Rank |
Title |
Journal |
Year |
PubWeight™‹?› |
1
|
A core gut microbiome in obese and lean twins.
|
Nature
|
2008
|
52.30
|
2
|
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.
|
Nucleic Acids Res
|
2008
|
27.83
|
3
|
The carbohydrate-active enzymes database (CAZy) in 2013.
|
Nucleic Acids Res
|
2013
|
10.24
|
4
|
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans.
|
Science
|
2011
|
8.88
|
5
|
Gut microbiota from twins discordant for obesity modulate metabolism in mice.
|
Science
|
2013
|
8.81
|
6
|
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins.
|
Proc Natl Acad Sci U S A
|
2010
|
7.09
|
7
|
An evolving hierarchical family classification for glycosyltransferases.
|
J Mol Biol
|
2003
|
6.48
|
8
|
Metabolic reconstruction for metagenomic data and its application to the human microbiome.
|
PLoS Comput Biol
|
2012
|
6.27
|
9
|
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88.
|
Nat Biotechnol
|
2007
|
6.21
|
10
|
Evolution of symbiotic bacteria in the distal human intestine.
|
PLoS Biol
|
2007
|
5.79
|
11
|
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.
|
Nature
|
2010
|
5.79
|
12
|
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).
|
Nat Biotechnol
|
2008
|
5.38
|
13
|
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita.
|
Nat Biotechnol
|
2008
|
5.19
|
14
|
The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.
|
Science
|
2012
|
4.93
|
15
|
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78.
|
Nat Biotechnol
|
2004
|
4.85
|
16
|
The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins.
|
Sci Transl Med
|
2011
|
4.24
|
17
|
Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of alpha-amylase-related proteins.
|
Protein Eng Des Sel
|
2006
|
4.13
|
18
|
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla.
|
Proc Natl Acad Sci U S A
|
2009
|
4.09
|
19
|
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
|
Science
|
2009
|
4.05
|
20
|
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases.
|
Proc Natl Acad Sci U S A
|
2009
|
4.03
|
21
|
Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts.
|
PLoS Biol
|
2011
|
3.97
|
22
|
Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.
|
PLoS Genet
|
2011
|
3.52
|
23
|
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes.
|
Biotechnol Biofuels
|
2013
|
3.30
|
24
|
Poplar carbohydrate-active enzymes. Gene identification and expression analyses.
|
Plant Physiol
|
2006
|
3.30
|
25
|
Recent structural insights into the expanding world of carbohydrate-active enzymes.
|
Curr Opin Struct Biol
|
2005
|
3.01
|
26
|
Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants.
|
Science
|
2012
|
2.93
|
27
|
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses.
|
Nat Genet
|
2012
|
2.92
|
28
|
Obligate biotrophy features unraveled by the genomic analysis of rust fungi.
|
Proc Natl Acad Sci U S A
|
2011
|
2.84
|
29
|
Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut.
|
Proc Natl Acad Sci U S A
|
2007
|
2.79
|
30
|
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.
|
Appl Environ Microbiol
|
2009
|
2.75
|
31
|
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.
|
Proc Natl Acad Sci U S A
|
2009
|
2.71
|
32
|
The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi.
|
Science
|
2011
|
2.67
|
33
|
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.
|
PLoS Pathog
|
2012
|
2.66
|
34
|
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis.
|
Nature
|
2010
|
2.61
|
35
|
Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis.
|
PLoS Genet
|
2011
|
2.58
|
36
|
Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5).
|
BMC Evol Biol
|
2012
|
2.54
|
37
|
Genome sequence of the model mushroom Schizophyllum commune.
|
Nat Biotechnol
|
2010
|
2.44
|
38
|
The genome sequence of the model ascomycete fungus Podospora anserina.
|
Genome Biol
|
2008
|
2.43
|
39
|
Bacterial glycosidases for the production of universal red blood cells.
|
Nat Biotechnol
|
2007
|
2.41
|
40
|
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire.
|
Genome Biol
|
2010
|
2.36
|
41
|
The abundance and variety of carbohydrate-active enzymes in the human gut microbiota.
|
Nat Rev Microbiol
|
2013
|
2.36
|
42
|
The convergence of carbohydrate active gene repertoires in human gut microbes.
|
Proc Natl Acad Sci U S A
|
2008
|
2.33
|
43
|
The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion.
|
PLoS Genet
|
2009
|
2.29
|
44
|
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.
|
Genome Biol
|
2011
|
2.17
|
45
|
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.
|
Nature
|
2012
|
2.15
|
46
|
Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii.
|
Appl Environ Microbiol
|
2007
|
2.15
|
47
|
Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging.
|
Proc Natl Acad Sci U S A
|
2010
|
2.14
|
48
|
Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens.
|
PLoS Pathog
|
2011
|
2.13
|
49
|
Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris.
|
Nat Biotechnol
|
2011
|
2.11
|
50
|
Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis.
|
Appl Environ Microbiol
|
2009
|
2.11
|
51
|
Complex carbohydrate utilization by the healthy human microbiome.
|
PLoS One
|
2012
|
2.01
|
52
|
Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice.
|
ISME J
|
2010
|
1.95
|
53
|
The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry.
|
PLoS Genet
|
2012
|
1.95
|
54
|
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis.
|
Proc Natl Acad Sci U S A
|
2013
|
1.94
|
55
|
Mucolipidosis II is caused by mutations in GNPTA encoding the alpha/beta GlcNAc-1-phosphotransferase.
|
Nat Med
|
2005
|
1.93
|
56
|
Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis.
|
Plant J
|
2006
|
1.91
|
57
|
Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes.
|
Proc Natl Acad Sci U S A
|
2010
|
1.89
|
58
|
A hierarchical classification of polysaccharide lyases for glycogenomics.
|
Biochem J
|
2010
|
1.87
|
59
|
Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease.
|
PLoS One
|
2012
|
1.84
|
60
|
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga.
|
Nature
|
2013
|
1.76
|
61
|
Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche.
|
Microb Ecol
|
2010
|
1.74
|
62
|
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche.
|
Proc Natl Acad Sci U S A
|
2012
|
1.74
|
63
|
Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum.
|
Genome Biol
|
2011
|
1.72
|
64
|
The three-dimensional structure of invertase (beta-fructosidase) from Thermotoga maritima reveals a bimodular arrangement and an evolutionary relationship between retaining and inverting glycosidases.
|
J Biol Chem
|
2004
|
1.64
|
65
|
Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T.
|
PLoS Genet
|
2008
|
1.64
|
66
|
The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity.
|
PLoS Genet
|
2009
|
1.64
|
67
|
Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes.
|
Genome Res
|
2010
|
1.64
|
68
|
Carbohydrate-active enzymes involved in the secondary cell wall biogenesis in hybrid aspen.
|
Plant Physiol
|
2005
|
1.62
|
69
|
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.
|
Proc Natl Acad Sci U S A
|
2012
|
1.61
|
70
|
Klotho is a novel beta-glucuronidase capable of hydrolyzing steroid beta-glucuronides.
|
J Biol Chem
|
2003
|
1.57
|
71
|
The 2008 update of the Aspergillus nidulans genome annotation: a community effort.
|
Fungal Genet Biol
|
2008
|
1.56
|
72
|
Mimivirus shows dramatic genome reduction after intraamoebal culture.
|
Proc Natl Acad Sci U S A
|
2011
|
1.54
|
73
|
X4 modules represent a new family of carbohydrate-binding modules that display novel properties.
|
J Biol Chem
|
2004
|
1.51
|
74
|
Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen.
|
Proc Natl Acad Sci U S A
|
2011
|
1.50
|
75
|
Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725.
|
Nucleic Acids Res
|
2011
|
1.48
|
76
|
Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus.
|
J Bacteriol
|
2008
|
1.47
|
77
|
Genome analyses highlight the different biological roles of cellulases.
|
Nat Rev Microbiol
|
2012
|
1.46
|
78
|
Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome.
|
PLoS Biol
|
2013
|
1.45
|
79
|
Complete cellulase system in the marine bacterium Saccharophagus degradans strain 2-40T.
|
J Bacteriol
|
2006
|
1.41
|
80
|
Cello-oligosaccharide oxidation reveals differences between two lytic polysaccharide monooxygenases (family GH61) from Podospora anserina.
|
Appl Environ Microbiol
|
2012
|
1.39
|
81
|
Genomic and proteomic analyses of the agarolytic system expressed by Saccharophagus degradans 2-40.
|
Appl Environ Microbiol
|
2006
|
1.39
|
82
|
The three-dimensional structures of two beta-agarases.
|
J Biol Chem
|
2003
|
1.38
|
83
|
Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1.
|
PLoS One
|
2009
|
1.37
|
84
|
Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae.
|
Fungal Genet Biol
|
2009
|
1.35
|
85
|
Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis.
|
BMC Genomics
|
2012
|
1.34
|
86
|
Why are there so many carbohydrate-active enzyme-related genes in plants?
|
Trends Plant Sci
|
2003
|
1.34
|
87
|
FOLy: an integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds.
|
Fungal Genet Biol
|
2008
|
1.31
|
88
|
Genome sequence of the model medicinal mushroom Ganoderma lucidum.
|
Nat Commun
|
2012
|
1.30
|
89
|
The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms).
|
PLoS One
|
2009
|
1.28
|
90
|
Quantitative trait loci and comparative genomics of cereal cell wall composition.
|
Plant Physiol
|
2003
|
1.27
|
91
|
Viral RNA-polymerases -- a predicted 2'-O-ribose methyltransferase domain shared by all Mononegavirales.
|
Trends Biochem Sci
|
2002
|
1.27
|
92
|
Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production.
|
J Bacteriol
|
2010
|
1.25
|
93
|
Utilisation of mucin glycans by the human gut symbiont Ruminococcus gnavus is strain-dependent.
|
PLoS One
|
2013
|
1.25
|
94
|
Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut.
|
PLoS One
|
2012
|
1.23
|
95
|
The family 6 carbohydrate binding module CmCBM6-2 contains two ligand-binding sites with distinct specificities.
|
J Biol Chem
|
2004
|
1.23
|
96
|
Protein disorder: conformational distribution of the flexible linker in a chimeric double cellulase.
|
Biophys J
|
2005
|
1.22
|
97
|
Mycobacterium tuberculosis complex mycobacteria as amoeba-resistant organisms.
|
PLoS One
|
2011
|
1.22
|
98
|
Structural determinants of substrate specificity in family 1 beta-glucosidases: novel insights from the crystal structure of sorghum dhurrinase-1, a plant beta-glucosidase with strict specificity, in complex with its natural substrate.
|
J Biol Chem
|
2004
|
1.21
|
99
|
Crystal structure of Thermotoga maritima alpha-L-fucosidase. Insights into the catalytic mechanism and the molecular basis for fucosidosis.
|
J Biol Chem
|
2004
|
1.20
|
100
|
Are stool samples suitable for studying the link between gut microbiota and obesity?
|
Eur J Epidemiol
|
2014
|
1.19
|
101
|
Parallel substrate binding sites in a beta-agarase suggest a novel mode of action on double-helical agarose.
|
Structure
|
2004
|
1.19
|
102
|
Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.
|
G3 (Bethesda)
|
2013
|
1.18
|
103
|
Genome of the red alga Porphyridium purpureum.
|
Nat Commun
|
2013
|
1.17
|
104
|
Dimension, shape, and conformational flexibility of a two domain fungal cellulase in solution probed by small angle X-ray scattering.
|
J Biol Chem
|
2002
|
1.17
|
105
|
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.
|
New Phytol
|
2012
|
1.17
|
106
|
Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize.
|
BMC Genomics
|
2012
|
1.14
|
107
|
How nature can exploit nonspecific catalytic and carbohydrate binding modules to create enzymatic specificity.
|
Proc Natl Acad Sci U S A
|
2012
|
1.14
|
108
|
Modulation of cellulosome composition in Clostridium cellulolyticum: adaptation to the polysaccharide environment revealed by proteomic and carbohydrate-active enzyme analyses.
|
Proteomics
|
2010
|
1.13
|
109
|
Podospora anserina hemicellulases potentiate the Trichoderma reesei secretome for saccharification of lignocellulosic biomass.
|
Appl Environ Microbiol
|
2010
|
1.13
|
110
|
Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1.
|
PLoS One
|
2010
|
1.10
|
111
|
Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level.
|
BMC Genomics
|
2011
|
1.10
|
112
|
Structural organization and a standardized nomenclature for plant endo-1,4-beta-glucanases (cellulases) of glycosyl hydrolase family 9.
|
Plant Physiol
|
2007
|
1.10
|
113
|
The crystal structure of the family 6 carbohydrate binding module from Cellvibrio mixtus endoglucanase 5a in complex with oligosaccharides reveals two distinct binding sites with different ligand specificities.
|
J Biol Chem
|
2004
|
1.08
|
114
|
Identification of a GH110 subfamily of alpha 1,3-galactosidases: novel enzymes for removal of the alpha 3Gal xenotransplantation antigen.
|
J Biol Chem
|
2008
|
1.07
|
115
|
Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay.
|
Mycologia
|
2013
|
1.07
|
116
|
Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis.
|
BMC Genomics
|
2014
|
1.07
|
117
|
Crystal structure of inactivated Thermotoga maritima invertase in complex with the trisaccharide substrate raffinose.
|
Biochem J
|
2006
|
1.06
|
118
|
Emergence of a subfamily of xylanase inhibitors within glycoside hydrolase family 18.
|
FEBS J
|
2005
|
1.05
|
119
|
Membrane association is a determinant for substrate recognition by PMT4 protein O-mannosyltransferases.
|
Proc Natl Acad Sci U S A
|
2007
|
1.05
|
120
|
Viewing the human microbiome through three-dimensional glasses: integrating structural and functional studies to better define the properties of myriad carbohydrate-active enzymes.
|
Acta Crystallogr Sect F Struct Biol Cryst Commun
|
2010
|
1.03
|
121
|
Characterization of salt-adapted secreted lignocellulolytic enzymes from the mangrove fungus Pestalotiopsis sp.
|
Nat Commun
|
2013
|
1.03
|
122
|
Biochemical and structural characterization of the intracellular mannanase AaManA of Alicyclobacillus acidocaldarius reveals a novel glycoside hydrolase family belonging to clan GH-A.
|
J Biol Chem
|
2008
|
1.02
|
123
|
Molecular basis for galactosylation of core fucose residues in invertebrates: identification of caenorhabditis elegans N-glycan core alpha1,6-fucoside beta1,4-galactosyltransferase GALT-1 as a member of a novel glycosyltransferase family.
|
J Biol Chem
|
2009
|
1.01
|
124
|
Signature active site architectures illuminate the molecular basis for ligand specificity in family 35 carbohydrate binding module.
|
Biochemistry
|
2010
|
1.01
|
125
|
Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system.
|
BMC Genomics
|
2012
|
1.00
|
126
|
Detailed kinetic analysis of a family 52 glycoside hydrolase: a beta-xylosidase from Geobacillus stearothermophilus.
|
Biochemistry
|
2003
|
1.00
|
127
|
Evolutionary and mechanistic relationships between glycosidases acting on alpha- and beta-bonds.
|
Carbohydr Res
|
2005
|
0.99
|
128
|
Enzyme-substrate complex structures of a GH39 beta-xylosidase from Geobacillus stearothermophilus.
|
J Mol Biol
|
2005
|
0.98
|
129
|
VaZyMolO: a tool to define and classify modularity in viral proteins.
|
J Gen Virol
|
2005
|
0.98
|
130
|
Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae.
|
New Phytol
|
2013
|
0.97
|
131
|
Effects of dietary fiber on the feline gastrointestinal metagenome.
|
J Proteome Res
|
2012
|
0.96
|
132
|
Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans.
|
Environ Microbiol
|
2013
|
0.95
|
133
|
Functional metagenomics reveals novel pathways of prebiotic breakdown by human gut bacteria.
|
PLoS One
|
2013
|
0.95
|
134
|
Tropheryma whipplei glycosylation in the pathophysiologic profile of Whipple's disease.
|
J Infect Dis
|
2009
|
0.95
|
135
|
Analysis of the structural and functional diversity of plant cell wall specific family 6 carbohydrate binding modules.
|
Biochemistry
|
2009
|
0.94
|
136
|
The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.
|
BMC Genomics
|
2014
|
0.94
|
137
|
Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics.
|
Biotechnol Biofuels
|
2013
|
0.93
|
138
|
Degradation of different pectins by fungi: correlations and contrasts between the pectinolytic enzyme sets identified in genomes and the growth on pectins of different origin.
|
BMC Genomics
|
2012
|
0.93
|
139
|
A family GH51 α-L-arabinofuranosidase from Pleurotus ostreatus: identification, recombinant expression and characterization.
|
Appl Microbiol Biotechnol
|
2011
|
0.92
|
140
|
The α-glucuronidase Agu1 from Schizophyllum commune is a member of a novel glycoside hydrolase family (GH115).
|
Appl Microbiol Biotechnol
|
2011
|
0.92
|
141
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