A platform for efficient genotyping in Musa using microsatellite markers.

PubWeight™: 0.90‹?›

🔗 View Article (PMC 3185971)

Published in AoB Plants on August 22, 2011

Authors

Pavla Christelová1, Miroslav Valárik, Eva Hřibová, Ines Van den Houwe, Stéphanie Channelière, Nicolas Roux, Jaroslav Doležel

Author Affiliations

1: Centre of the Region Haná for Biotechnological and Agricultural Research , Institute of Experimental Botany , Sokolovská 6, Olomouc CZ-77200 , Czech Republic.

Articles cited by this

TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci (1996) 56.57

Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci U S A (1973) 26.31

An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol (2000) 19.89

Microsatellite analysis of population structure in Canadian polar bears. Mol Ecol (1995) 17.81

PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics (2005) 15.95

A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One (2011) 15.19

Reliable genotyping of samples with very low DNA quantities using PCR. Nucleic Acids Res (1996) 5.73

Genotyping errors: causes, consequences and solutions. Nat Rev Genet (2005) 5.00

How to track and assess genotyping errors in population genetics studies. Mol Ecol (2004) 4.62

Development of a standard set of microsatellite reference alleles for identification of grape cultivars. Theor Appl Genet (2004) 1.52

Microsatellite DNA in peach (Prunus persica L. Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome (2000) 1.41

Development and assessment of Diversity Arrays Technology for high-throughput DNA analyses in Musa. Theor Appl Genet (2009) 1.31

A saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas. BMC Plant Biol (2010) 1.29

Construction and testing of a microsatellite database containing more than 500 tomato varieties. Theor Appl Genet (2002) 1.16

Construction and analysis of a microsatellite-based database of European wheat varieties. Theor Appl Genet (2002) 1.14

A tale of two genotypes: consistency between two high-throughput genotyping centers. Genome Res (2002) 1.14

The ITS1-5.8S-ITS2 sequence region in the Musaceae: structure, diversity and use in molecular phylogeny. PLoS One (2011) 1.12

Identification of cut rose (Rosa hybrida) and rootstock varieties using robust sequence tagged microsatellite site markers. Theor Appl Genet (2002) 1.11

PCR-RFLP of the ribosomal DNA internal transcribed spacers (ITS) provides markers for the A and B genomes in Musa L. Theor Appl Genet (2003) 1.11

Sequence tagged microsatellite site (STMS) markers in the Musaceae. Mol Ecol (1998) 1.10

Nuclear genome size and genomic distribution of ribosomal DNA in Musa and Ensete (Musaceae): taxonomic implications. Cytogenet Genome Res (2005) 1.08

A set of multiplex panels of microsatellite markers for rapid molecular characterization of rice accessions. BMC Plant Biol (2007) 1.06

Assessment of the validity of the sections in Musa (musaceae) using AFLP. Ann Bot (2002) 1.05

Diploid Musa acuminata genetic diversity assayed with sequence-tagged microsatellite sites. Electrophoresis (1998) 0.99

Genetic Diversity in Musa acuminata Colla and Musa balbisiana Colla and some of their natural hybrids using AFLP Markers. Theor Appl Genet (2002) 0.98

Identification of RAPD markers linked to A and B genome sequences in Musa L. Genome (2000) 0.95

Amplified fragment length polymorphism fingerprinting of 16 banana cultivars (Musa cvs.). Mol Phylogenet Evol (2000) 0.94

Restriction fragment length polymorphism (RFLP)-based phylogenetic analysis of Musa. Theor Appl Genet (1992) 0.92

Molecular phylogeny and systematics of the banana family (Musaceae) inferred from multiple nuclear and chloroplast DNA fragments, with a special reference to the genus Musa. Mol Phylogenet Evol (2010) 0.91

Rapid detection of aneuploidy in Musa using flow cytometry. Plant Cell Rep (2002) 0.87

The identification of duplicate accessions within a rice germplasm collection using RAPD analysis. Theor Appl Genet (1995) 0.87

The use of genetic markers for detecting DNA polymorphism, genotype identification and phylogenetic relationships among banana cultivars. Mol Phylogenet Evol (2008) 0.77

Articles by these authors

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature (2012) 3.53

Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content. Plant J (2011) 1.60

The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nat Genet (2013) 1.38

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences. Proc Natl Acad Sci U S A (2012) 1.37

Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat. Plant J (2004) 1.31

Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. Plant J (2013) 1.26

Plant centromeric retrotransposons: a structural and cytogenetic perspective. Mob DNA (2011) 1.21

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS. Plant Biotechnol J (2011) 1.21

The ITS1-5.8S-ITS2 sequence region in the Musaceae: structure, diversity and use in molecular phylogeny. PLoS One (2011) 1.12

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation. Theor Appl Genet (2011) 1.09

First survey of the wheat chromosome 5A composition through a next generation sequencing approach. PLoS One (2011) 1.09

Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing. BMC Plant Biol (2010) 1.08

Control of flowering time and spike development in cereals: the earliness per se Eps-1 region in wheat, rice, and Brachypodium. Funct Integr Genomics (2009) 1.05

The bromodomain protein GTE6 controls leaf development in Arabidopsis by histone acetylation at ASYMMETRIC LEAVES1. Genes Dev (2005) 1.04

Biosynthesis of the major scent components 3,5-dimethoxytoluene and 1,3,5-trimethoxybenzene by novel rose O-methyltransferases. FEBS Lett (2002) 1.03

BAC libraries from wheat chromosome 7D: efficient tool for positional cloning of aphid resistance genes. J Biomed Biotechnol (2010) 1.00

SNP Discovery for mapping alien introgressions in wheat. BMC Genomics (2014) 0.96

Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots. Plant Mol Biol (2014) 0.94

Functional features of a single chromosome arm in wheat (1AL) determined from its structure. Funct Integr Genomics (2011) 0.93

A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat. Genome Biol (2013) 0.93

Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat. BMC Plant Biol (2012) 0.92

A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnol J (2014) 0.92

Construction of a subgenomic BAC library specific for chromosomes 1D, 4D and 6D of hexaploid wheat. Theor Appl Genet (2004) 0.92

Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat. BMC Plant Biol (2012) 0.91

A physical map of the short arm of wheat chromosome 1A. PLoS One (2013) 0.91

Totally normothermic aortic arch replacement without circulatory arrest. Ann Thorac Surg (2003) 0.91

Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A. Plant J (2014) 0.91

The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution. Genome Biol (2013) 0.91

A multi gene sequence-based phylogeny of the Musaceae (banana) family. BMC Evol Biol (2011) 0.91

A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome. Funct Integr Genomics (2011) 0.90

Flow cytometric chromosome sorting from diploid progenitors of bread wheat, T. urartu, Ae. speltoides and Ae. tauschii. Theor Appl Genet (2014) 0.90

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications. BMC Genomics (2014) 0.90

Next-generation survey sequencing and the molecular organization of wheat chromosome 6B. DNA Res (2013) 0.89

Integration of genetic and physical maps of the chickpea (Cicer arietinum L.) genome using flow-sorted chromosomes. Chromosome Res (2011) 0.89

Subgenomic analysis of microRNAs in polyploid wheat. Funct Integr Genomics (2012) 0.88

Syntenic relationships between the U and M genomes of Aegilops, wheat and the model species Brachypodium and rice as revealed by COS markers. PLoS One (2013) 0.88

Chromosome isolation by flow sorting in Aegilops umbellulata and Ae. comosa and their allotetraploid hybrids Ae. biuncialis and Ae. geniculata. PLoS One (2011) 0.87

Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnol J (2013) 0.86

Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A. PLoS One (2013) 0.86

Sequence composition and gene content of the short arm of rye (Secale cereale) chromosome 1. PLoS One (2012) 0.84

Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno. Plant Biotechnol J (2012) 0.84

Molecular analysis and genomic organization of major DNA satellites in banana (Musa spp.). PLoS One (2013) 0.84

Genetic mapping of DArT markers in the Festuca-Lolium complex and their use in freezing tolerance association analysis. Theor Appl Genet (2011) 0.83

Genomic constitution of Festuca × Lolium hybrids revealed by the DArTFest array. Theor Appl Genet (2010) 0.82

Molecular mapping of stripe rust resistance gene Yr51 in chromosome 4AL of wheat. Theor Appl Genet (2013) 0.81

Dissection of barley chromosomes 1H and 6H by the gametocidal system. Genes Genet Syst (2014) 0.80

Proteomic analysis of barley cell nuclei purified by flow sorting. Cytogenet Genome Res (2014) 0.80

A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus. Funct Integr Genomics (2013) 0.80

Flow sorting and sequencing meadow fescue chromosome 4F. Plant Physiol (2013) 0.79

Genomic diversity in two related plant species with and without sex chromosomes--Silene latifolia and S. vulgaris. PLoS One (2012) 0.79

Variation in genome composition of blue-aleurone wheat. Theor Appl Genet (2014) 0.78

Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat. BMC Genomics (2013) 0.78

Flow cytometric chromosome sorting in plants: the next generation. Methods (2012) 0.78

Major haplotype divergence including multiple germin-like protein genes, at the wheat Sr2 adult plant stem rust resistance locus. BMC Plant Biol (2014) 0.78

Fine mapping, phenotypic characterization and validation of non-race-specific resistance to powdery mildew in a wheat-Triticum militinae introgression line. Theor Appl Genet (2012) 0.77

Performance parameters for detection in low-flux coherent images. Opt Lett (2003) 0.76

Development of COS-SNP and HRM markers for high-throughput and reliable haplotype-based detection of Lr14a in durum wheat (Triticum durum Desf.). Theor Appl Genet (2013) 0.76

Molecular Cytogenetic Mapping of Satellite DNA Sequences in Aegilops geniculata and Wheat. Cytogenet Genome Res (2016) 0.76

Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene. Theor Appl Genet (2015) 0.75

Estimation of the degree of polarization in active coherent imagery by using the natural representation. J Opt Soc Am A Opt Image Sci Vis (2004) 0.75

Open repair of extensive thoracoabdominal and thoracic aneurysm: a preliminary single-center experience with femorofemoral distal aortic perfusion with oxygenator and without cerebrospinal fluid drainage. Ann Vasc Surg (2011) 0.75

Miniature and cooled hyperspectral camera for outdoor surveillance applications in the mid-infrared. Opt Lett (2016) 0.75

Repetitive DNA: A Versatile Tool for Karyotyping in Festuca pratensis Huds. Cytogenet Genome Res (2017) 0.75

Physical Map of the Short Arm of Bread Wheat Chromosome 3D. Plant Genome (2017) 0.75

Hyperexpansion of wheat chromosomes sorted by flow cytometry. Genes Genet Syst (2014) 0.75

Corrigendum: Differential root transcriptomics in a polyploid non-model crop: the importance of respiration during osmotic stress. Sci Rep (2016) 0.75

Stability of Genome Composition and Recombination between Homoeologous Chromosomes in Festulolium (Festuca × Lolium) Cultivars. Cytogenet Genome Res (2017) 0.75

Orthology Guided Transcriptome Assembly of Italian Ryegrass and Meadow Fescue for Single-Nucleotide Polymorphism Discovery. Plant Genome (2016) 0.75

Some practical issues in anomaly detection and exploitation of regions of interest in hyperspectral images. Appl Opt (2006) 0.75

Influence of band selection and target estimation error on the performance of the matched filter in hyperspectral imaging. Appl Opt (2011) 0.75

Estimation of the degree of polarization of coherent light in the presence of uniform and nonuniform illumination. J Opt Soc Am A Opt Image Sci Vis (2006) 0.75

Aortic aneurysm surgery: long-term patency of the reimplanted intercostal arteries. Ann Vasc Surg (2012) 0.75