PubRank

Huanming Yang

Author PubWeight™ 635.34‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 A second generation human haplotype map of over 3.1 million SNPs. Nature 2007 85.39
2 The diploid genome sequence of an Asian individual. Nature 2008 46.29
3 De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 2009 45.91
4 A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010 43.63
5 A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 2002 42.78
6 SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 2012 20.89
7 International network of cancer genome projects. Nature 2010 20.35
8 Genome-wide detection and characterization of positive selection in human populations. Nature 2007 17.27
9 SNP detection for massively parallel whole-genome resequencing. Genome Res 2009 15.96
10 The sequence and de novo assembly of the giant panda genome. Nature 2009 15.76
11 A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 2012 11.68
12 Sequencing of 50 human exomes reveals adaptation to high altitude. Science 2010 11.27
13 The genome of the cucumber, Cucumis sativus L. Nat Genet 2009 8.19
14 The Genomes of Oryza sativa: a history of duplications. PLoS Biol 2005 7.67
15 Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med 2011 7.11
16 A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science 2004 6.62
17 Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder. Nat Genet 2011 5.73
18 Human Y chromosome base-substitution mutation rate measured by direct sequencing in a deep-rooting pedigree. Curr Biol 2009 5.70
19 Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor. Cell 2012 5.62
20 Building the sequence map of the human pan-genome. Nat Biotechnol 2009 5.53
21 Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants. Nat Genet 2010 5.44
22 The oyster genome reveals stress adaptation and complexity of shell formation. Nature 2012 5.30
23 A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature 2004 5.24
24 Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell 2012 5.16
25 RePS: a sequence assembler that masks exact repeats identified from the shotgun data. Genome Res 2002 4.35
26 The DNA methylome of human peripheral blood mononuclear cells. PLoS Biol 2010 4.25
27 Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet 2010 4.06
28 Whole-genome and whole-exome sequencing of bladder cancer identifies frequent alterations in genes involved in sister chromatid cohesion and segregation. Nat Genet 2013 3.87
29 The genetic legacy of the Mongols. Am J Hum Genet 2003 3.84
30 Frequent mutations of genes encoding ubiquitin-mediated proteolysis pathway components in clear cell renal cell carcinoma. Nat Genet 2011 3.66
31 Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat Biotechnol 2011 3.51
32 Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature 2013 3.40
33 Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res 2010 3.34
34 Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans. DNA Res 2004 2.95
35 Whole-genome sequence of Schistosoma haematobium. Nat Genet 2012 2.91
36 Draft genome of the wheat A-genome progenitor Triticum urartu. Nature 2013 2.86
37 BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. Nucleic Acids Res 2004 2.69
38 Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx). Science 2009 2.68
39 Low incidence of DNA sequence variation in human induced pluripotent stem cells generated by nonintegrating plasmid expression. Cell Stem Cell 2012 2.61
40 A complete sequence of the T. tengcongensis genome. Genome Res 2002 2.60
41 Exome sequencing identifies ZNF644 mutations in high myopia. PLoS Genet 2011 2.52
42 SilkDB: a knowledgebase for silkworm biology and genomics. Nucleic Acids Res 2005 2.50
43 Detection of clinically relevant genetic variants in autism spectrum disorder by whole-genome sequencing. Am J Hum Genet 2013 2.47
44 A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates. PLoS One 2007 2.47
45 Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly. Nat Biotechnol 2011 2.45
46 RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings. Cell Res 2012 2.41
47 Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Nat Biotechnol 2011 2.37
48 The yak genome and adaptation to life at high altitude. Nat Genet 2012 2.34
49 Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing. BMC Genomics 2005 2.34
50 Male demography in East Asia: a north-south contrast in human population expansion times. Genetics 2006 2.30
51 Ascaris suum draft genome. Nature 2011 2.16
52 Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research. Nucleic Acids Res 2006 2.14
53 A heterozygous moth genome provides insights into herbivory and detoxification. Nat Genet 2013 2.13
54 A comparison of rice chloroplast genomes. Plant Physiol 2004 1.85
55 Integrated profiling of microRNAs and mRNAs: microRNAs located on Xq27.3 associate with clear cell renal cell carcinoma. PLoS One 2010 1.82
56 MethyCancer: the database of human DNA methylation and cancer. Nucleic Acids Res 2007 1.81
57 ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun. PLoS Comput Biol 2005 1.71
58 Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota. Nat Commun 2013 1.65
59 Origin and evolution of new exons in rodents. Genome Res 2005 1.57
60 The co-occurrence of mtDNA mutations on different oxidative phosphorylation subunits, not detected by haplogroup analysis, affects human longevity and is population specific. Aging Cell 2013 1.56
61 High-resolution mapping of genotype-phenotype relationships in cri du chat syndrome using array comparative genomic hybridization. Am J Hum Genet 2005 1.51
62 Recent spread of a Y-chromosomal lineage in northern China and Mongolia. Am J Hum Genet 2005 1.46
63 ChickVD: a sequence variation database for the chicken genome. Nucleic Acids Res 2005 1.45
64 Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation. Nat Genet 2012 1.43
65 Genetic basis of Y-linked hearing impairment. Am J Hum Genet 2013 1.42
66 Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Genome Biol 2007 1.39
67 Draft genome sequence of the mulberry tree Morus notabilis. Nat Commun 2013 1.38
68 The Trw type IV secretion system of Bartonella mediates host-specific adhesion to erythrocytes. PLoS Pathog 2010 1.37
69 Consistent deregulation of gene expression between human and murine MLL rearrangement leukemias. Cancer Res 2009 1.35
70 Assessment of immunoreactive synthetic peptides from the structural proteins of severe acute respiratory syndrome coronavirus. Clin Chem 2003 1.34
71 Genomic insights into salt adaptation in a desert poplar. Nat Commun 2013 1.30
72 High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus. Nat Commun 2013 1.28
73 An atlas of DNA methylomes in porcine adipose and muscle tissues. Nat Commun 2012 1.28
74 The mitochondrial genome of the thermal dimorphic fungus Penicillium marneffei is more closely related to those of molds than yeasts. FEBS Lett 2003 1.26
75 The YH database: the first Asian diploid genome database. Nucleic Acids Res 2009 1.22
76 Mutations in ABCB6 cause dyschromatosis universalis hereditaria. J Invest Dermatol 2013 1.21
77 Piglets cloned from induced pluripotent stem cells. Cell Res 2012 1.19
78 An unusual haplotype structure on human chromosome 8p23 derived from the inversion polymorphism. Hum Mutat 2008 1.19
79 Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer. Gigascience 2012 1.18
80 Differential DNA methylation in discrete developmental stages of the parasitic nematode Trichinella spiralis. Genome Biol 2012 1.16
81 The sequence and analysis of a Chinese pig genome. Gigascience 2012 1.15
82 Comparative mRNA and microRNA expression profiling of three genitourinary cancers reveals common hallmarks and cancer-specific molecular events. PLoS One 2011 1.15
83 A genome sequence of novel SARS-CoV isolates: the genotype, GD-Ins29, leads to a hypothesis of viral transmission in South China. Genomics Proteomics Bioinformatics 2003 1.06
84 Pseudogene accumulation might promote the adaptive microevolution of Yersinia pestis. J Med Microbiol 2005 1.04
85 Detecting novel low-abundant transcripts in Drosophila. RNA 2005 1.02
86 The population history of the Xibe in northern China: a comparison of autosomal, mtDNA and Y-chromosomal analyses of migration and gene flow. Forensic Sci Int Genet 2007 0.97
87 Exome capture sequencing of adenoma reveals genetic alterations in multiple cellular pathways at the early stage of colorectal tumorigenesis. PLoS One 2013 0.97
88 Association study of a new schizophrenia susceptibility locus of 10q24.32-33 in a Han Chinese population. Schizophr Res 2012 0.96
89 Clinical evaluation and mitochondrial DNA sequence analysis in three Chinese families with Leber's hereditary optic neuropathy. Biochem Biophys Res Commun 2005 0.96
90 Polymorphisms of DNA repair genes: ADPRT, XRCC1, and XPD and cancer risk in genetic epidemiology. Methods Mol Biol 2009 0.95
91 Omics-based profiling of carcinoma of the breast and matched regional lymph node metastasis. Proteomics 2008 0.95
92 Gene identification and expression analysis of 86,136 Expressed Sequence Tags (EST) from the rice genome. Genomics Proteomics Bioinformatics 2003 0.95
93 An improved method for genome wide DNA methylation profiling correlated to transcription and genomic instability in two breast cancer cell lines. BMC Genomics 2009 0.95
94 Integrative analyses of gene expression and DNA methylation profiles in breast cancer cell line models of tamoxifen-resistance indicate a potential role of cells with stem-like properties. Breast Cancer Res 2013 0.94
95 Association of PDE4B polymorphisms and schizophrenia in Northwestern Han Chinese. Hum Genet 2011 0.94
96 A protein chip approach for high-throughput antigen identification and characterization. Proteomics 2007 0.93
97 Modeling and docking of the three-dimensional structure of the human melanocortin 4 receptor. J Protein Chem 2003 0.92
98 A systematic analysis on DNA methylation and the expression of both mRNA and microRNA in bladder cancer. PLoS One 2011 0.91
99 High efficiency of BRCA1 knockout using rAAV-mediated gene targeting: developing a pig model for breast cancer. Transgenic Res 2010 0.89
100 Determination of the 'critical region' for cat-like cry of Cri-du-chat syndrome and analysis of candidate genes by quantitative PCR. Eur J Hum Genet 2005 0.88
101 Multilayered molecular profiling supported the monoclonal origin of metastatic renal cell carcinoma. Int J Cancer 2013 0.86
102 Evolutionary transients in the rice transcriptome. Genomics Proteomics Bioinformatics 2010 0.86
103 Complete genome sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04). Genomics Proteomics Bioinformatics 2003 0.85
104 SARS-associated coronavirus transmitted from human to pig. Emerg Infect Dis 2005 0.84
105 Comparison of efficiency of open pulled straw (OPS) and Cryotop vitrification for cryopreservation of in vitro matured pig oocytes. Cryo Letters 2009 0.83
106 MyBASE: a database for genome polymorphism and gene function studies of Mycobacterium. BMC Microbiol 2009 0.83
107 Erratum: Camelid genomes reveal evolution and adaptation to desert environments. Nat Commun 2015 0.83
108 Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species. Genome Biol 2014 0.82
109 Acquisition of docetaxel resistance in breast cancer cells reveals upregulation of ABCB1 expression as a key mediator of resistance accompanied by discrete upregulation of other specific genes and pathways. Tumour Biol 2015 0.82
110 Deep sequencing identifies regulated small RNAs in Dugesia japonica. Mol Biol Rep 2013 0.81
111 A comprehensive crop genome research project: the Superhybrid Rice Genome Project in China. Philos Trans R Soc Lond B Biol Sci 2007 0.81
112 High hydrostatic pressure treatment of porcine oocytes before handmade cloning improves developmental competence and cryosurvival. Cloning Stem Cells 2008 0.81
113 Gene expression profiling in rice young panicle and vegetative organs and identification of panicle-specific genes through known gene functions. Mol Genet Genomics 2005 0.80
114 "Three kingdoms" to romance. Genomics Proteomics Bioinformatics 2003 0.80
115 The C-terminal portion of the nucleocapsid protein demonstrates SARS-CoV antigenicity. Genomics Proteomics Bioinformatics 2003 0.80
116 DNA copy number aberrations in breast cancer by array comparative genomic hybridization. Genomics Proteomics Bioinformatics 2009 0.80
117 HLA-A gene polymorphism defined by high-resolution sequence-based typing in 161 Northern Chinese Han people. Genomics Proteomics Bioinformatics 2003 0.80
118 Codon Usage Patterns in Corynebacterium glutamicum: Mutational Bias, Natural Selection and Amino Acid Conservation. Comp Funct Genomics 2010 0.79
119 Single-nucleotide variations in the genes encoding the mitochondrial Hsp60/Hsp10 chaperone system and their disease-causing potential. J Hum Genet 2006 0.79
120 Structure-based preliminary analysis of immunity and virulence of SARS coronavirus. Viral Immunol 2004 0.78
121 Comparison of gene expression and genome-wide DNA methylation profiling between phenotypically normal cloned pigs and conventionally bred controls. PLoS One 2011 0.78
122 The M protein of SARS-CoV: basic structural and immunological properties. Genomics Proteomics Bioinformatics 2003 0.78
123 The structure analysis and antigenicity study of the N protein of SARS-CoV. Genomics Proteomics Bioinformatics 2003 0.78
124 Atomic force microscope investigation of large-circle DNA molecules. Anal Biochem 2004 0.78
125 Development of transgenic minipigs with expression of antimorphic human cryptochrome 1. PLoS One 2013 0.78
126 Piglets born from vitrified cloned blastocysts produced with a simplified method of delipation and nuclear transfer. Cloning Stem Cells 2007 0.78
127 The DNA sequence, annotation and analysis of human chromosome 3. Nature 2006 0.78
128 Genomic organization, transcript variants and comparative analysis of the human nucleoporin 155 (NUP155) gene. Gene 2002 0.78
129 Osmotic stress induced by sodium chloride, sucrose or trehalose improves cryotolerance and developmental competence of porcine oocytes. Reprod Fertil Dev 2009 0.78
130 Transcriptome and network changes in climbers at extreme altitudes. PLoS One 2012 0.77
131 Multiple gene dysfunctions lead to high cancer-susceptibility: evidences from a whole-exome sequencing study. Am J Cancer Res 2011 0.77
132 TIMP-1 overexpression does not affect sensitivity to HER2-targeting drugs in the HER2-gene-amplified SK-BR-3 human breast cancer cell line. Tumour Biol 2013 0.76
133 Evolution and variation of the SARS-CoV genome. Genomics Proteomics Bioinformatics 2003 0.76
134 Generation of outbred Ace2 knockout mice by RNA transfection of TALENs displaying colitis reminiscent pathophysiology and inflammation. Transgenic Res 2014 0.76
135 The structural characterization and antigenicity of the S protein of SARS-CoV. Genomics Proteomics Bioinformatics 2003 0.75
136 The R protein of SARS-CoV: analyses of structure and function based on four complete genome sequences of isolates BJ01-BJ04. Genomics Proteomics Bioinformatics 2003 0.75
137 The E protein is a multifunctional membrane protein of SARS-CoV. Genomics Proteomics Bioinformatics 2003 0.75
138 A lithium-sensitive and sodium-tolerant 3'-phosphoadenosine-5'-phosphatase encoded by halA from the cyanobacterium Arthrospira platensis is closely related to its counterparts from yeasts and plants. Appl Environ Microbiol 2006 0.75
139 Harmonizing policy on human genetic resources and benefit sharing. Nat Biotechnol 2012 0.75
140 Polymorphism profile of nine short tandem repeat Loci in the Han chinese. Genomics Proteomics Bioinformatics 2003 0.75
141 Genome organization of the SARS-CoV. Genomics Proteomics Bioinformatics 2003 0.75
142 Preparing a re-sequencing DNA library of 2 cancer candidate genes using the ligation-by-amplification protocol by two PCR reactions. Sci China C Life Sci 2009 0.75
143 Digging more missing proteins using an enrichment approach with ProteoMiner™. J Proteome Res 2017 0.75
144 Erratum to: Genome sequence of a rice pest, the white-backed planthopper (Sogatella furcifera). Gigascience 2017 0.75
145 Identification of two herbal compounds with potential cholesterol-lowering activity. Biochem Pharmacol 2007 0.75
146 High hydrostatic pressure treatment of porcine oocytes induces parthenogenetic activation. Cell Reprogram 2010 0.75
147 Elevated NaCl concentration improves cryotolerance and developmental competence of porcine oocytes. Reprod Biomed Online 2009 0.75
148 DNA sequence comparative analysis of the 3pter-p26 region of human genome. Sci China C Life Sci 2005 0.75
149 Aseptic minimum volume vitrification technique for porcine parthenogenetically activated blastocyst. Cryo Letters 2011 0.75