Published in Nature on September 14, 2011
Mouse genomic variation and its effect on phenotypes and gene regulation. Nature (2011) 10.66
Spatial organization of the mouse genome and its role in recurrent chromosomal translocations. Cell (2012) 4.02
The genome architecture of the Collaborative Cross mouse genetic reference population. Genetics (2012) 3.84
Passenger Mutations Confound Interpretation of All Genetically Modified Congenic Mice. Immunity (2015) 2.60
Endogenous viruses: insights into viral evolution and impact on host biology. Nat Rev Genet (2012) 2.52
Phenotypic impact of genomic structural variation: insights from and for human disease. Nat Rev Genet (2013) 1.98
Mouse endogenous retroviruses can trigger premature transcriptional termination at a distance. Genome Res (2012) 1.81
The genomic landscape shaped by selection on transposable elements across 18 mouse strains. Genome Biol (2012) 1.63
Copy number variation of individual cattle genomes using next-generation sequencing. Genome Res (2012) 1.62
An integrative probabilistic model for identification of structural variation in sequencing data. Genome Biol (2012) 1.56
Dynamics of gene silencing during X inactivation using allele-specific RNA-seq. Genome Biol (2015) 1.53
Sequencing and characterization of the FVB/NJ mouse genome. Genome Biol (2012) 1.48
Genetic analysis of hematological parameters in incipient lines of the collaborative cross. G3 (Bethesda) (2012) 1.35
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The fine-scale architecture of structural variants in 17 mouse genomes. Genome Biol (2012) 1.24
Mouse Phenome Database (MPD). Nucleic Acids Res (2011) 1.14
High-precision genetic mapping of behavioral traits in the diversity outbred mouse population. Genes Brain Behav (2013) 1.12
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Next-generation sequencing of experimental mouse strains. Mamm Genome (2012) 1.10
Deconstructing Mus gemischus: advances in understanding ancestry, structure, and variation in the genome of the laboratory mouse. Mamm Genome (2012) 1.08
Dynamic landscape and regulation of RNA editing in mammals. Nature (2017) 1.06
Modifier genes and the plasticity of genetic networks in mice. PLoS Genet (2012) 1.05
Epigenetic control of alternative mRNA processing at the imprinted Herc3/Nap1l5 locus. Nucleic Acids Res (2012) 1.04
Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array. BMC Genomics (2012) 1.04
Mapping genetic contributions to cardiac pathology induced by Beta-adrenergic stimulation in mice. Circ Cardiovasc Genet (2014) 1.03
SMaSH: a benchmarking toolkit for human genome variant calling. Bioinformatics (2014) 1.02
Improving detection of copy-number variation by simultaneous bias correction and read-depth segmentation. Nucleic Acids Res (2012) 0.98
Endogenous retroviruses and the development of cancer. J Immunol (2014) 0.97
High-resolution sex-specific linkage maps of the mouse reveal polarized distribution of crossovers in male germline. Genetics (2014) 0.97
Emerging genetics of COPD. EMBO Mol Med (2012) 0.96
Mismatch repair genes Mlh1 and Mlh3 modify CAG instability in Huntington's disease mice: genome-wide and candidate approaches. PLoS Genet (2013) 0.95
Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity. Environ Health Perspect (2014) 0.94
A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2. PLoS Genet (2015) 0.93
Chromosome substitution strains: gene discovery, functional analysis, and systems studies. Mamm Genome (2012) 0.93
Xenomic networks variability and adaptation traits in wood decaying fungi. Microb Biotechnol (2013) 0.93
Genome-wide association for fear conditioning in an advanced intercross mouse line. Behav Genet (2012) 0.93
Copy number variation in the cattle genome. Funct Integr Genomics (2012) 0.92
Creating reference gene annotation for the mouse C57BL6/J genome assembly. Mamm Genome (2015) 0.91
Genome-wide association for methamphetamine sensitivity in an advanced intercross mouse line. Genes Brain Behav (2011) 0.91
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The blessings and curses of C57BL/6 substrains in mouse genetic studies. Ann N Y Acad Sci (2011) 0.90
Genome-Wide Detection of Gene Coexpression Domains Showing Linkage to Regions Enriched with Polymorphic Retrotransposons in Recombinant Inbred Mouse Strains. G3 (Bethesda) (2013) 0.90
High-fat feeding rapidly induces obesity and lipid derangements in C57BL/6N mice. Mamm Genome (2013) 0.90
The genetic architecture of the genome-wide transcriptional response to ER stress in the mouse. PLoS Genet (2015) 0.89
fourSig: a method for determining chromosomal interactions in 4C-Seq data. Nucleic Acids Res (2014) 0.89
Causes and consequences of chromatin variation between inbred mice. PLoS Genet (2013) 0.89
The Mouse Genomes Project: a repository of inbred laboratory mouse strain genomes. Mamm Genome (2015) 0.89
Lactation and neonatal nutrition: defining and refining the critical questions. J Mammary Gland Biol Neoplasia (2012) 0.89
Cardiac-specific inducible and conditional gene targeting in mice. Circ Res (2012) 0.88
Genetic basis of transcriptome differences between the founder strains of the rat HXB/BXH recombinant inbred panel. Genome Biol (2012) 0.88
Identification of structural variation in mouse genomes. Front Genet (2014) 0.88
Genomic variation in the vomeronasal receptor gene repertoires of inbred mice. BMC Genomics (2012) 0.87
Genetic-genomic replication to identify candidate mouse atherosclerosis modifier genes. J Am Heart Assoc (2013) 0.87
Genome-wide association of multiple complex traits in outbred mice by ultra-low-coverage sequencing. Nat Genet (2016) 0.87
Genetic regulation of Zfp30, CXCL1, and neutrophilic inflammation in murine lung. Genetics (2014) 0.87
Whole-genome sequences of DA and F344 rats with different susceptibilities to arthritis, autoimmunity, inflammation and cancer. Genetics (2013) 0.87
QTL analysis of dietary obesity in C57BL/6byj X 129P3/J F2 mice: diet- and sex-dependent effects. PLoS One (2013) 0.86
Permissive and restricted virus infection of murine embryonic stem cells. J Gen Virol (2012) 0.86
Association studies in outbred mice in a new era of full-genome sequencing. Mamm Genome (2012) 0.86
Diversity outbred: a new generation of mouse model. Environ Health Perspect (2015) 0.86
Trace Amine-Associated Receptor 1 Regulation of Methamphetamine Intake and Related Traits. Neuropsychopharmacology (2015) 0.85
Genome-wide patterns of copy number variation in the diversified chicken genomes using next-generation sequencing. BMC Genomics (2014) 0.85
Natural genetic variation of integrin alpha L (Itgal) modulates ischemic brain injury in stroke. PLoS Genet (2013) 0.84
Integrative genetic analysis of allergic inflammation in the murine lung. Am J Respir Cell Mol Biol (2014) 0.84
Genetic architecture of skewed X inactivation in the laboratory mouse. PLoS Genet (2013) 0.84
Genome-wide and parental allele-specific analysis of CTCF and cohesin DNA binding in mouse brain reveals a tissue-specific binding pattern and an association with imprinted differentially methylated regions. Genome Res (2013) 0.84
Copy number variants and selective sweeps in natural populations of the house mouse (Mus musculus domesticus). Front Genet (2014) 0.84
Going forward with genetics: recent technological advances and forward genetics in mice. Am J Pathol (2013) 0.83
Genetic Architectures of Quantitative Variation in RNA Editing Pathways. Genetics (2015) 0.83
Copy number variations of MICAL-L2 shaping gene expression contribute to different phenotypes of cattle. Mamm Genome (2013) 0.83
Rapid identification of major-effect genes using the collaborative cross. Genetics (2014) 0.83
Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber. Plant Cell (2015) 0.83
Structural variation-associated expression changes are paralleled by chromatin architecture modifications. PLoS One (2013) 0.82
Allele-specific copy-number discovery from whole-genome and whole-exome sequencing. Nucleic Acids Res (2015) 0.82
Using whole-genome sequences of the LG/J and SM/J inbred mouse strains to prioritize quantitative trait genes and nucleotides. BMC Genomics (2015) 0.81
Identification of a QTL in Mus musculus for alcohol preference, withdrawal, and Ap3m2 expression using integrative functional genomics and precision genetics. Genetics (2014) 0.81
A large QTL for fear and anxiety mapped using an F2 cross can be dissected into multiple smaller QTLs. Genes Brain Behav (2013) 0.81
Hnrnph1 Is A Quantitative Trait Gene for Methamphetamine Sensitivity. PLoS Genet (2015) 0.81
An interval of the obesity QTL Nob3.38 within a QTL hotspot on chromosome 1 modulates behavioral phenotypes. PLoS One (2013) 0.81
High-resolution genetic mapping in the diversity outbred mouse population identifies Apobec1 as a candidate gene for atherosclerosis. G3 (Bethesda) (2014) 0.80
Fine mapping and candidate gene search of quantitative trait loci for growth and obesity using mouse intersubspecific subcongenic intercrosses and exome sequencing. PLoS One (2014) 0.80
Genomic copy number variation in Mus musculus. BMC Genomics (2015) 0.79
A locus on mouse Ch10 influences susceptibility to limbic seizure severity: fine mapping and in silico candidate gene analysis. Genes Brain Behav (2014) 0.79
Phenotypic instability between the near isogenic substrains BALB/cJ and BALB/cByJ. Mamm Genome (2014) 0.79
Functional genomic assessment of phosgene-induced acute lung injury in mice. Am J Respir Cell Mol Biol (2013) 0.79
Evidence for local regulatory control of escape from imprinted X chromosome inactivation. Genetics (2014) 0.79
Nxf1 natural variant E610G is a semi-dominant suppressor of IAP-induced RNA processing defects. PLoS Genet (2015) 0.79
Enhancement of microhomology-mediated genomic rearrangements by transient loss of mouse Bloom syndrome helicase. Genome Res (2013) 0.79
Comparative Analysis of CNV Calling Algorithms: Literature Survey and a Case Study Using Bovine High-Density SNP Data. Microarrays (Basel) (2013) 0.79
Plethysmography Phenotype QTL in Mice Before and After Allergen Sensitization and Challenge. G3 (Bethesda) (2016) 0.78
Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits. Genetics (2017) 0.78
Deleted copy number variation of Hanwoo and Holstein using next generation sequencing at the population level. BMC Genomics (2014) 0.78
Modeling the neurovascular niche: unbiased transcriptome analysis of the murine subventricular zone in response to hypoxic insult. PLoS One (2013) 0.78
Development of SNP markers for C57BL/6N-derived mouse inbred strains. Exp Anim (2014) 0.78
Structural evolution of CatSper1 in rodents is influenced by sperm competition, with effects on sperm swimming velocity. BMC Evol Biol (2014) 0.77
Identification of microRNAs associated with allergic airway disease using a genetically diverse mouse population. BMC Genomics (2015) 0.77
PAV markers in Sorghum bicolour: genome pattern, affected genes and pathways, and genetic linkage map construction. Theor Appl Genet (2015) 0.77
Copy number variation of a gene cluster encoding endopolygalacturonase mediates flesh texture and stone adhesion in peach. J Exp Bot (2016) 0.77
Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations. Genome Biol (2016) 0.77
Severe ocular phenotypes in Rbp4-deficient mice in the C57BL/6 genetic background. Lab Invest (2016) 0.77
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Origins and functional impact of copy number variation in the human genome. Nature (2009) 23.63
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat Methods (2009) 18.41
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics (2009) 15.08
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Copy number variation in human health, disease, and evolution. Annu Rev Genomics Hum Genet (2009) 7.64
Positional cloning of the mouse retrovirus restriction gene Fv1. Nature (1996) 7.01
A microhomology-mediated break-induced replication model for the origin of human copy number variation. PLoS Genet (2009) 6.39
Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome. Genome Res (2010) 4.22
The DNA replication FoSTeS/MMBIR mechanism can generate genomic, genic and exonic complex rearrangements in humans. Nat Genet (2009) 3.81
Yeast Mre11 and Rad1 proteins define a Ku-independent mechanism to repair double-strand breaks lacking overlapping end sequences. Mol Cell Biol (2003) 3.32
Segmental copy number variation shapes tissue transcriptomes. Nat Genet (2009) 2.95
LookSeq: a browser-based viewer for deep sequencing data. Genome Res (2009) 2.70
Skint1, the prototype of a newly identified immunoglobulin superfamily gene cluster, positively selects epidermal gammadelta T cells. Nat Genet (2008) 2.31
Using progenitor strain information to identify quantitative trait nucleotides in outbred mice. Genetics (2005) 1.89
The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells. Nat Genet (2009) 1.89
High resolution mapping of expression QTLs in heterogeneous stock mice in multiple tissues. Genome Res (2009) 1.83
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Copy number variant detection in inbred strains from short read sequence data. Bioinformatics (2009) 1.45
Mutations in sterol O-acyltransferase 1 (Soat1) result in hair interior defects in AKR/J mice. J Invest Dermatol (2010) 1.15
An expanded clade of rodent Trim5 genes. Virology (2009) 1.10
Haplotypes at the Tas2r locus on distal chromosome 6 vary with quinine taste sensitivity in inbred mice. BMC Genet (2005) 1.08
Elusive copy number variation in the mouse genome. PLoS One (2010) 1.03
Defensin-related peptide 1 (Defr1) is allelic to Defb8 and chemoattracts immature DC and CD4+ T cells independently of CCR6. Eur J Immunol (2009) 0.93
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Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature (2005) 23.04
Missing heritability and strategies for finding the underlying causes of complex disease. Nat Rev Genet (2010) 14.81
Power failure: why small sample size undermines the reliability of neuroscience. Nat Rev Neurosci (2013) 13.37
Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma. Nature (2011) 13.30
Mouse genomic variation and its effect on phenotypes and gene regulation. Nature (2011) 10.66
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Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res (2010) 9.55
The Collaborative Cross, a community resource for the genetic analysis of complex traits. Nat Genet (2004) 9.37
Copy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans. Nature (2006) 9.30
Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes. Nature (2012) 8.31
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature (2007) 7.91
The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus. Cell (2009) 7.88
A first-generation linkage disequilibrium map of human chromosome 22. Nature (2002) 7.03
Progress and prospects in rat genetics: a community view. Nat Genet (2008) 6.01
53BP1 loss rescues BRCA1 deficiency and is associated with triple-negative and BRCA-mutated breast cancers. Nat Struct Mol Biol (2010) 5.59
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Lineage-specific biology revealed by a finished genome assembly of the mouse. PLoS Biol (2009) 5.45
In vivo identification of tumor- suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma. Cell (2011) 5.19
Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature (2011) 5.13
A functional genetic link between distinct developmental language disorders. N Engl J Med (2008) 4.99
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IFITM3 restricts the morbidity and mortality associated with influenza. Nature (2012) 4.66
A high-resolution single nucleotide polymorphism genetic map of the mouse genome. PLoS Biol (2006) 4.57
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A Multiparent Advanced Generation Inter-Cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genet (2009) 3.97
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Genetic dissection of a behavioral quantitative trait locus shows that Rgs2 modulates anxiety in mice. Nat Genet (2004) 3.83
Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2. Nature (2012) 3.83
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Accelerated evolution of the Prdm9 speciation gene across diverse metazoan taxa. PLoS Genet (2009) 3.60
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Genome-wide association identifies a common variant in the reelin gene that increases the risk of schizophrenia only in women. PLoS Genet (2008) 3.33
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Genetic analysis of complex traits in the emerging Collaborative Cross. Genome Res (2011) 3.25
Large-scale mutagenesis in p19(ARF)- and p53-deficient mice identifies cancer genes and their collaborative networks. Cell (2008) 3.25
The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma. Nature (2012) 3.23
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SNP and haplotype mapping for genetic analysis in the rat. Nat Genet (2008) 2.96
PARK2 deletions occur frequently in sporadic colorectal cancer and accelerate adenoma development in Apc mutant mice. Proc Natl Acad Sci U S A (2010) 2.91
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New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq. Mol Microbiol (2010) 2.76
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