Published in Autophagy on September 01, 2011
Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy (2012) 20.08
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy (2016) 7.05
Autophagic Degradation of the 26S Proteasome Is Mediated by the Dual ATG8/Ubiquitin Receptor RPN10 in Arabidopsis. Mol Cell (2015) 1.83
ATG8 family proteins act as scaffolds for assembly of the ULK complex: sequence requirements for LC3-interacting region (LIR) motifs. J Biol Chem (2012) 1.59
Aggrephagy: selective disposal of protein aggregates by macroautophagy. Int J Cell Biol (2012) 1.52
Degradation of the endoplasmic reticulum by autophagy during endoplasmic reticulum stress in Arabidopsis. Plant Cell (2012) 1.38
NBR1-mediated selective autophagy targets insoluble ubiquitinated protein aggregates in plant stress responses. PLoS Genet (2013) 1.21
Variations on a theme: plant autophagy in comparison to yeast and mammals. Protoplasma (2011) 1.18
Disrupting autophagy restores peroxisome function to an Arabidopsis lon2 mutant and reveals a role for the LON2 protease in peroxisomal matrix protein degradation. Plant Cell (2013) 1.16
A new type of compartment, defined by plant-specific Atg8-interacting proteins, is induced upon exposure of Arabidopsis plants to carbon starvation. Plant Cell (2012) 1.12
The expanding universe of ubiquitin and ubiquitin-like modifiers. Plant Physiol (2012) 1.02
Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis. Plant Cell (2013) 1.01
A BAR-domain protein SH3P2, which binds to phosphatidylinositol 3-phosphate and ATG8, regulates autophagosome formation in Arabidopsis. Plant Cell (2013) 1.01
Autophagy and metacaspase determine the mode of cell death in plants. J Cell Biol (2013) 0.99
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis. Plant Cell (2014) 0.98
Arabidopsis ATG8-INTERACTING PROTEIN1 is involved in autophagy-dependent vesicular trafficking of plastid proteins to the vacuole. Plant Cell (2014) 0.96
The deubiquitinating enzyme AMSH1 and the ESCRT-III subunit VPS2.1 are required for autophagic degradation in Arabidopsis. Plant Cell (2013) 0.94
Allyl isothiocyanate depletes glutathione and upregulates expression of glutathione S-transferases in Arabidopsis thaliana. Front Plant Sci (2015) 0.94
Role and regulation of autophagy in heat stress responses of tomato plants. Front Plant Sci (2014) 0.91
E3 ubiquitin ligase CHIP and NBR1-mediated selective autophagy protect additively against proteotoxicity in plant stress responses. PLoS Genet (2014) 0.91
An effector of the Irish potato famine pathogen antagonizes a host autophagy cargo receptor. Elife (2016) 0.89
Autophagy deficiency leads to accumulation of ubiquitinated proteins, ER stress, and cell death in Arabidopsis. Autophagy (2014) 0.89
The plant metacaspase AtMC1 in pathogen-triggered programmed cell death and aging: functional linkage with autophagy. Cell Death Differ (2014) 0.87
Genes for plant autophagy: functions and interactions. Mol Cells (2012) 0.85
Autophagic recycling plays a central role in maize nitrogen remobilization. Plant Cell (2015) 0.85
FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis. Plant Physiol (2015) 0.82
Degradation of organelles or specific organelle components via selective autophagy in plant cells. Int J Mol Sci (2014) 0.82
Selective autophagy of non-ubiquitylated targets in plants: looking for cognate receptor/adaptor proteins. Front Plant Sci (2014) 0.81
In vivo imaging and quantitative monitoring of autophagic flux in tobacco BY-2 cells. Plant Signal Behav (2012) 0.81
Microtubule-associated protein 1 light chain 3 interacts with and contributes to growth inhibiting effect of PML. PLoS One (2014) 0.80
Retromer contributes to immunity-associated cell death in Arabidopsis. Plant Cell (2015) 0.80
Selective autophagy receptor Joka2 co-localizes with cytoskeleton in plant cells. Plant Signal Behav (2014) 0.79
MAP1B Interaction with the FW Domain of the Autophagic Receptor Nbr1 Facilitates Its Association to the Microtubule Network. Int J Cell Biol (2012) 0.79
p62/Sequestosome-1, Autophagy-related Gene 8, and Autophagy in Drosophila Are Regulated by Nuclear Factor Erythroid 2-related Factor 2 (NRF2), Independent of Transcription Factor TFEB. J Biol Chem (2015) 0.79
Pexophagy and peroxisomal protein turnover in plants. Biochim Biophys Acta (2015) 0.79
Development of universal genetic markers based on single-copy orthologous (COSII) genes in Poaceae. Plant Cell Rep (2012) 0.78
Links between ER stress and autophagy in plants. Plant Signal Behav (2013) 0.78
Intronic T-DNA insertion in Arabidopsis NBR1 conditionally affects wild-type transcript level. Plant Signal Behav (2014) 0.77
METACASPASE9 modulates autophagy to confine cell death to the target cells during Arabidopsis vascular xylem differentiation. Biol Open (2016) 0.76
hfAIM: A reliable bioinformatics approach for in silico genome-wide identification of autophagy-associated Atg8-interacting motifs in various organisms. Autophagy (2016) 0.76
ATI1, a newly identified atg8-interacting protein, binds two different Atg8 homologs. Plant Signal Behav (2012) 0.76
Autophagy: An Important Biological Process That Protects Plants from Stressful Environments. Front Plant Sci (2017) 0.75
Selective autophagy limits cauliflower mosaic virus infection by NBR1-mediated targeting of viral capsid protein and particles. Proc Natl Acad Sci U S A (2017) 0.75
Cleaning House: Selective Autophagy of Organelles. Dev Cell (2017) 0.75
PEBP1, a RAF kinase inhibitory protein, negatively regulates starvation-induced autophagy by direct interaction with LC3. Autophagy (2016) 0.75
Disruption of the plant-specific CFS1 gene impairs autophagosome turnover and triggers EDS1-dependent cell death. Sci Rep (2017) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res (1994) 392.47
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J (1998) 97.93
LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing. EMBO J (2000) 41.48
Autophagy in the pathogenesis of disease. Cell (2008) 34.68
Autophagy fights disease through cellular self-digestion. Nature (2008) 33.83
p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy. J Biol Chem (2007) 21.73
Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes. Autophagy (2007) 20.92
p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death. J Cell Biol (2005) 18.23
GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci (2002) 16.83
Autophagy: process and function. Genes Dev (2007) 15.21
Autophagosome formation: core machinery and adaptations. Nat Cell Biol (2007) 13.59
Network organization of the human autophagy system. Nature (2010) 11.38
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science (2007) 9.79
Dynamics and diversity in autophagy mechanisms: lessons from yeast. Nat Rev Mol Cell Biol (2009) 9.32
LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation. J Cell Sci (2004) 9.20
The genome of the social amoeba Dictyostelium discoideum. Nature (2005) 9.18
Gateway-compatible vectors for plant functional genomics and proteomics. Plant J (2006) 8.95
Eaten alive: a history of macroautophagy. Nat Cell Biol (2010) 8.83
A role for ubiquitin in selective autophagy. Mol Cell (2009) 8.43
PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res (2005) 8.20
Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion. Cell (2007) 7.11
A role for NBR1 in autophagosomal degradation of ubiquitinated substrates. Mol Cell (2009) 6.88
Selective autophagy mediated by autophagic adapter proteins. Autophagy (2011) 6.88
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature (2008) 6.69
Nix is a selective autophagy receptor for mitochondrial clearance. EMBO Rep (2009) 5.52
Ubiquitin-binding domains. Biochem J (2006) 5.32
The TBK1 adaptor and autophagy receptor NDP52 restricts the proliferation of ubiquitin-coated bacteria. Nat Immunol (2009) 5.06
Structural basis for sorting mechanism of p62 in selective autophagy. J Biol Chem (2008) 4.20
Selective autophagy: ubiquitin-mediated recognition and beyond. Nat Cell Biol (2010) 3.74
LC3 and GATE-16/GABARAP subfamilies are both essential yet act differently in autophagosome biogenesis. EMBO J (2010) 3.68
Diverse polyubiquitin interaction properties of ubiquitin-associated domains. Nat Struct Mol Biol (2005) 3.27
p62, a phosphotyrosine-independent ligand of the SH2 domain of p56lck, belongs to a new class of ubiquitin-binding proteins. J Biol Chem (1996) 3.27
Structural basis of target recognition by Atg8/LC3 during selective autophagy. Genes Cells (2008) 3.23
Processing of ATG8s, ubiquitin-like proteins, and their deconjugation by ATG4s are essential for plant autophagy. Plant Cell (2004) 3.17
Interaction codes within the family of mammalian Phox and Bem1p domain-containing proteins. J Biol Chem (2003) 3.02
Atg8-family interacting motif crucial for selective autophagy. FEBS Lett (2010) 2.83
Autophagic nutrient recycling in Arabidopsis directed by the ATG8 and ATG12 conjugation pathways. Plant Physiol (2005) 2.56
The Cvt pathway as a model for selective autophagy. FEBS Lett (2010) 2.26
Autophagy in infection. Curr Opin Cell Biol (2010) 2.21
p62 Targeting to the autophagosome formation site requires self-oligomerization but not LC3 binding. J Cell Biol (2011) 2.16
NBR1 and p62 as cargo receptors for selective autophagy of ubiquitinated targets. Cell Cycle (2009) 2.12
Post-translational modifications of three members of the human MAP1LC3 family and detection of a novel type of modification for MAP1LC3B. J Biol Chem (2003) 2.06
Mobilization of rubisco and stroma-localized fluorescent proteins of chloroplasts to the vacuole by an ATG gene-dependent autophagic process. Plant Physiol (2008) 1.91
PB1 domain-mediated heterodimerization in NADPH oxidase and signaling complexes of atypical protein kinase C with Par6 and p62. Mol Cell (2003) 1.78
Ubiquitin recognition by the ubiquitin-associated domain of p62 involves a novel conformational switch. J Biol Chem (2007) 1.68
Protein aggregates are transported to vacuoles by a macroautophagic mechanism in nutrient-starved plant cells. Autophagy (2006) 1.36
Autophagy in protists. Autophagy (2011) 1.29
The autophagy-associated Atg8 gene family operates both under favourable growth conditions and under starvation stresses in Arabidopsis plants. J Exp Bot (2005) 1.27
Cloning, expression patterns, and chromosome localization of three human and two mouse homologues of GABA(A) receptor-associated protein. Genomics (2001) 1.17
An autophagy-associated Atg8 protein is involved in the responses of Arabidopsis seedlings to hormonal controls and abiotic stresses. J Exp Bot (2008) 1.12
Autophagy dysfunction and ubiquitin-positive protein aggregates in Dictyostelium cells lacking Vmp1. Autophagy (2010) 1.11
Interactions with LC3 and polyubiquitin chains link nbr1 to autophagic protein turnover. FEBS Lett (2009) 1.10
Capsaspora owczarzaki is an independent opisthokont lineage. Curr Biol (2004) 1.07
Autophagy in protists: Examples of secondary loss, lineage-specific innovations, and the conundrum of remodeling a single mitochondrion. Autophagy (2009) 1.01
Function and regulation of macroautophagy in plants. Biochim Biophys Acta (2009) 0.98
Chimeric fluorescent fusion proteins to monitor autophagy in plants. Methods Enzymol (2008) 0.80
p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy. J Biol Chem (2007) 21.73
Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes. Autophagy (2007) 20.92
Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy (2012) 20.08
p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death. J Cell Biol (2005) 18.23
A role for NBR1 in autophagosomal degradation of ubiquitinated substrates. Mol Cell (2009) 6.88
Selective autophagy mediated by autophagic adapter proteins. Autophagy (2011) 6.88
Monitoring autophagic degradation of p62/SQSTM1. Methods Enzymol (2009) 4.74
The adaptor protein p62/SQSTM1 targets invading bacteria to the autophagy pathway. J Immunol (2009) 4.31
p62/SQSTM1 is a target gene for transcription factor NRF2 and creates a positive feedback loop by inducing antioxidant response element-driven gene transcription. J Biol Chem (2010) 3.84
Delivery of cytosolic components by autophagic adaptor protein p62 endows autophagosomes with unique antimicrobial properties. Immunity (2010) 3.62
Interaction codes within the family of mammalian Phox and Bem1p domain-containing proteins. J Biol Chem (2003) 3.02
FYCO1 is a Rab7 effector that binds to LC3 and PI3P to mediate microtubule plus end-directed vesicle transport. J Cell Biol (2010) 2.57
The selective macroautophagic degradation of aggregated proteins requires the PI3P-binding protein Alfy. Mol Cell (2010) 2.12
NBR1 and p62 as cargo receptors for selective autophagy of ubiquitinated targets. Cell Cycle (2009) 2.12
p62/SQSTM1: a missing link between protein aggregates and the autophagy machinery. Autophagy (2006) 2.09
The LIR motif - crucial for selective autophagy. J Cell Sci (2013) 2.02
p62/SQSTM1 and ALFY interact to facilitate the formation of p62 bodies/ALIS and their degradation by autophagy. Autophagy (2010) 1.93
p62 and NDP52 proteins target intracytosolic Shigella and Listeria to different autophagy pathways. J Biol Chem (2011) 1.82
Selective autophagy in cancer development and therapy. Cancer Res (2010) 1.79
TBK-1 promotes autophagy-mediated antimicrobial defense by controlling autophagosome maturation. Immunity (2012) 1.75
Autophagic degradation of dBruce controls DNA fragmentation in nurse cells during late Drosophila melanogaster oogenesis. J Cell Biol (2010) 1.65
ATG8 family proteins act as scaffolds for assembly of the ULK complex: sequence requirements for LC3-interacting region (LIR) motifs. J Biol Chem (2012) 1.59
Aurothiomalate inhibits transformed growth by targeting the PB1 domain of protein kinase Ciota. J Biol Chem (2006) 1.55
Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii. BMC Plant Biol (2007) 1.55
Aggrephagy: selective disposal of protein aggregates by macroautophagy. Int J Cell Biol (2012) 1.52
A reporter cell system to monitor autophagy based on p62/SQSTM1. Autophagy (2010) 1.51
Nucleocytoplasmic shuttling of p62/SQSTM1 and its role in recruitment of nuclear polyubiquitinated proteins to promyelocytic leukemia bodies. J Biol Chem (2009) 1.49
Autophagy: links with the proteasome. Curr Opin Cell Biol (2009) 1.47
NBR1 cooperates with p62 in selective autophagy of ubiquitinated targets. Autophagy (2009) 1.46
Cell death during Drosophila melanogaster early oogenesis is mediated through autophagy. Autophagy (2009) 1.43
Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries. Plant J (2002) 1.39
Genome-wide siRNA screen reveals amino acid starvation-induced autophagy requires SCOC and WAC. EMBO J (2012) 1.31
Following autophagy step by step. BMC Biol (2011) 1.30
NBR1 acts as an autophagy receptor for peroxisomes. J Cell Sci (2012) 1.16
Data-directed top-down Fourier-transform mass spectrometry of a large integral membrane protein complex: photosystem II from Galdieria sulphuraria. Proteomics (2010) 1.04
Comparative survey of plastid and mitochondrial targeting properties of transcription factors in Arabidopsis and rice. Mol Genet Genomics (2007) 1.04
FYCO1: linking autophagosomes to microtubule plus end-directing molecular motors. Autophagy (2010) 1.03
The third helix of the homeodomain of paired class homeodomain proteins acts as a recognition helix both for DNA and protein interactions. Nucleic Acids Res (2005) 0.99
The ePHD protein SPBP interacts with TopBP1 and together they co-operate to stimulate Ets1-mediated transcription. Nucleic Acids Res (2007) 0.96
The MH1 domain of Smad3 interacts with Pax6 and represses autoregulation of the Pax6 P1 promoter. Nucleic Acids Res (2007) 0.95
Selective autophagy. Essays Biochem (2013) 0.95
DOR/Tp53inp2 and Tp53inp1 constitute a metazoan gene family encoding dual regulators of autophagy and transcription. PLoS One (2012) 0.94
Identification of two independent nucleosome-binding domains in the transcriptional co-activator SPBP. Biochem J (2012) 0.93
The proteomic analysis of endogenous FAT10 substrates identifies p62/SQSTM1 as a substrate of FAT10ylation. J Cell Sci (2012) 0.92
Dynamic subcellular localization of the mono-ADP-ribosyltransferase ARTD10 and interaction with the ubiquitin receptor p62. Cell Commun Signal (2012) 0.91
Autophagy as a trigger for cell death: autophagic degradation of inhibitor of apoptosis dBruce controls DNA fragmentation during late oogenesis in Drosophila. Autophagy (2010) 0.89
The rbcL genes of two Cuscuta species, C. gronovii and C. subinclusa, are transcribed by the nuclear-encoded plastid RNA polymerase (NEP). Planta (2004) 0.89
SQSTM1/p62 regulates the expression of junctional proteins through epithelial-mesenchymal transition factors. Cell Cycle (2015) 0.87
TRIM-mediated precision autophagy targets cytoplasmic regulators of innate immunity. J Cell Biol (2015) 0.86
Plastids of three Cuscuta species differing in plastid coding capacity have a common parasite-specific RNA composition. Planta (2003) 0.85
TRIM proteins regulate autophagy: TRIM5 is a selective autophagy receptor mediating HIV-1 restriction. Autophagy (2014) 0.85
Genetic analysis of the Photosystem I subunits from the red alga, Galdieria sulphuraria. Biochim Biophys Acta (2008) 0.85
Plastid Located WHIRLY1 Enhances the Responsiveness of Arabidopsis Seedlings Toward Abscisic Acid. Front Plant Sci (2012) 0.83
Pax6 localizes to chromatin-rich territories and displays a slow nuclear mobility altered by disease mutations. Cell Mol Life Sci (2010) 0.82
Pax6 represses androgen receptor-mediated transactivation by inhibiting recruitment of the coactivator SPBP. PLoS One (2011) 0.82
New insights into plastid nucleoid structure and functionality. Planta (2012) 0.82
The ins and outs of editing and splicing of plastid RNAs: lessons from parasitic plants. N Biotechnol (2010) 0.80
A phylogenetic study of SPBP and RAI1: evolutionary conservation of chromatin binding modules. PLoS One (2013) 0.80
HIV-1 viral infectivity factor interacts with microtubule-associated protein light chain 3 and inhibits autophagy. AIDS (2015) 0.78
Analysis of gene expression in amyloplasts of potato tubers. Planta (2007) 0.78
Selective autophagy goes exclusive. Nat Cell Biol (2014) 0.78
Green targeting predictor and ambiguous targeting predictor 2: the pitfalls of plant protein targeting prediction and of transient protein expression in heterologous systems. New Phytol (2013) 0.77
Transforming growth factor-β-inducible early response gene 1 is a novel substrate for atypical protein kinase Cs. Cell Mol Life Sci (2010) 0.76
Tocochromanol content and composition in different species of the parasitic flowering plant genus Cuscuta. J Plant Physiol (2005) 0.75
Gene symbol: APC. Hum Genet (2007) 0.75
Correction: TRIM17 contributes to autophagy of midbodies while actively sparing other targets from degradation. J Cell Sci (2017) 0.75