Published in BMC Res Notes on August 03, 2012
Cloud computing for detecting high-order genome-wide epistatic interaction via dynamic clustering. BMC Bioinformatics (2014) 0.87
Whole genome SNP genotype piecemeal imputation. BMC Bioinformatics (2015) 0.75
Comparison of three boosting methods in parent-offspring trios for genotype imputation using simulation study. J Anim Sci Technol (2016) 0.75
A new statistical method for haplotype reconstruction from population data. Am J Hum Genet (2001) 59.30
A new multipoint method for genome-wide association studies by imputation of genotypes. Nat Genet (2007) 52.68
A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet (2006) 28.32
MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet Epidemiol (2010) 26.41
Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am J Hum Genet (2007) 24.68
A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am J Hum Genet (2009) 17.80
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics (2003) 17.73
Imputation-based analysis of association studies: candidate regions and quantitative traits. PLoS Genet (2007) 15.55
Genetic mapping in human disease. Science (2008) 15.12
Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am J Hum Genet (2001) 10.48
Partition-ligation-expectation-maximization algorithm for haplotype inference with single-nucleotide polymorphisms. Am J Hum Genet (2002) 10.12
Haplotype inference in random population samples. Am J Hum Genet (2002) 8.07
Multilocus association mapping using variable-length Markov chains. Am J Hum Genet (2006) 5.13
Missing data imputation and haplotype phase inference for genome-wide association studies. Hum Genet (2008) 3.65
Imputation methods to improve inference in SNP association studies. Genet Epidemiol (2006) 2.41
Inferring missing genotypes in large SNP panels using fast nearest-neighbor searches over sliding windows. Bioinformatics (2007) 2.17
Methods to impute missing genotypes for population data. Hum Genet (2007) 1.98
Efficient reconstruction of haplotype structure via perfect phylogeny. J Bioinform Comput Biol (2003) 1.96
SNiPer: improved SNP genotype calling for Affymetrix 10K GeneChip microarray data. BMC Genomics (2005) 1.19
Tradeoff between no-call reduction in genotyping error rate and loss of sample size for genetic case/control association studies. Pac Symp Biocomput (2004) 0.97
Inference of missing SNPs and information quantity measurements for haplotype blocks. Bioinformatics (2005) 0.87
Iterative two-pass algorithm for missing data imputation in SNP arrays. J Bioinform Comput Biol (2009) 0.82
DrugBank: a comprehensive resource for in silico drug discovery and exploration. Nucleic Acids Res (2006) 15.19
HMDB: the Human Metabolome Database. Nucleic Acids Res (2007) 13.38
BASys: a web server for automated bacterial genome annotation. Nucleic Acids Res (2005) 13.30
The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (2009) 8.23
The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli. Nucleic Acids Res (2004) 4.29
Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars. Nat Genet (2013) 3.41
The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Res (2008) 3.33
Whole genome linkage disequilibrium maps in cattle. BMC Genet (2007) 3.28
PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites. Nucleic Acids Res (2008) 2.63
CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data. Nucleic Acids Res (2008) 2.41
BioSpider: a web server for automating metabolome annotations. Pac Symp Biocomput (2007) 2.32
Community-based health insurance in poor rural China: the distribution of net benefits. Health Policy Plan (2005) 2.12
Comparing thousands of circular genomes using the CGView Comparison Tool. BMC Genomics (2012) 1.95
Indications that live poultry markets are a major source of human H5N1 influenza virus infection in China. J Virol (2011) 1.85
In-depth annotation of SNPs arising from resequencing projects using NGS-SNP. Bioinformatics (2011) 1.64
Avian-origin H3N2 canine influenza A viruses in Southern China. Infect Genet Evol (2010) 1.63
A general edit distance between RNA structures. J Comput Biol (2002) 1.52
PlasMapper: a web server for drawing and auto-annotating plasmid maps. Nucleic Acids Res (2004) 1.49
Interactive microbial genome visualization with GView. Bioinformatics (2010) 1.45
Autopsy features of sudden death due to isolated eosinophilic coronary arteritis: report of two cases. J Forensic Nurs (2011) 1.40
Guest Editors Introduction to the Special Section on Bioinformatics Research and Applications. IEEE/ACM Trans Comput Biol Bioinform (2015) 1.38
The inverse problems for some topological indices in combinatorial chemistry. J Comput Biol (2003) 1.38
High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly. BMC Genomics (2007) 1.37
A stable gene selection in microarray data analysis. BMC Bioinformatics (2006) 1.35
Extent of antigenic cross-reactivity among highly pathogenic H5N1 influenza viruses. J Clin Microbiol (2011) 1.21
Computing the maximum similarity bi-clusters of gene expression data. Bioinformatics (2006) 1.20
Protein threading by linear programming. Pac Symp Biocomput (2003) 1.19
Active surveillance for avian influenza virus, Egypt, 2010-2012. Emerg Infect Dis (2014) 1.13
The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon- and xenobiotic-degrading bacterium, and features of relevance to biotechnology. Appl Environ Microbiol (2008) 1.09
A first generation whole genome RH map of the river buffalo with comparison to domestic cattle. BMC Genomics (2008) 1.08
Nucleotide composition string selection in HIV-1 subtyping using whole genomes. Bioinformatics (2007) 1.08
Correlation of particular bacterial PCR-denaturing gradient gel electrophoresis patterns with bovine ruminal fermentation parameters and feed efficiency traits. Appl Environ Microbiol (2010) 1.06
Regulatory compliance requirements for an open source electronic image trial management system. Conf Proc IEEE Eng Med Biol Soc (2010) 1.05
Characterization of bovine miRNAs by sequencing and bioinformatics analysis. BMC Mol Biol (2009) 1.05
Phylogenetic analysis using complete signature information of whole genomes and clustered Neighbour-Joining method. Int J Bioinform Res Appl (2006) 1.05
In silico identification of genes in bacteriophage DNA. Methods Mol Biol (2009) 1.04
GeNMR: a web server for rapid NMR-based protein structure determination. Nucleic Acids Res (2009) 1.04
Antigenic diversity and cross-reactivity of avian influenza H5N1 viruses in Egypt between 2006 and 2011. J Gen Virol (2012) 1.03
Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum. BMC Genomics (2010) 1.02
Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity. BMC Genomics (2013) 1.02
Lifetime adiposity and risk of pancreatic cancer in the NIH-AARP Diet and Health Study cohort. Am J Clin Nutr (2013) 1.01
AntigenMap 3D: an online antigenic cartography resource. Bioinformatics (2012) 1.01
Comparative analysis of two phenotypically-similar but genomically-distinct Burkholderia cenocepacia-specific bacteriophages. BMC Genomics (2012) 1.01
Ubiquitous reassortments in influenza A viruses. J Bioinform Comput Biol (2008) 1.00
Genome sequence and assembly of Bos indicus. J Hered (2012) 1.00
Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex. BMC Genomics (2010) 0.99
PPT-DB: the protein property prediction and testing database. Nucleic Acids Res (2007) 0.98
Computational identification of reassortments in avian influenza viruses. Avian Dis (2007) 0.98
PROSESS: a protein structure evaluation suite and server. Nucleic Acids Res (2010) 0.97
Predicting the number and sizes of IBD regions among family members and evaluating the family size requirement for linkage studies. Eur J Hum Genet (2008) 0.93
Glucagon receptor antagonist-mediated improvements in glycemic control are dependent on functional pancreatic GLP-1 receptor. Am J Physiol Endocrinol Metab (2010) 0.93
Finding the nearest neighbors in biological databases using less distance computations. IEEE/ACM Trans Comput Biol Bioinform (2010) 0.93
Algorithms for reticulate networks of multiple phylogenetic trees. IEEE/ACM Trans Comput Biol Bioinform (2011) 0.93
A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly. BMC Genomics (2007) 0.92
High density linkage disequilibrium maps of chromosome 14 in Holstein and Angus cattle. BMC Genet (2008) 0.92
Inactivation of Burkholderia cepacia complex phage KS9 gp41 identifies the phage repressor and generates lytic virions. J Virol (2009) 0.91
HybridNET: a tool for constructing hybridization networks. Bioinformatics (2010) 0.91
Identification of linked regions using high-density SNP genotype data in linkage analysis. Bioinformatics (2007) 0.91
Massively parallel sequencing of Chikso (Korean brindle cattle) to discover genome-wide SNPs and InDels. Mol Cells (2013) 0.91
Identification of novel and known oocyte-specific genes using complementary DNA subtraction and microarray analysis in three different species. Biol Reprod (2005) 0.90
Iterated local least squares microarray missing value imputation. J Bioinform Comput Biol (2006) 0.90
Genomic sequence and activity of KS10, a transposable phage of the Burkholderia cepacia complex. BMC Genomics (2008) 0.89
An ultrafast tool for minimum reticulate networks. J Comput Biol (2013) 0.89
Modeling protein interacting groups by quasi-bicliques: complexity, algorithm, and application. IEEE/ACM Trans Comput Biol Bioinform (2010) 0.89
Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding. BMC Genomics (2014) 0.89
Resolution-by-proxy: a simple measure for assessing and comparing the overall quality of NMR protein structures. J Biomol NMR (2012) 0.89
Genome-wide copy number variation in Hanwoo, Black Angus, and Holstein cattle. Mamm Genome (2013) 0.88
Exact algorithms for haplotype assembly from whole-genome sequence data. Bioinformatics (2013) 0.87
Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species. BMC Genomics (2013) 0.87
MyCompoundID: using an evidence-based metabolome library for metabolite identification. Anal Chem (2013) 0.86
Whole genome sequencing of Gir cattle for identifying polymorphisms and loci under selection. Genome (2013) 0.86
A 2cM genome-wide scan of European Holstein cattle affected by classical BSE. BMC Genet (2010) 0.85
Greedy method for inferring tandem duplication history. Bioinformatics (2003) 0.85
Avian Influenza A(H5N1) Virus in Egypt. Emerg Infect Dis (2016) 0.85
Characterization of DC1, a broad-host-range Bcep22-like podovirus. Appl Environ Microbiol (2011) 0.84
Most parsimonious haplotype allele sharing determination. BMC Bioinformatics (2009) 0.84
Identifying protein complexes based on density and modularity in protein-protein interaction network. BMC Syst Biol (2013) 0.84
Identification of Protein Complexes Using Weighted PageRank-Nibble Algorithm and Core-Attachment Structure. IEEE/ACM Trans Comput Biol Bioinform (2015) 0.84
Protein-protein binding sites prediction by 3D structural similarities. J Chem Inf Model (2011) 0.83
Rnall: an efficient algorithm for predicting RNA local secondary structural landscape in genomes. J Bioinform Comput Biol (2006) 0.83
ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets. BMC Bioinformatics (2009) 0.82
Simultaneous identification of duplications, losses, and lateral gene transfers. IEEE/ACM Trans Comput Biol Bioinform (2012) 0.82
BacMap: an up-to-date electronic atlas of annotated bacterial genomes. Nucleic Acids Res (2011) 0.82
Hematopoietic Lineage Transcriptome Stability and Representation in PAXgene Collected Peripheral Blood Utilising SPIA Single-Stranded cDNA Probes for Microarray. Biomark Insights (2008) 0.81
Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples. BMC Genomics (2014) 0.81
IPMiner: a progenitor gene identifier for influenza A virus. Influenza Other Respir Viruses (2011) 0.81
Protein-protein binding site identification by enumerating the configurations. BMC Bioinformatics (2012) 0.81
A highly accurate heuristic algorithm for the haplotype assembly problem. BMC Genomics (2013) 0.80