.06

Sensing X chromosome pairs before X inactivation via a novel X-pairing region of the Xic. Science (2007) 1.83

Multiple spatially distinct types of facultative heterochromatin on the human inactive X chromosome. Proc Natl Acad Sci U S A (2004) 1.80

Histone H2A variants and the inactive X chromosome: identification of a second macroH2A variant. Hum Mol Genet (2001) 1.71

Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals. Proc Natl Acad Sci U S A (2009) 1.52

Evidence of Xist RNA-independent initiation of mouse imprinted X-chromosome inactivation. Nature (2009) 1.49

Methylation status of CpG-rich islands on active and inactive mouse X chromosomes. Mamm Genome (1991) 1.49

Histone H3 lysine 9 methylation occurs rapidly at the onset of random X chromosome inactivation. Curr Biol (2002) 1.36

Resolution and evolution of the duck-billed platypus karyotype with an X1Y1X2Y2X3Y3X4Y4X5Y5 male sex chromosome constitution. Proc Natl Acad Sci U S A (2004) 1.32

Chromosome specific paints from a high resolution flow karyotype of the mouse. Nat Genet (1995) 1.28

Chromatin of the Barr body: histone and non-histone proteins associated with or excluded from the inactive X chromosome. Hum Mol Genet (2003) 1.28

The multiple sex chromosomes of platypus and echidna are not completely identical and several share homology with the avian Z. Genome Biol (2007) 1.26

Karyotype relationships between four distantly related marsupials revealed by reciprocal chromosome painting. Chromosome Res (1999) 1.25

Differential underacetylation of histones H2A, H3 and H4 on the inactive X chromosome in human female cells. Hum Genet (1996) 1.24

A dual origin of the Xist gene from a protein-coding gene and a set of transposable elements. PLoS One (2008) 1.23

The status of dosage compensation in the multiple X chromosomes of the platypus. PLoS Genet (2008) 1.20

When X-inactivation meets pluripotency: an intimate rendezvous. FEBS Lett (2009) 1.13

Reversal and convergence in marsupial chromosome evolution. Cytogenet Genome Res (2003) 1.08

Monoallelic gene expression in mammals. Chromosoma (2009) 1.08

Female-specific hyperacetylation of histone H4 in the chicken Z chromosome. Chromosome Res (2005) 1.07

Key features of the X inactivation process are conserved between marsupials and eutherians. Curr Biol (2009) 1.06

Histone underacetylation is an ancient component of mammalian X chromosome inactivation. Proc Natl Acad Sci U S A (1997) 1.05

Autosomal location of genes from the conserved mammalian X in the platypus (Ornithorhynchus anatinus): implications for mammalian sex chromosome evolution. Chromosome Res (2005) 1.03

Common methylation characteristics of sex chromosomes in somatic and germ cells from mouse, lemur and human. Chromosome Res (2000) 1.00

Specific patterns of histone marks accompany X chromosome inactivation in a marsupial. Chromosome Res (2009) 0.97

Karyotype relationships between distantly related marsupials from South America and Australia. Chromosome Res (2001) 0.97

Spatial distribution of histone isoforms on the bovine active and inactive X chromosomes. Sex Dev (2008) 0.88

X chromosome inactivation and Xist evolution in a rodent lacking LINE-1 activity. PLoS One (2009) 0.86

Articles by these authors

The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science (2008) 8.45

Parental origin of sequence variants associated with complex diseases. Nature (2009) 7.21

The DNA sequence of the human X chromosome. Nature (2005) 6.97

A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain. Genome Res (2004) 5.77

Mechanisms regulating imprinted genes in clusters. Curr Opin Cell Biol (2007) 5.49

A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints. Dev Cell (2008) 4.80

Imprinted microRNA genes transcribed antisense to a reciprocally imprinted retrotransposon-like gene. Nat Genet (2003) 4.68

Asymmetric regulation of imprinting on the maternal and paternal chromosomes at the Dlk1-Gtl2 imprinted cluster on mouse chromosome 12. Nat Genet (2003) 4.25

Continuing anxiety about BSE. Vet Rec (2003) 3.21

Genomic imprinting at the mammalian Dlk1-Dio3 domain. Trends Genet (2008) 2.92

Mammalian genomic imprinting. Cold Spring Harb Perspect Biol (2011) 2.59

Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. Hum Mol Genet (2002) 2.55

In the platypus a meiotic chain of ten sex chromosomes shares genes with the bird Z and mammal X chromosomes. Nature (2004) 2.44

Epigenetic analysis of the Dlk1-Gtl2 imprinted domain on mouse chromosome 12: implications for imprinting control from comparison with Igf2-H19. Hum Mol Genet (2002) 2.33

Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes. Genome Res (2008) 2.30

Large-scale population study of human cell lines indicates that dosage compensation is virtually complete. PLoS Genet (2007) 2.27

Postnatal loss of Dlk1 imprinting in stem cells and niche astrocytes regulates neurogenesis. Nature (2011) 2.22

Deletions and epimutations affecting the human 14q32.2 imprinted region in individuals with paternal and maternal upd(14)-like phenotypes. Nat Genet (2008) 2.16

The evolution of the DLK1-DIO3 imprinted domain in mammals. PLoS Biol (2008) 2.05

Developmental dynamics of the definitive mouse placenta assessed by stereology. Biol Reprod (2004) 1.95

Epigenetics: perceptive enzymes. Nature (2007) 1.71

The IG-DMR and the MEG3-DMR at human chromosome 14q32.2: hierarchical interaction and distinct functional properties as imprinting control centers. PLoS Genet (2010) 1.66

Epigenetic status of human embryonic stem cells. Nat Genet (2005) 1.64

High-resolution map and imprinting analysis of the Gtl2-Dnchc1 domain on mouse chromosome 12. Genomics (2005) 1.60

Gene dosage effects of the imprinted delta-like homologue 1 (dlk1/pref1) in development: implications for the evolution of imprinting. PLoS Genet (2009) 1.58

Differential regulation of imprinting in the murine embryo and placenta by the Dlk1-Dio3 imprinting control region. Development (2006) 1.55

Status of genomic imprinting in human embryonic stem cells as revealed by a large cohort of independently derived and maintained lines. Hum Mol Genet (2007) 1.55

Genomic imprinting, growth control and the allocation of nutritional resources: consequences for postnatal life. Curr Opin Endocrinol Diabetes Obes (2007) 1.54

Epigenetic regulation of the neural transcriptome: the meaning of the marks. Nat Neurosci (2010) 1.44

Mutation in folate metabolism causes epigenetic instability and transgenerational effects on development. Cell (2013) 1.42

Genomic imprinting contributes to thyroid hormone metabolism in the mouse embryo. Curr Biol (2002) 1.40

Multiple self-healing squamous epithelioma is caused by a disease-specific spectrum of mutations in TGFBR1. Nat Genet (2011) 1.39

Disruption of Netrin G1 by a balanced chromosome translocation in a girl with Rett syndrome. Eur J Hum Genet (2005) 1.38

An unbiased assessment of the role of imprinted genes in an intergenerational model of developmental programming. PLoS Genet (2012) 1.34

Resolution and evolution of the duck-billed platypus karyotype with an X1Y1X2Y2X3Y3X4Y4X5Y5 male sex chromosome constitution. Proc Natl Acad Sci U S A (2004) 1.32

Transgenerational epigenetic inheritance: how important is it? Nat Rev Genet (2013) 1.32

High-frequency generation of viable mice from engineered bi-maternal embryos. Nat Biotechnol (2007) 1.28

Restricted co-expression of Dlk1 and the reciprocally imprinted non-coding RNA, Gtl2: implications for cis-acting control. Dev Biol (2007) 1.28

The multiple sex chromosomes of platypus and echidna are not completely identical and several share homology with the avian Z. Genome Biol (2007) 1.26

Uniparental disomy and human disease: an overview. Am J Med Genet C Semin Med Genet (2010) 1.25

The atypical mammalian ligand Delta-like homologue 1 (Dlk1) can regulate Notch signalling in Drosophila. BMC Dev Biol (2008) 1.24

The evolution of imprinting: chromosomal mapping of orthologues of mammalian imprinted domains in monotreme and marsupial mammals. BMC Evol Biol (2007) 1.19

Molecular cytogenetic definition of the chicken genome: the first complete avian karyotype. Genetics (2004) 1.17

Acclimatization of skeletal muscle mitochondria to high-altitude hypoxia during an ascent of Everest. FASEB J (2011) 1.15

A small family of sushi-class retrotransposon-derived genes in mammals and their relation to genomic imprinting. J Mol Evol (2005) 1.14

Multidirectional cross-species painting illuminates the history of karyotypic evolution in Perissodactyla. Chromosome Res (2008) 1.14

Chromosome homologies of the highly rearranged karyotypes of four Akodon species (Rodentia, Cricetidae) resolved by reciprocal chromosome painting: the evolution of the lowest diploid number in rodents. Chromosome Res (2009) 1.12

Genomic restructuring in the Tasmanian devil facial tumour: chromosome painting and gene mapping provide clues to evolution of a transmissible tumour. PLoS Genet (2012) 1.12

Strong conservation of the bird Z chromosome in reptilian genomes is revealed by comparative painting despite 275 million years divergence. Chromosoma (2011) 1.11

Imprinting of the human L3MBTL gene, a polycomb family member located in a region of chromosome 20 deleted in human myeloid malignancies. Proc Natl Acad Sci U S A (2004) 1.11

Imprinted gene dosage is critical for the transition to independent life. Cell Metab (2012) 1.10

Genomic imprinting. Curr Biol (2004) 1.08

Reciprocal chromosome painting between white hawk (Leucopternis albicollis) and chicken reveals extensive fusions and fissions during karyotype evolution of accipitridae (Aves, Falconiformes). Chromosome Res (2010) 1.08

Imprinted X inactivation and reprogramming in the preimplantation mouse embryo. Hum Mol Genet (2005) 1.07

Avian comparative genomics: reciprocal chromosome painting between domestic chicken (Gallus gallus) and the stone curlew (Burhinus oedicnemus, Charadriiformes)--an atypical species with low diploid number. Chromosome Res (2009) 1.05

An obesogenic diet during mouse pregnancy modifies maternal nutrient partitioning and the fetal growth trajectory. FASEB J (2013) 1.05

Distinguishing epigenetic marks of developmental and imprinting regulation. Epigenetics Chromatin (2010) 1.04

Comparative genome maps of the pangolin, hedgehog, sloth, anteater and human revealed by cross-species chromosome painting: further insight into the ancestral karyotype and genome evolution of eutherian mammals. Chromosome Res (2006) 1.03

Molecular mechanisms regulating phenotypic outcome in paternal and maternal uniparental disomy for chromosome 14. Epigenetics (2008) 1.03

Epigenetic reprogramming: is deamination key to active DNA demethylation? Reproduction (2011) 1.03

DNMT1 and AIM1 Imprinting in human placenta revealed through a genome-wide screen for allele-specific DNA methylation. BMC Genomics (2013) 1.02

Developing essential professional skills: a framework for teaching and learning about feedback. BMC Med Educ (2005) 1.02

Genomic imprinting as an adaptative model of developmental plasticity. FEBS Lett (2011) 1.00

The proto-oncogene C-KIT maps to canid B-chromosomes. Chromosome Res (2005) 1.00

Multiple rearrangements in cryptic species of electric knifefish, Gymnotus carapo (Gymnotidae, Gymnotiformes) revealed by chromosome painting. BMC Genet (2010) 0.99

Chromosomal evolution of Arvicolinae (Cricetidae, Rodentia). I. The genome homology of tundra vole, field vole, mouse and golden hamster revealed by comparative chromosome painting. Chromosome Res (2007) 0.99

Conservation of chromosome arrangement and position of the X in mammalian sperm suggests functional significance. Chromosome Res (2003) 0.98

Nonallelic transcriptional roles of CTCF and cohesins at imprinted loci. Mol Cell Biol (2011) 0.96

The genome phylogeny of domestic cat, red panda and five mustelid species revealed by comparative chromosome painting and G-banding. Chromosome Res (2002) 0.96

Chromosomal evolution in Gekkonidae. I. Chromosome painting between Gekko and Hemidactylus species reveals phylogenetic relationships within the group. Chromosome Res (2011) 0.95

Refined genome-wide comparative map of the domestic horse, donkey and human based on cross-species chromosome painting: insight into the occasional fertility of mules. Chromosome Res (2004) 0.94

Characterizing the chromosomes of the platypus (Ornithorhynchus anatinus). Chromosome Res (2008) 0.94

Karyotype evolution and phylogenetic relationships of hamsters (Cricetidae, Muroidea, Rodentia) inferred from chromosomal painting and banding comparison. Chromosome Res (2007) 0.94

CG dinucleotide periodicities recognized by the Dnmt3a-Dnmt3L complex are distinctive at retroelements and imprinted domains. Mamm Genome (2009) 0.93

Transcription of a protein-coding gene on B chromosomes of the Siberian roe deer (Capreolus pygargus). BMC Biol (2013) 0.92

Silencing of miR-370 in human cholangiocarcinoma by allelic loss and interleukin-6 induced maternal to paternal epigenotype switch. PLoS One (2012) 0.92

Epigenetic state and expression of imprinted genes in umbilical cord correlates with growth parameters in human pregnancy. J Med Genet (2012) 0.91

Flying lemurs--the 'flying tree shrews'? Molecular cytogenetic evidence for a Scandentia-Dermoptera sister clade. BMC Biol (2008) 0.91

Imprinted small RNA genes. Biol Chem (2004) 0.91

Genomic matrix attachment region and chromosome conformation capture quantitative real time PCR assays identify novel putative regulatory elements at the imprinted Dlk1/Gtl2 locus. J Biol Chem (2008) 0.91

Chromosomal evolution of Arvicolinae (Cricetidae, Rodentia). III. Karyotype relationships of ten Microtus species. Chromosome Res (2010) 0.90

Evolution of genome organizations of squirrels (Sciuridae) revealed by cross-species chromosome painting. Chromosome Res (2004) 0.90

Phenotypic outcomes of imprinted gene models in mice: elucidation of pre- and postnatal functions of imprinted genes. Annu Rev Genomics Hum Genet (2014) 0.90

Cross-species chromosome painting in Cetartiodactyla: reconstructing the karyotype evolution in key phylogenetic lineages. Chromosome Res (2009) 0.90

Reciprocal chromosome painting between three laboratory rodent species. Mamm Genome (2006) 0.90

Conservation of chromosomes syntenic with avian autosomes in squamate reptiles revealed by comparative chromosome painting. Chromosoma (2012) 0.89

Meiotic analysis of XX/XY and neo-XX/XY sex chromosomes in Phyllostomidae by cross-species chromosome painting revealing a common chromosome 15-XY rearrangement in Stenodermatinae. Chromosome Res (2010) 0.88

Proteins involved in establishment and maintenance of imprinted methylation marks. Brief Funct Genomics (2012) 0.88

Developmental biology: the X-inactivation yo-yo. Nature (2005) 0.87

L3mbtl, the mouse orthologue of the imprinted L3MBTL, displays a complex pattern of alternative splicing and escapes genomic imprinting. Genomics (2005) 0.87

Status of genomic imprinting in epigenetically distinct pluripotent stem cells. Stem Cells (2012) 0.87

Prenatal Diagnosis: past, present, and future. Prenat Diagn (2010) 0.87

Cross-species chromosome painting among camel, cattle, pig and human: further insights into the putative Cetartiodactyla ancestral karyotype. Chromosome Res (2007) 0.87

Differentiation of sex chromosomes and karyotypic evolution in the eye-lid geckos (Squamata: Gekkota: Eublepharidae), a group with different modes of sex determination. Chromosome Res (2010) 0.86

Search for the sex-determining switch in monotremes: mapping WT1, SF1, LHX1, LHX2, FGF9, WNT4, RSPO1 and GATA4 in platypus. Chromosome Res (2007) 0.86

Variable patterns of Y chromosome homology in Akodontini rodents (Sigmodontinae): a phylogenetic signal revealed by chromosome painting. Chromosome Res (2012) 0.85

Human embryonic stem cells as a model for studying epigenetic regulation during early development. Cell Cycle (2005) 0.85

Cooperativity of imprinted genes inactivated by acquired chromosome 20q deletions. J Clin Invest (2013) 0.85

Genomic imprinting variations in the mouse type 3 deiodinase gene between tissues and brain regions. Mol Endocrinol (2014) 0.84