Published in Nucleic Acids Res on May 08, 2012
BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions. Nucleic Acids Res (2012) 2.56
Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics (2013) 2.43
I-TASSER server: new development for protein structure and function predictions. Nucleic Acids Res (2015) 1.59
Real-time visualization of assembling of a sphingomyelin-specific toxin on planar lipid membranes. Biophys J (2013) 1.12
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Constitutive phosphorylation of cardiac myosin regulatory light chain prevents development of hypertrophic cardiomyopathy in mice. Proc Natl Acad Sci U S A (2015) 0.98
Histatin 5 binds to Porphyromonas gingivalis hemagglutinin B (HagB) and alters HagB-induced chemokine responses. Sci Rep (2014) 0.96
Dipeptidyl peptidase IV is a human and murine neutrophil chemorepellent. J Immunol (2013) 0.93
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Innovations in proteomic profiling of cancers: alternative splice variants as a new class of cancer biomarker candidates and bridging of proteomics with structural biology. J Proteomics (2013) 0.90
The nucleic acid-binding domain and translational repression activity of a Xenopus terminal uridylyl transferase. J Biol Chem (2013) 0.88
The FunFOLD2 server for the prediction of protein-ligand interactions. Nucleic Acids Res (2013) 0.88
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Shedding some light over the floral metabolism by arum lily (Zantedeschia aethiopica) spathe de novo transcriptome assembly. PLoS One (2014) 0.85
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Regulation of a novel isoform of Receptor Expression Enhancing Protein REEP6 in rod photoreceptors by bZIP transcription factor NRL. Hum Mol Genet (2014) 0.85
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Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila. Mol Syst Biol (2016) 0.85
COOH-terminal collagen Q (COLQ) mutants causing human deficiency of endplate acetylcholinesterase impair the interaction of ColQ with proteins of the basal lamina. Hum Genet (2013) 0.84
The chaperone protein SmgGDS interacts with small GTPases entering the prenylation pathway by recognizing the last amino acid in the CAAX motif. J Biol Chem (2014) 0.83
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The GLRA1 missense mutation W170S associates lack of Zn2+ potentiation with human hyperekplexia. J Neurosci (2013) 0.83
Phosphorylation events in the multiple gene regulator of group A Streptococcus significantly influence global gene expression and virulence. Infect Immun (2015) 0.83
Protein Structure and Function Prediction Using I-TASSER. Curr Protoc Bioinformatics (2015) 0.82
Structural and sequencing analysis of local target DNA recognition by MLV integrase. Nucleic Acids Res (2015) 0.82
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Complete Genome Sequences of Two Porcine Circovirus Type 2 Field Isolates Bearing an Unusual Sequence Duplication in the rep Gene. Genome Announc (2014) 0.81
A small shared epitope-mimetic compound potently accelerates osteoclast-mediated bone damage in autoimmune arthritis. J Immunol (2013) 0.81
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Binding of a pleurotolysin ortholog from Pleurotus eryngii to sphingomyelin and cholesterol-rich membrane domains. J Lipid Res (2013) 0.80
The evolution and diversity of a low complexity vaccine candidate, merozoite surface protein 9 (MSP-9), in Plasmodium vivax and closely related species. Infect Genet Evol (2013) 0.80
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Proteins and Their Interacting Partners: An Introduction to Protein-Ligand Binding Site Prediction Methods. Int J Mol Sci (2015) 0.80
Novel familial dilated cardiomyopathy mutation in MYL2 affects the structure and function of myosin regulatory light chain. FEBS J (2015) 0.80
FK506-binding protein 12 modulates μ-opioid receptor phosphorylation and protein kinase C(ε)-dependent signaling by its direct interaction with the receptor. Mol Pharmacol (2013) 0.80
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Structural Bioinformatics Inspection of neXtProt PE5 Proteins in the Human Proteome. J Proteome Res (2015) 0.80
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Identification of the nicotinamide mononucleotide adenylyltransferase of Trypanosoma cruzi. Mem Inst Oswaldo Cruz (2015) 0.79
Fast forward genetics to identify mutations causing a high light tolerant phenotype in Chlamydomonas reinhardtii by whole-genome-sequencing. BMC Genomics (2015) 0.79
The N terminus of SKAP55 enables T cell adhesion to TCR and integrin ligands via distinct mechanisms. J Cell Biol (2013) 0.78
Residues in conserved loops of intramembrane metalloprotease SpoIVFB interact with residues near the cleavage site in pro-σK. J Bacteriol (2013) 0.78
Cooperative control between AtRGS1 and AtHXK1 in a WD40-repeat protein pathway in Arabidopsis thaliana. Front Plant Sci (2015) 0.78
A distant homologue of the FlgT protein interacts with MotB and FliL and is essential for flagellar rotation in Rhodobacter sphaeroides. J Bacteriol (2013) 0.78
Molecular modeling of the binding modes of the iron-sulfur protein to the Jac1 co-chaperone from Saccharomyces cerevisiae by all-atom and coarse-grained approaches. Proteins (2015) 0.78
Ligand-target prediction by structural network biology using nAnnoLyze. PLoS Comput Biol (2015) 0.78
Formation of the Δ(18,19) Double Bond and Bis(spiroacetal) in Salinomycin Is Atypically Catalyzed by SlnM, a Methyltransferase-like Enzyme. Angew Chem Int Ed Engl (2015) 0.78
Structure-based function analysis of putative conserved proteins with isomerase activity from Haemophilus influenzae. 3 Biotech (2014) 0.77
DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe. BMC Bioinformatics (2015) 0.77
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Engineered high-affinity nanobodies recognizing staphylococcal Protein A and suitable for native isolation of protein complexes. Anal Biochem (2015) 0.77
Consensus computational network analysis for identifying candidate outer membrane proteins from Borrelia spirochetes. BMC Microbiol (2016) 0.77
Improving accuracy of protein contact prediction using balanced network deconvolution. Proteins (2015) 0.77
Analysis of self-assembly of S-layer protein slp-B53 from Lysinibacillus sphaericus. Eur Biophys J (2016) 0.77
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Structure-based computational study of two disease resistance gene homologues (Hm1 and Hm2) in maize (Zea mays L.) with implications in plant-pathogen interactions. PLoS One (2014) 0.77
Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus. J Exp Bot (2014) 0.77
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Identification and characterization of NF-YB family genes in tung tree. Mol Genet Genomics (2015) 0.77
Structure based annotation of Helicobacter pylori strain 26695 proteome. PLoS One (2014) 0.76
Phylogenetic and structural analysis of the phospholipase A2 gene family in vertebrates. Int J Mol Med (2014) 0.76
Trichomonas vaginalis Cysteine Proteinases: Iron Response in Gene Expression and Proteolytic Activity. Biomed Res Int (2015) 0.76
In silico determination and validation of baumannii acinetobactin utilization a structure and ligand binding site. Biomed Res Int (2013) 0.76
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Probing phosphorylation-dependent protein interactions within functional domains of histone deacetylase 5 (HDAC5). Proteomics (2014) 0.76
Group 1 Allergen Genes in Two Species of House Dust Mites, Dermatophagoides farinae and D. pteronyssinus (Acari: Pyroglyphidae): Direct Sequencing, Characterization and Polymorphism. PLoS One (2014) 0.76
Investigation of anti-infection mechanism of lactoferricin and splunc-1. Evid Based Complement Alternat Med (2014) 0.76
Leishmania braziliensis replication protein A subunit 1: molecular modelling, protein expression and analysis of its affinity for both DNA and RNA. Parasit Vectors (2014) 0.76
Characterization of the β-barrel assembly machine accessory lipoproteins from Borrelia burgdorferi. BMC Microbiol (2015) 0.76
Novel Engineered Peptides of a Phage Lysin as Effective Antimicrobials against Multidrug-Resistant Acinetobacter baumannii. Antimicrob Agents Chemother (2016) 0.76
Cholesterol Interaction with the MAGUK Protein Family Member, MPP1, via CRAC and CRAC-Like Motifs: An In Silico Docking Analysis. PLoS One (2015) 0.76
Protein depth calculation and the use for improving accuracy of protein fold recognition. J Comput Biol (2013) 0.76
Misannotation Awareness: A Tale of Two Gene-Groups. Front Plant Sci (2016) 0.75
Alignment behaviors of short peptides provide a roadmap for functional profiling of metagenomic data. BMC Genomics (2015) 0.75
Predicting Ligand Binding Sites on Protein Surfaces by 3-Dimensional Probability Density Distributions of Interacting Atoms. PLoS One (2016) 0.75
Golgi anti-apoptotic proteins are highly conserved ion channels that affect apoptosis and cell migration. J Biol Chem (2015) 0.75
Protein ligand-specific binding residue predictions by an ensemble classifier. BMC Bioinformatics (2016) 0.75
Snx10: a newly identified locus associated with human osteopetrosis. IBMS Bonekey (2013) 0.75
A proteogenomic approach to understand splice isoform functions through sequence and expression-based computational modeling. Brief Bioinform (2016) 0.75
bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming. J Cheminform (2016) 0.75
Molecular and Functional Effects of a Splice Site Mutation in the MYL2 Gene Associated with Cardioskeletal Myopathy and Early Cardiac Death in Infants. Front Physiol (2016) 0.75
On the Physicochemical and Structural Modifications Associated with HIV-1 Subtype B Tropism Transition. AIDS Res Hum Retroviruses (2016) 0.75
Computational Analysis of the Ligand Binding Site of the Extracellular ATP Receptor, DORN1. PLoS One (2016) 0.75
Molecular phylogeny and predicted 3D structure of plant beta-D-N-acetylhexosaminidase. ScientificWorldJournal (2014) 0.75
Recognizing metal and acid radical ion-binding sites by integrating ab initio modeling with template-based transferals. Bioinformatics (2016) 0.75
Characterization of Vibrio fluvialis qnrVC5 Gene in Native and Heterologous Hosts: Synergy of qnrVC5 with other Determinants in Conferring Quinolone Resistance. Front Microbiol (2016) 0.75
A novel 72-kDa leukocyte-derived osteoglycin enhances the activation of toll-like receptor 4 and exacerbates cardiac inflammation during viral myocarditis. Cell Mol Life Sci (2016) 0.75
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The Subcellular Localization and Functional Analysis of Fibrillarin2, a Nucleolar Protein in Nicotiana benthamiana. Biomed Res Int (2016) 0.75
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In silico analysis and modeling of ACP-MIP-PilQ chimeric antigen from Neisseria meningitidis serogroup B. Rep Biochem Mol Biol (2015) 0.75
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