PubRank

Kris Gevaert

Author PubWeight™ 189.04‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 PRIDE: the proteomics identifications database. Proteomics 2005 7.52
2 Human Proteinpedia enables sharing of human protein data. Nat Biotechnol 2008 4.21
3 Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans. Proc Natl Acad Sci U S A 2009 4.09
4 Morphological and biochemical characterization of a human liver in a uPA-SCID mouse chimera. Hepatology 2005 3.72
5 Improved visualization of protein consensus sequences by iceLogo. Nat Methods 2009 3.64
6 Large-scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonis. J Proteome Res 2007 3.30
7 Caspase-14 protects against epidermal UVB photodamage and water loss. Nat Cell Biol 2007 2.82
8 Targeted peptidecentric proteomics reveals caspase-7 as a substrate of the caspase-1 inflammasomes. Mol Cell Proteomics 2008 2.64
9 Listeria monocytogenes impairs SUMOylation for efficient infection. Nature 2010 2.57
10 LRRK2 controls an EndoA phosphorylation cycle in synaptic endocytosis. Neuron 2012 2.49
11 LNCipedia: a database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Res 2012 2.40
12 The miR-17-92 microRNA cluster regulates multiple components of the TGF-β pathway in neuroblastoma. Mol Cell 2010 2.38
13 Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis. Nat Methods 2005 2.33
14 Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster. PLoS Biol 2009 2.25
15 Protein N-terminal acetyltransferases: when the start matters. Trends Biochem Sci 2012 2.19
16 Analysis of protein processing by N-terminal proteomics reveals novel species-specific substrate determinants of granzyme B orthologs. Mol Cell Proteomics 2008 2.01
17 Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability. Cell 2009 1.96
18 Caspase-14 is required for filaggrin degradation to natural moisturizing factors in the skin. J Invest Dermatol 2011 1.93
19 Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC). Proteomics 2008 1.81
20 NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation. PLoS Genet 2011 1.57
21 Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering. Proteomics 2006 1.52
22 T-cell receptor-induced JNK activation requires proteolytic inactivation of CYLD by MALT1. EMBO J 2011 1.52
23 Redox proteomics of protein-bound methionine oxidation. Mol Cell Proteomics 2011 1.37
24 ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics. Proteomics 2010 1.36
25 Parkin interacts with Ambra1 to induce mitophagy. J Neurosci 2011 1.36
26 Listeria comet tails: the actin-based motility machinery at work. Trends Cell Biol 2008 1.35
27 Proteome-wide Identification of HtrA2/Omi Substrates. J Proteome Res 2007 1.34
28 Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events. Mol Cell Proteomics 2013 1.33
29 PINK1 loss-of-function mutations affect mitochondrial complex I activity via NdufA10 ubiquinone uncoupling. Science 2014 1.32
30 DBToolkit: processing protein databases for peptide-centric proteomics. Bioinformatics 2005 1.30
31 SitePredicting the cleavage of proteinase substrates. Trends Biochem Sci 2009 1.29
32 Proteome-derived peptide libraries allow detailed analysis of the substrate specificities of N(alpha)-acetyltransferases and point to hNaa10p as the post-translational actin N(alpha)-acetyltransferase. Mol Cell Proteomics 2011 1.27
33 Proteome-wide substrate analysis indicates substrate exclusion as a mechanism to generate caspase-7 versus caspase-3 specificity. Mol Cell Proteomics 2009 1.27
34 Selecting protein N-terminal peptides by combined fractional diagonal chromatography. Nat Protoc 2011 1.26
35 MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results. Proteomics 2007 1.25
36 Complementary positional proteomics for screening substrates of endo- and exoproteases. Nat Methods 2010 1.25
37 Comparative proteome analysis of Chlamydia trachomatis serovar A, D and L2. Proteomics 2002 1.25
38 Analysis of the gamma-secretase interactome and validation of its association with tetraspanin-enriched microdomains. Nat Cell Biol 2009 1.25
39 MS-driven protease substrate degradomics. Proteomics 2010 1.23
40 The transcriptional repressor Glis2 is a novel binding partner for p120 catenin. Mol Biol Cell 2007 1.18
41 Matrix metalloproteinase 13 modulates intestinal epithelial barrier integrity in inflammatory diseases by activating TNF. EMBO Mol Med 2013 1.17
42 Do we want our data raw? Including binary mass spectrometry data in public proteomics data repositories. Proteomics 2005 1.17
43 Characterization of a secreted Chlamydia protease. Cell Microbiol 2002 1.16
44 Global differential non-gel proteomics by quantitative and stable labeling of tryptic peptides with oxygen-18. J Proteome Res 2004 1.16
45 In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography. Mol Cell Proteomics 2009 1.16
46 The human platelet proteome mapped by peptide-centric proteomics: a functional protein profile. Proteomics 2005 1.15
47 N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB. Proc Natl Acad Sci U S A 2012 1.14
48 The neural cell adhesion molecules L1 and CHL1 are cleaved by BACE1 protease in vivo. J Biol Chem 2012 1.13
49 Rover: a tool to visualize and validate quantitative proteomics data from different sources. Proteomics 2010 1.13
50 The MAGUK protein MPP7 binds to the polarity protein hDlg1 and facilitates epithelial tight junction formation. Mol Biol Cell 2007 1.12
51 Small heat-shock protein HSPB1 mutants stabilize microtubules in Charcot-Marie-Tooth neuropathy. J Neurosci 2011 1.12
52 A quantitative proteomics design for systematic identification of protease cleavage events. Mol Cell Proteomics 2010 1.09
53 The chaperone-like protein HYPK acts together with NatA in cotranslational N-terminal acetylation and prevention of Huntingtin aggregation. Mol Cell Biol 2010 1.07
54 The expression, processing and localization of polymorphic membrane proteins in Chlamydia pneumoniae strain CWL029. BMC Microbiol 2002 1.06
55 cIAP1/2 are direct E3 ligases conjugating diverse types of ubiquitin chains to receptor interacting proteins kinases 1 to 4 (RIP1-4). PLoS One 2011 1.06
56 A review of COFRADIC techniques targeting protein N-terminal acetylation. BMC Proc 2009 1.06
57 Tumor necrosis factor-induced modulation of glyoxalase I activities through phosphorylation by PKA results in cell death and is accompanied by the formation of a specific methylglyoxal-derived AGE. Proc Natl Acad Sci U S A 2002 1.06
58 Peptizer, a tool for assessing false positive peptide identifications and manually validating selected results. Mol Cell Proteomics 2008 1.04
59 Thermo-msf-parser: an open source Java library to parse and visualize Thermo Proteome Discoverer msf files. J Proteome Res 2011 1.03
60 Identification and characterization of immunogenic proteins of mycoplasma genitalium. Clin Vaccine Immunol 2006 1.03
61 Protein alpha-N-acetylation studied by N-terminomics. FEBS J 2011 1.03
62 The human N-alpha-acetyltransferase 40 (hNaa40p/hNatD) is conserved from yeast and N-terminally acetylates histones H2A and H4. PLoS One 2011 1.02
63 Identification of Chlamydia trachomatis CT621, a protein delivered through the type III secretion system to the host cell cytoplasm and nucleus. FEMS Immunol Med Microbiol 2009 1.02
64 ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell 2014 1.01
65 Constitutively active UVR8 photoreceptor variant in Arabidopsis. Proc Natl Acad Sci U S A 2013 1.01
66 The deubiquitylase USP33 discriminates between RALB functions in autophagy and innate immune response. Nat Cell Biol 2013 1.00
67 A protein phosphatase 2A complex spatially controls plant cell division. Nat Commun 2013 0.98
68 The substrate specificity profile of human granzyme A. Biol Chem 2010 0.98
69 Cell_motility: a cross-platform, open source application for the study of cell motion paths. BMC Bioinformatics 2006 0.98
70 A complex interaction pattern of CIS and SOCS2 with the leptin receptor. J Cell Sci 2006 0.97
71 Abolition of stress-induced protein synthesis sensitizes leukemia cells to anthracycline-induced death. Blood 2008 0.95
72 Cells lacking β-actin are genetically reprogrammed and maintain conditional migratory capacity. Mol Cell Proteomics 2012 0.95
73 The Online Protein Processing Resource (TOPPR): a database and analysis platform for protein processing events. Nucleic Acids Res 2012 0.95
74 LRRK2 functions in synaptic vesicle endocytosis through a kinase-dependent mechanism. J Cell Sci 2015 0.95
75 Caspase substrates: easily caught in deep waters? Trends Biotechnol 2009 0.95
76 A comparison of the HUPO Brain Proteome Project pilot with other proteomics studies. Proteomics 2006 0.94
77 Bioinformatics analysis of a Saccharomyces cerevisiae N-terminal proteome provides evidence of alternative translation initiation and post-translational N-terminal acetylation. J Proteome Res 2011 0.93
78 Plant proteins under oxidative attack. Proteomics 2013 0.93
79 A nanobody targeting the F-actin capping protein CapG restrains breast cancer metastasis. Breast Cancer Res 2013 0.93
80 A COFRADIC protocol to study protein ubiquitination. J Proteome Res 2014 0.92
81 Degradomics reveals that cleavage specificity profiles of caspase-2 and effector caspases are alike. J Biol Chem 2012 0.92
82 Probing the efficiency of proteolytic events by positional proteomics. Mol Cell Proteomics 2010 0.91
83 Proteome-wide characterization of N-glycosylation events by diagonal chromatography. J Proteome Res 2006 0.90
84 N-terminal acetylation and other functions of Nα-acetyltransferases. Biol Chem 2012 0.90
85 Mapping proteolytic processing in the secretome of gastric cancer-associated myofibroblasts reveals activation of MMP-1, MMP-2, and MMP-3. J Proteome Res 2013 0.89
86 Proteome-derived peptide libraries to study the substrate specificity profiles of carboxypeptidases. Mol Cell Proteomics 2013 0.89
87 A comparison of MS2-based label-free quantitative proteomic techniques with regards to accuracy and precision. Proteomics 2011 0.89
88 Multiple isoforms of the tumor suppressor myopodin are simultaneously transcribed in cancer cells. Biochem Biophys Res Commun 2008 0.88
89 The actin propulsive machinery: the proteome of Listeria monocytogenes tails. Biochem Biophys Res Commun 2008 0.88
90 Structure of granzyme C reveals an unusual mechanism of protease autoinhibition. Proc Natl Acad Sci U S A 2009 0.88
91 The Arabidopsis metacaspase9 degradome. Plant Cell 2013 0.88
92 Improved tandem mass spectrometric characterization of 3-nitrotyrosine sites in peptides. Rapid Commun Mass Spectrom 2006 0.87
93 HyperISGylation of Old World monkey ISG15 in human cells. PLoS One 2008 0.86
94 A catalogue of putative HIV-1 protease host cell substrates. Biol Chem 2012 0.86
95 The calcium-binding protein p54/NEFA is a novel luminal resident of medial Golgi cisternae that traffics independently of mannosidase II. Eur J Cell Biol 2002 0.86
96 Proteomic and metabolomic responses to connexin43 silencing in primary hepatocyte cultures. Arch Toxicol 2012 0.85
97 Diversity in protein glycosylation among insect species. PLoS One 2011 0.85
98 Interaction of the tobacco lectin with histone proteins. Plant Physiol 2011 0.85
99 A new approach for mapping sialylated N-glycosites in serum proteomes. J Proteome Res 2007 0.85
100 A new functional, chemical proteomics technology to identify purine nucleotide binding sites in complex proteomes. J Proteome Res 2006 0.85
101 Disentanglement of protease substrate repertoires. Biol Chem 2008 0.85
102 Development of an enzyme-linked immunosorbent assay for detection of cellular and in vivo LRRK2 S935 phosphorylation. J Pharm Biomed Anal 2012 0.84
103 A novel strategy for the comprehensive analysis of the biomolecular composition of isolated plasma membranes. Mol Syst Biol 2011 0.84
104 Assessing a novel microfluidic interface for shotgun proteome analyses. J Sep Sci 2007 0.84
105 Human and mouse granzyme M display divergent and species-specific substrate specificities. Biochem J 2011 0.84
106 Natural substrates of plant proteases: how can protease degradomics extend our knowledge? Physiol Plant 2011 0.84
107 The proteome under translational control. Proteomics 2014 0.84
108 Compound A, a selective glucocorticoid receptor modulator, enhances heat shock protein Hsp70 gene promoter activation. PLoS One 2013 0.84
109 Angiotensin I-converting enzyme inhibitory activity of gelatin hydrolysates and identification of bioactive peptides. J Agric Food Chem 2010 0.84
110 Implementation and application of a versatile clustering tool for tandem mass spectrometry data. Proteomics 2007 0.84
111 Asn3, a reliable, robust, and universal lock mass for improved accuracy in LC-MS and LC-MS/MS. Anal Chem 2013 0.83
112 Combining quantitative proteomics data processing workflows for greater sensitivity. Nat Methods 2011 0.83
113 A case study on the comparison of different software tools for automated quantification of peptides. Methods Mol Biol 2011 0.83
114 Investigation of rifampicin resistance mechanisms in Brucella abortus using MS-driven comparative proteomics. J Proteome Res 2012 0.83
115 Analysis of proteins in Chlamydia trachomatis L2 outer membrane complex, COMC. FEMS Immunol Med Microbiol 2009 0.83
116 The proteome of the human neuroblastoma cell line SH-SY5Y: an enlarged proteome. Biochim Biophys Acta 2008 0.83
117 A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites. Proteomics 2014 0.82
118 Taximin, a conserved plant-specific peptide is involved in the modulation of plant-specialized metabolism. Plant Biotechnol J 2014 0.82
119 RIBAR and xRIBAR: Methods for reproducible relative MS/MS-based label-free protein quantification. J Proteome Res 2011 0.82
120 The tandem PDZ protein Syntenin interacts with the aminoacyl tRNA synthetase complex in a lysyl-tRNA synthetase-dependent manner. J Proteome Res 2008 0.82
121 An aspartyl protease inhibitor of Ostertagia ostertagi: molecular cloning, analysis of stage and tissue specific expression and vaccine trial. Mol Biochem Parasitol 2005 0.81
122 Proteomics methods to study methionine oxidation. Mass Spectrom Rev 2013 0.81
123 Who gets cut during cell death? Curr Opin Cell Biol 2010 0.81
124 Glycosylation signatures in Drosophila: fishing with lectins. J Proteome Res 2010 0.81
125 Vaccination with an Ostertagia ostertagi polyprotein allergen protects calves against homologous challenge infection. Infect Immun 2004 0.81
126 Identification of Serpinb6b as a species-specific mouse granzyme A inhibitor suggests functional divergence between human and mouse granzyme A. J Biol Chem 2014 0.81
127 Hybrid N-glycans on the host protective activation-associated secreted proteins of Ostertagia ostertagi and their importance in immunogenicity. Mol Biochem Parasitol 2008 0.80
128 Analysis of the translationally controlled tumour protein in the nematodes Ostertagia ostertagi and Caenorhabditis elegans suggests a pivotal role in egg production. Int J Parasitol 2009 0.80
129 Structural investigation of B-Raf paradox breaker and inducer inhibitors. J Med Chem 2015 0.79
130 Protein N-terminal acetyltransferases act as N-terminal propionyltransferases in vitro and in vivo. Mol Cell Proteomics 2012 0.79
131 Plant hormone signalling through the eye of the mass spectrometer. Proteomics 2015 0.79
132 m-Calpain activation in vitro does not require autolysis or subunit dissociation. Biochim Biophys Acta 2011 0.79
133 Identification by two-dimensional electrophoresis of a new adhesin expressed by a low-passaged strain of Mycoplasma bovis. Res Microbiol 2005 0.79
134 Improving the identification rate of endogenous peptides using electron transfer dissociation and collision-induced dissociation. J Proteome Res 2013 0.79
135 Contemporary positional proteomics strategies to study protein processing. Curr Opin Chem Biol 2013 0.79
136 Interaction of α-catulin with dystrobrevin contributes to integrity of dystrophin complex in muscle. J Biol Chem 2012 0.78
137 GalNAc/Gal-binding Rhizoctonia solani agglutinin has antiproliferative activity in Drosophila melanogaster S2 cells via MAPK and JAK/STAT signaling. PLoS One 2012 0.78
138 Membrane proteome of the green sulfur bacterium Chlorobium tepidum (syn. Chlorobaculum tepidum) analyzed by gel-based and gel-free methods. Photosynth Res 2010 0.78
139 A small heat shock protein of Ostertagia ostertagi: stage-specific expression, heat inducibility, and protection trial. J Parasitol 2006 0.78
140 Quantitative proteome profiling of C. burnetii under tetracycline stress conditions. PLoS One 2012 0.78
141 Combination of COFRADIC and high temperature-extended column length conventional liquid chromatography: a very efficient way to tackle complex protein samples, such as serum. J Sep Sci 2007 0.77
142 Holistic view on the extended substrate specificities of orthologous granzymes. J Proteome Res 2014 0.77
143 Unraveling the specificities of the different human methionine sulfoxide reductases. Proteomics 2014 0.77
144 Protein processing characterized by a gel-free proteomics approach. Methods Mol Biol 2008 0.77
145 High entomotoxicity and mechanism of the fungal GalNAc/Gal-specific Rhizoctonia solani lectin in pest insects. J Insect Physiol 2013 0.77
146 Proteolytic cleavage of the Chlamydia pneumoniae major outer membrane protein in the absence of Pmp10. Proteomics 2007 0.77
147 Proteome profiling of the green sulfur bacterium Chlorobaculum tepidum by N-terminal proteomics. Proteomics 2011 0.77
148 A stringent approach to improve the quality of nitrotyrosine peptide identifications. Proteomics 2011 0.77
149 The C-terminus of CIS defines its interaction pattern. Biochem J 2007 0.77
150 Activation of ADF/cofilin by phosphorylation-regulated Slingshot phosphatase is required for the meiotic spindle assembly in Xenopus laevis oocytes. Mol Biol Cell 2013 0.77
151 Identification of potentially involved proteins in levofloxacin resistance mechanisms in Coxiella burnetii. J Proteome Res 2010 0.77
152 How has urinary proteomics contributed to the discovery of early biomarkers of acute kidney injury? Expert Rev Proteomics 2014 0.77
153 Unraveling persistent host cell infection with Coxiella burnetii by quantitative proteomics. J Proteome Res 2011 0.76
154 Substrate specificities of the granzyme tryptases A and K. J Proteome Res 2014 0.76
155 SCX charge state selective separation of tryptic peptides combined with 2D-RP-HPLC allows for detailed proteome mapping. J Proteomics 2013 0.76
156 In-gel N-acetylation for the quantification of the degree of protein in vivo N-terminal acetylation. Methods Mol Biol 2013 0.76
157 Mass spectrometry-driven proteomics: an introduction. Methods Mol Biol 2011 0.75
158 Conservation of the extended substrate specificity profiles among homologous granzymes across species. Mol Cell Proteomics 2013 0.75
159 Importance of extended protease substrate recognition motifs in steering BNIP-2 cleavage by human and mouse granzymes B. BMC Biochem 2014 0.75
160 C-terminomics: Targeted analysis of natural and posttranslationally modified protein and peptide C-termini. Proteomics 2014 0.75
161 Study of the whole cell lysate of two Coxiella burnetii strains using N-terminomics. J Proteome Res 2012 0.75
162 The chlorosome of Chlorobaculum tepidum: size, mass and protein composition revealed by electron microscopy, dynamic light scattering and mass spectrometry-driven proteomics. Proteomics 2011 0.75
163 Integrated proteomic analysis reveals a substantial enrichment of protein trafficking processes in hippocampus tissue after hypoxic stress. J Proteome Res 2010 0.75
164 OMICS views on protein N-terminal biology. Proteomics 2015 0.75
165 How many spots with missing values can be tolerated in quantitative two-dimensional gel electrophoresis when applying univariate statistics? J Proteomics 2011 0.75
166 Preparation of Arabidopsis thaliana seedling proteomes for identifying metacaspase substrates by N-terminal COFRADIC. Methods Mol Biol 2014 0.75
167 A reproducibility-based evaluation procedure for quantifying the differences between MS/MS peak intensity normalization methods. Proteomics 2011 0.75
168 Correction to Structural Investigation of B-Raf Paradox Breaker and Inducer Inhibitors. J Med Chem 2016 0.75
169 Non-coding after all: Biases in proteomics data do not explain observed absence of lncRNA translation products. J Proteome Res 2017 0.75
170 Gold nanodome SERS platform for label-free detection of protease activity. Faraday Discuss 2017 0.75
171 HPLC-based quantification of in vitro N-terminal acetylation. Methods Mol Biol 2013 0.75