Published in Genome Announc on January 31, 2013
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The IGS Standard Operating Procedure for Automated Prokaryotic Annotation. Stand Genomic Sci (2011) 3.62
A polymicrobial perspective of pulmonary infections exposes an enigmatic pathogen in cystic fibrosis patients. Proc Natl Acad Sci U S A (2008) 3.28
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Functional and phylogenetic characterization of Vaginolysin, the human-specific cytolysin from Gardnerella vaginalis. J Bacteriol (2008) 1.93
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Inerolysin, a cholesterol-dependent cytolysin produced by Lactobacillus iners. J Bacteriol (2010) 1.13
Intermedilysin is essential for the invasion of hepatoma HepG2 cells by Streptococcus intermedius. Microbiol Immunol (2005) 0.98
Rapid identification of Streptococcus intermedius by PCR with the ily gene as a species marker gene. J Med Microbiol (2002) 0.96
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PANTHER: a library of protein families and subfamilies indexed by function. Genome Res (2003) 21.64
The B73 maize genome: complexity, diversity, and dynamics. Science (2009) 18.73
The Sorghum bicolor genome and the diversification of grasses. Nature (2009) 14.62
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proc Natl Acad Sci U S A (2005) 14.59
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature (2003) 10.38
Assessment of genome-wide protein function classification for Drosophila melanogaster. Genome Res (2003) 8.39
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. PLoS Biol (2004) 7.95
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
Moving pictures of the human microbiome. Genome Biol (2011) 6.72
The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J Bacteriol (2008) 6.02
Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. Proc Natl Acad Sci U S A (2004) 5.98
Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae. Proc Natl Acad Sci U S A (2002) 5.28
The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts. Proc Natl Acad Sci U S A (2002) 5.28
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species. PLoS Biol (2005) 5.22
Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella. Proc Natl Acad Sci U S A (2005) 5.02
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature (2004) 5.00
Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic Acids Res (2004) 4.97
Global genetic population structure of Bacillus anthracis. PLoS One (2007) 4.94
Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters. PLoS Biol (2006) 4.92
Identification of anthrax toxin genes in a Bacillus cereus associated with an illness resembling inhalation anthrax. Proc Natl Acad Sci U S A (2004) 4.73
Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nat Biotechnol (2005) 4.65
Temporal dynamics of the human vaginal microbiota. Sci Transl Med (2012) 4.58
Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83. J Bacteriol (2003) 4.41
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nat Genet (2010) 4.35
Comparative genomics of emerging human ehrlichiosis agents. PLoS Genet (2006) 4.23
Multiple antimicrobial resistance in plague: an emerging public health risk. PLoS One (2007) 4.21
Complete genome sequence of the Q-fever pathogen Coxiella burnetii. Proc Natl Acad Sci U S A (2003) 4.20
Structural flexibility in the Burkholderia mallei genome. Proc Natl Acad Sci U S A (2004) 4.13
Natural combinatorial peptide libraries in cyanobacterial symbionts of marine ascidians. Nat Chem Biol (2006) 4.12
The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1. Nucleic Acids Res (2004) 3.62
A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics (2008) 3.57
Visualization of comparative genomic analyses by BLAST score ratio. BMC Bioinformatics (2005) 3.54
Metagenomics: read length matters. Appl Environ Microbiol (2008) 3.51
The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nat Biotechnol (2004) 3.43
Genomics of the Bacillus cereus group of organisms. FEMS Microbiol Rev (2005) 3.23
The Ngal reporter mouse detects the response of the kidney to injury in real time. Nat Med (2011) 3.20
A global assembly line for cyanobactins. Nat Chem Biol (2008) 3.17
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. Proc Natl Acad Sci U S A (2005) 3.10
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. Science (2005) 3.10
Genomic diversity of 2010 Haitian cholera outbreak strains. Proc Natl Acad Sci U S A (2012) 3.04
Transfusion of red blood cells after prolonged storage produces harmful effects that are mediated by iron and inflammation. Blood (2010) 3.03
Chapter 8. Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data. Methods Enzymol (2009) 2.93
Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens. Genome Res (2006) 2.84
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol (2009) 2.75
Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation. Proc Natl Acad Sci U S A (2011) 2.62
Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes. Proc Natl Acad Sci U S A (2004) 2.60
Draft genome sequence of the oilseed species Ricinus communis. Nat Biotechnol (2010) 2.52
The role of innate immune responses in the outcome of interspecies competition for colonization of mucosal surfaces. PLoS Pathog (2005) 2.41
Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. J Bacteriol (2005) 2.38
Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). PLoS Biol (2004) 2.36
Evaluation of methods for the extraction and purification of DNA from the human microbiome. PLoS One (2012) 2.34
Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain. J Clin Microbiol (2006) 2.33
DNase inhibits Gardnerella vaginalis biofilms in vitro and in vivo. J Infect Dis (2013) 2.29
The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women. Microbiome (2014) 2.24
A genome-wide characterization of microRNA genes in maize. PLoS Genet (2009) 2.23
Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901. PLoS Genet (2005) 2.21
The effects of circumcision on the penis microbiome. PLoS One (2010) 2.15
Capsule enhances pneumococcal colonization by limiting mucus-mediated clearance. Infect Immun (2006) 2.15
Emergence of vaccine-related pneumococcal serotypes as a cause of bacteremia. Clin Infect Dis (2006) 2.13
Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment. Proc Natl Acad Sci U S A (2006) 2.13
Genomic anatomy of Escherichia coli O157:H7 outbreaks. Proc Natl Acad Sci U S A (2011) 2.13
Formation and composition of the Bacillus anthracis endospore. J Bacteriol (2004) 2.12
Iron traffics in circulation bound to a siderocalin (Ngal)-catechol complex. Nat Chem Biol (2010) 2.06
Comparative genomics of the IncA/C multidrug resistance plasmid family. J Bacteriol (2009) 2.06
Vaginal microbiome: rethinking health and disease. Annu Rev Microbiol (2012) 1.94
Functional and phylogenetic characterization of Vaginolysin, the human-specific cytolysin from Gardnerella vaginalis. J Bacteriol (2008) 1.93
Role of pore-forming toxins in bacterial infectious diseases. Microbiol Mol Biol Rev (2013) 1.91
Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA. Appl Environ Microbiol (2011) 1.88
Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319. J Bacteriol (2011) 1.86
Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination. Proc Natl Acad Sci U S A (2011) 1.84
Comparison of self-collected and physician-collected vaginal swabs for microbiome analysis. J Clin Microbiol (2010) 1.82
Antibody-enhanced pneumococcal adherence requires IgA1 protease. Proc Natl Acad Sci U S A (2003) 1.81
Rapid fluctuation of the vaginal microbiota measured by Gram stain analysis. Sex Transm Infect (2010) 1.80
Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1. PLoS Genet (2006) 1.76
Proof of concept of microbiome-metabolome analysis and delayed gluten exposure on celiac disease autoimmunity in genetically at-risk infants. PLoS One (2012) 1.74
Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1. J Bacteriol (2006) 1.70
Community analysis of chronic wound bacteria using 16S rRNA gene-based pyrosequencing: impact of diabetes and antibiotics on chronic wound microbiota. PLoS One (2009) 1.68
Bacillus anthracis in China and its relationship to worldwide lineages. BMC Microbiol (2009) 1.63
Pre-Columbian origins for North American anthrax. PLoS One (2009) 1.63
The breast: a clean-contaminated surgical site. Aesthet Surg J (2011) 1.61
Microarray-based resequencing of multiple Bacillus anthracis isolates. Genome Biol (2004) 1.61
Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium. J Bacteriol (2010) 1.60
Murine nasal septa for respiratory epithelial air-liquid interface cultures. Biotechniques (2007) 1.59
Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution. J Bacteriol (2011) 1.57
Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. J Bacteriol (2008) 1.49
Antimicrobial resistance-conferring plasmids with similarity to virulence plasmids from avian pathogenic Escherichia coli strains in Salmonella enterica serovar Kentucky isolates from poultry. Appl Environ Microbiol (2009) 1.48
Nod1 signaling overcomes resistance of S. pneumoniae to opsonophagocytic killing. PLoS Pathog (2007) 1.45
The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever. PLoS Genet (2007) 1.43
Assessment of the human faecal microbiota: II. Reproducibility and associations of 16S rRNA pyrosequences. Eur J Clin Invest (2012) 1.43
Recent advances in understanding the microbiology of the female reproductive tract and the causes of premature birth. Infect Dis Obstet Gynecol (2010) 1.43
The NanA neuraminidase of Streptococcus pneumoniae is involved in biofilm formation. Infect Immun (2009) 1.36
Streptococcus pneumoniae DNA initiates type I interferon signaling in the respiratory tract. MBio (2011) 1.34
Identification of new, conserved, non-ribosomal peptide synthetases from fluorescent pseudomonads involved in the biosynthesis of the siderophore pyoverdine. Mol Microbiol (2002) 1.34
Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats. BMC Genomics (2008) 1.32