Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli.

PubWeight™: 3.22‹?› | Rank: Top 1%

🔗 View Article (PMC 305185)

Published in Proc Natl Acad Sci U S A on July 01, 1987

Authors

A Hui, H A de Boer

Articles citing this

The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature (2012) 4.27

Programmed translational frameshifting. Microbiol Rev (1996) 3.89

Reading frame switch caused by base-pair formation between the 3' end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli. EMBO J (1988) 3.18

A single base change in the Shine-Dalgarno region of 16S rRNA of Escherichia coli affects translation of many proteins. Proc Natl Acad Sci U S A (1987) 2.62

Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1. Nucleic Acids Res (1991) 2.48

Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures. J Bacteriol (2002) 2.47

Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli. Cell (2011) 2.29

Mutant 16S ribosomal RNA: a codon-specific translational suppressor. Proc Natl Acad Sci U S A (1988) 2.26

Selection of the mRNA translation initiation region by Escherichia coli ribosomes. Proc Natl Acad Sci U S A (1988) 2.12

Messenger RNA recognition in Escherichia coli: a possible second site of interaction with 16S ribosomal RNA. EMBO J (1988) 1.91

rRNA-mRNA base pairing stimulates a programmed -1 ribosomal frameshift. J Bacteriol (1994) 1.88

Mutation at position 791 in Escherichia coli 16S ribosomal RNA affects processes involved in the initiation of protein synthesis. Proc Natl Acad Sci U S A (1989) 1.84

The downstream box: an efficient and independent translation initiation signal in Escherichia coli. EMBO J (1996) 1.70

Protein synthesis by ribosomes with tethered subunits. Nature (2015) 1.63

Quantitative analysis of ribosome binding sites in E.coli. Nucleic Acids Res (1994) 1.63

Predicting Shine-Dalgarno sequence locations exposes genome annotation errors. PLoS Comput Biol (2006) 1.55

Protein S1 counteracts the inhibitory effect of the extended Shine-Dalgarno sequence on translation. RNA (2002) 1.55

rRNA-complementarity in the 5' untranslated region of mRNA specifying the Gtx homeodomain protein: evidence that base- pairing to 18S rRNA affects translational efficiency. Proc Natl Acad Sci U S A (1999) 1.51

Formation of the central pseudoknot in 16S rRNA is essential for initiation of translation. EMBO J (1993) 1.44

Enhancement of translation by the downstream box does not involve base pairing of mRNA with the penultimate stem sequence of 16S rRNA. Proc Natl Acad Sci U S A (1999) 1.43

The initiation codon affects ribosome binding and translational efficiency in Escherichia coli of cI mRNA with or without the 5' untranslated leader. J Bacteriol (2001) 1.39

Spectinomycin interacts specifically with the residues G1064 and C1192 in 16S rRNA, thereby potentially freezing this molecule into an inactive conformation. Nucleic Acids Res (1994) 1.36

Identifying functional regions of rRNA by insertion mutagenesis and complete gene replacement in Tetrahymena thermophila. EMBO J (1989) 1.30

The ribosome filter redux. Cell Cycle (2007) 1.27

Effects of Escherichia coli physiology on growth of phage T7 in vivo and in silico. J Bacteriol (2002) 1.25

Leaderless mRNAs bind 70S ribosomes more strongly than 30S ribosomal subunits in Escherichia coli. J Bacteriol (2002) 1.23

An algorithmic framework for genome-wide modeling and analysis of translation networks. Biophys J (2005) 1.21

Deleterious mutations in small subunit ribosomal RNA identify functional sites and potential targets for antibiotics. Proc Natl Acad Sci U S A (2005) 1.21

Role of 16S ribosomal RNA methylations in translation initiation in Escherichia coli. EMBO J (2008) 1.17

Evolutionary conservation of reactions in translation. Microbiol Mol Biol Rev (2002) 1.16

Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli. RNA (2005) 1.15

An efficient Shine-Dalgarno sequence but not translation is necessary for lacZ mRNA stability in Escherichia coli. J Bacteriol (1994) 1.12

Intermolecular mRNA-rRNA hybridization and the distribution of potential interaction regions in murine 18S rRNA. Nucleic Acids Res (1993) 1.12

The coding and noncoding architecture of the Caulobacter crescentus genome. PLoS Genet (2014) 1.11

Downstream box-anti-downstream box interactions are dispensable for translation initiation of leaderless mRNAs. EMBO J (1996) 1.11

Mechanism of translational coupling in the nifLA operon of Klebsiella pneumoniae. EMBO J (1998) 1.10

Base complementarity in helix 2 of the central pseudoknot in 16S rRNA is essential for ribosome functioning. Nucleic Acids Res (1998) 1.06

Computational design of orthogonal ribosomes. Nucleic Acids Res (2008) 1.04

Complementarity of Bacillus subtilis 16S rRNA with sites of antibiotic-dependent ribosome stalling in cat and erm leaders. J Bacteriol (1990) 1.04

The highly efficient translation initiation region from the Escherichia coli rpsA gene lacks a shine-dalgarno element. J Bacteriol (2006) 1.00

Molecular cloning and characterization of the afa-7 and afa-8 gene clusters encoding afimbrial adhesins in Escherichia coli strains associated with diarrhea or septicemia in calves. Infect Immun (1999) 1.00

Base changes at position 792 of Escherichia coli 16S rRNA affect assembly of 70S ribosomes. Proc Natl Acad Sci U S A (1990) 1.00

In vivo analysis of sequences required for translation of cytochrome b transcripts in yeast mitochondria. Mol Cell Biol (1995) 0.97

Engineering of bacterial ribosomes: replacement of all seven Escherichia coli rRNA operons by a single plasmid-encoded operon. Proc Natl Acad Sci U S A (1999) 0.97

Crucial contribution of the multiple copies of the initiator tRNA genes in the fidelity of tRNA(fMet) selection on the ribosomal P-site in Escherichia coli. Nucleic Acids Res (2010) 0.96

An antibiotic-binding motif of an RNA fragment derived from the A-site-related region of Escherichia coli 16S rRNA. Nucleic Acids Res (1996) 0.96

Selective translation during stress in Escherichia coli. Trends Biochem Sci (2012) 0.95

Ribosomal proteins S7 and L1 are located close to the decoding site of E. coli ribosome--affinity labeling studies with modified tRNAs carrying photoreactive probes attached adjacent to the 3'-end of the anticodon. Nucleic Acids Res (1989) 0.95

Resistance of lambda cI translation to antibiotics that inhibit translation initiation. J Bacteriol (1993) 0.92

Initiation of mRNA translation in bacteria: structural and dynamic aspects. Cell Mol Life Sci (2015) 0.92

Separation of mutant and wild-type ribosomes based on differences in their anti Shine-Dalgarno sequence. Nucleic Acids Res (1993) 0.91

Ribosome-initiator tRNA complex as an intermediate in translation initiation in Escherichia coli revealed by use of mutant initiator tRNAs and specialized ribosomes. EMBO J (1996) 0.91

Identification and role of functionally important motifs in the 970 loop of Escherichia coli 16S ribosomal RNA. J Mol Biol (2007) 0.90

Isolation of antibiotic resistance mutations in the rRNA by using an in vitro selection system. Proc Natl Acad Sci U S A (2004) 0.89

In vivo evidence for the prokaryotic model of extended codon-anticodon interaction in translation initiation. EMBO J (2003) 0.88

Reprogramming the genetic code. EMBO J (2011) 0.87

Effects of induction of rRNA overproduction on ribosomal protein synthesis and ribosome subunit assembly in Escherichia coli. J Bacteriol (1988) 0.86

Expression of a streptomycete leaderless mRNA encoding chloramphenicol acetyltransferase in Escherichia coli. J Bacteriol (1997) 0.86

A 5'-terminal phosphate is required for stable ternary complex formation and translation of leaderless mRNA in Escherichia coli. RNA (2012) 0.84

Haloferax volcanii, a prokaryotic species that does not use the Shine Dalgarno mechanism for translation initiation at 5'-UTRs. PLoS One (2014) 0.83

RNA stem-loop enhanced expression of previously non-expressible genes. Nucleic Acids Res (2004) 0.83

Phenotypic effects of targeted mutations in the small subunit rRNA gene of Tetrahymena thermophila. Mol Cell Biol (1993) 0.83

A role for initiation codon context in chloroplast translation. Plant Cell (2001) 0.82

The impact of transcriptional tuning on in vitro integrated rRNA transcription and ribosome construction. Nucleic Acids Res (2014) 0.82

Analysis of free energy signals arising from nucleotide hybridization between rRNA and mRNA sequences during translation in eubacteria. EURASIP J Bioinform Syst Biol (2006) 0.81

Antisense masking reveals contributions of mRNA-rRNA base pairing to translation of Gtx and FGF2 mRNAs. J Biol Chem (2008) 0.81

Distribution and diversity of ribosome binding sites in prokaryotic genomes. BMC Genomics (2015) 0.81

A plausible role for the presence of internal shine-dalgarno sites. Bioinform Biol Insights (2010) 0.79

Analysis of rRNA processing and translation in mammalian cells using a synthetic 18S rRNA expression system. Nucleic Acids Res (2012) 0.78

Biology by design: from top to bottom and back. J Biomed Biotechnol (2010) 0.78

Pseudoknot-dependent translational coupling in repBA genes of the IncB plasmid pMU720 involves reinitiation. J Bacteriol (2002) 0.78

Translation regulation by ribosomes: Increased complexity and expanded scope. RNA Biol (2015) 0.77

Inefficient translation renders the Enterococcus faecalis fabK enoyl-acyl carrier protein reductase phenotypically cryptic. J Bacteriol (2013) 0.77

Escherichia coli and Staphylococcus phages: effect of translation initiation efficiency on differential codon adaptation mediated by virulent and temperate lifestyles. J Gen Virol (2015) 0.77

Novel translation initiation regulation mechanism in Escherichia coli ptrB mediated by a 5' -terminal AUG. J Bacteriol (2017) 0.77

DAMBE6: New tools for microbial genomics, phylogenetics and molecular evolution. J Hered (2017) 0.75

How Changes in Anti-SD Sequences Would Affect SD Sequences in Escherichia coli and Bacillus subtilis. G3 (Bethesda) (2017) 0.75

The RNA ligase RtcB reverses MazF-induced ribosome heterogeneity in Escherichia coli. Nucleic Acids Res (2016) 0.75

Recurrent RNA motifs as probes for studying RNA-protein interactions in the ribosome. Nucleic Acids Res (2010) 0.75

Synthetic biology: Ribosomal ties that bind. Nature (2015) 0.75

Rapid generation of hypomorphic mutations. Nat Commun (2017) 0.75

Detection and Quantification of Ribosome Inhibition by Aminoglycoside Antibiotics in Living Bacteria Using an Orthogonal Ribosome-Controlled Fluorescent Reporter. ACS Chem Biol (2015) 0.75

Use of Baby Spinach and Broccoli for imaging of structured cellular RNAs. Nucleic Acids Res (2017) 0.75

Articles cited by this

Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (1970) 1528.65

The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. Proc Natl Acad Sci U S A (1974) 62.91

Comparison of initiation of protein synthesis in procaryotes, eucaryotes, and organelles. Microbiol Rev (1983) 24.58

Translational initiation in prokaryotes. Annu Rev Microbiol (1981) 18.46

How ribosomes select initiator regions in mRNA: base pair formation between the 3' terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli. Proc Natl Acad Sci U S A (1975) 10.60

Antibiotic resistance mutations in 16S and 23S ribosomal RNA genes of Escherichia coli. Nucleic Acids Res (1984) 3.94

Feedback regulation of rRNA and tRNA synthesis and accumulation of free ribosomes after conditional expression of rRNA genes. Proc Natl Acad Sci U S A (1985) 3.16

Mutations of bacteriophage T7 that affect initiation of synthesis of the gene 0.3 protein. Proc Natl Acad Sci U S A (1978) 3.11

A single base change in the Shine-Dalgarno region of 16S rRNA of Escherichia coli affects translation of many proteins. Proc Natl Acad Sci U S A (1987) 2.62

Mutations that affect lamB gene expression at a posttranscriptional level. Proc Natl Acad Sci U S A (1981) 2.46

Sequence, modified nucleotides and secondary structure at the 3'-end of small ribosomal subunit RNA. Nucleic Acids Res (1982) 1.58

Analysis in vivo of translational mutants of the rIIB cistron of bacteriophage T4. J Mol Biol (1981) 1.54

Basepairing potential of the 3' terminus of 16S RNA: dependence on the functional state of the 30S subunit and the presence of protein S21. Nucleic Acids Res (1981) 1.48

Portable Shine-Dalgarno regions: a system for a systematic study of defined alterations of nucleotide sequences within E. coli ribosome binding sites. DNA (1983) 1.48

Effects of site-directed mutations in the central domain of 16 S ribosomal RNA upon ribosomal protein binding, RNA processing and 30 S subunit assembly. J Mol Biol (1984) 1.14

Basepairing of oligonucleotides to the 3' end of 16S ribosomal RNA is not stabilized by ribosomal proteins. Nucleic Acids Res (1984) 0.95

Articles by these authors

The tac promoter: a functional hybrid derived from the trp and lac promoters. Proc Natl Acad Sci U S A (1983) 9.95

DNA determinants of rRNA synthesis in E. coli: growth rate dependent regulation, feedback inhibition, upstream activation, antitermination. Cell (1986) 5.08

DNA sequences of promoter regions for rRNA operons rrnE and rrnA in E. coli. Cell (1979) 4.39

T-cell co-stimulation through B7RP-1 and ICOS. Nature (1999) 4.20

Compilation and comparison of the sequence context around the AUG startcodons in Saccharomyces cerevisiae mRNAs. Nucleic Acids Res (1987) 3.76

Sequence and expression of mRNAs encoding the alpha 1 and alpha 2 subunits of a DHP-sensitive calcium channel. Science (1988) 3.38

Identification of initiation sites for the in vitro transcription of rRNA operons rrnE and rrnA in E. coli. Cell (1979) 3.00

Influence of the codon following the AUG initiation codon on the expression of a modified lacZ gene in Escherichia coli. EMBO J (1987) 2.46

Growth-rate-dependent regulation of ribosome synthesis in E. coli: expression of the lacZ and galK genes fused to ribosomal promoters. Cell (1981) 2.17

Codon replacement in the PGK1 gene of Saccharomyces cerevisiae: experimental approach to study the role of biased codon usage in gene expression. Mol Cell Biol (1987) 2.06

Mutagenesis of the three bases preceding the start codon of the beta-galactosidase mRNA and its effect on translation in Escherichia coli. EMBO J (1984) 1.94

Lactoferrin is a lipid A-binding protein. Infect Immun (1994) 1.73

Portable Shine-Dalgarno regions: a system for a systematic study of defined alterations of nucleotide sequences within E. coli ribosome binding sites. DNA (1983) 1.48

Formation of the central pseudoknot in 16S rRNA is essential for initiation of translation. EMBO J (1993) 1.44

Spectinomycin interacts specifically with the residues G1064 and C1192 in 16S rRNA, thereby potentially freezing this molecule into an inactive conformation. Nucleic Acids Res (1994) 1.36

Feedback regulation of rRNA synthesis. A mutational alteration in the anti-Shine-Dalgarno region of the 16 S rRNA gene abolishes regulation. J Mol Biol (1987) 1.30

Efficient bacterial expression of bovine and porcine growth hormones. DNA (1983) 1.25

Mutagenesis at the mRNA decoding site in the 16S ribosomal RNA using the specialized ribosome system in Escherichia coli. EMBO J (1988) 1.20

N-terminal stretch Arg2, Arg3, Arg4 and Arg5 of human lactoferrin is essential for binding to heparin, bacterial lipopolysaccharide, human lysozyme and DNA. Biochem J (1997) 1.15

Specific inhibition of ribosomal RNA synthesis in vitro by guanosine 3' diphosphate, 5' diphosphate. Nature (1975) 1.14

Characterization of a new human B7-related protein: B7RP-1 is the ligand to the co-stimulatory protein ICOS. Int Immunol (2000) 1.13

The healing of closed tibial shaft fractures. The natural history of union with closed treatment. J Bone Joint Surg Br (1988) 1.12

A hybrid promoter and portable Shine-Dalgarno regions of Escherichia coli. Biochem Soc Symp (1983) 1.07

Glycosylated and unglycosylated human lactoferrins both bind iron and show identical affinities towards human lysozyme and bacterial lipopolysaccharide, but differ in their susceptibilities towards tryptic proteolysis. Biochem J (1995) 1.05

A versatile plasmid system for the study of prokaryotic transcription signals in Escherichia coli. Gene (1984) 1.03

Mutational analysis of the conserved domains of a T-region border repeat of Agrobacterium tumefaciens. Plant Mol Biol (1989) 1.02

Directing ribosomes to a single mRNA species: a method to study ribosomal RNA mutations and their effects on translation of a single messenger in Escherichia coli. Methods Enzymol (1987) 1.02

DNA hypermethylation at the D17S5 locus is associated with gastric carcinogenesis. Cancer Lett (1998) 0.96

Structure and expression of the mouse casein gene locus. Mamm Genome (1997) 0.95

Social prescribing through arts on prescription in a U.K. city: participants' perspectives (part 1). Public Health (2012) 0.94

Role of the ribosome in stringent control of bacterial RNA synthesis. Biochim Biophys Acta (1971) 0.94

Pneumocystis carinii pneumonia in the acquired immunodeficiency syndrome (AIDS). Diagnosis with bronchial brushings, biopsy, and bronchoalveolar lavage. Chest (1985) 0.93

Separation of mutant and wild-type ribosomes based on differences in their anti Shine-Dalgarno sequence. Nucleic Acids Res (1993) 0.91

Porcine intestinal calcium-binding protein. Molecular properties and the effect of binding calcium ions. J Biol Chem (1974) 0.91

Sequences within ribosome binding site affecting messenger RNA translatability and method to direct ribosomes to single messenger RNA species. Methods Enzymol (1990) 0.91

Heterogeneity in utilization of N-glycosylation sites Asn624 and Asn138 in human lactoferrin: a study with glycosylation-site mutants. Biochem J (1996) 0.90

Fetal cardiac tumor: a prenatal echocardiographic marker for tuberous sclerosis. Am J Obstet Gynecol (1987) 0.88

A phase I/II trial of celecoxib with chemotherapy and radiotherapy in the treatment of patients with locally advanced oesophageal cancer. Invest New Drugs (2006) 0.86

High-performance liquid chromatographic determination of polysorbate 80 in pharmaceutical suspensions. J Chromatogr A (2003) 0.86

The use of penicillocarboxypeptidase-S1 in amino acid sequencing. Arch Biochem Biophys (1974) 0.86

Characterization of cDNA clones encoding two putative isoforms of the alpha 1 subunit of the dihydropyridine-sensitive voltage-dependent calcium channel isolated from rat brain and rat aorta. FEBS Lett (1989) 0.86

Expression of human lactoferrin in milk of transgenic mice. Transgenic Res (1994) 0.85

Lymphocyte homing and Ig secretion in the murine mammary gland. Scand J Immunol (2001) 0.84

Portable Shine-Dalgarno regions; nucleotides between the Shine-Dalgarno sequence and the start codon affect the translation efficiency. Gene Amplif Anal (1983) 0.84

Characterization of recombinant human lactoferrin secreted in milk of transgenic mice. J Biol Chem (1997) 0.84

No improvement in lung cancer care: the management of lung cancer in 1996 and 2002 in New South Wales. Intern Med J (2008) 0.83

Induction and augmentation of mitogen-induced immune interferon production in human peripheral blood lymphocytes by N alpha-desacetylthymosin alpha 1. Eur J Immunol (1982) 0.83

The sequence of ppGpp and pppGpp in the reaction scheme for magic spot synthesis. Biochim Biophys Acta (1976) 0.82

Specialized ribosomes: highly specific translation in vivo of a single targetted mRNA species. Gene (1995) 0.82

A rapid sensitive assay for the quantitation of elastin. Connect Tissue Res (1984) 0.82

Specialized ribosomes allow for the study of mutations in functionally important regions in 16 S rRNA, without affecting cell growth. The identification of functional regions in the central domain of 16S rRNA. J Mol Biol (1994) 0.81

Efficient generation of functional transgenes by homologous recombination in murine zygotes. Nucleic Acids Res (1992) 0.81

Selective area tuberculosis surveys in Singapore 1978. Ann Acad Med Singapore (1981) 0.81

Organization of the bovine casein gene locus. Mamm Genome (1997) 0.79

High-level expression of bovine alpha s1-casein in milk of transgenic mice. Transgenic Res (1998) 0.79

Expression of cDNA-encoded human acid alpha-glucosidase in milk of transgenic mice. Biochim Biophys Acta (1996) 0.79

Expression analysis of the individual bovine beta-, alpha s2- and kappa-casein genes in transgenic mice. Biochem J (1995) 0.79

Synthesis of guanosine 5'-diphosphate, 3'-diphosphate in spot mutants of Escherichia coli. Biochim Biophys Acta (1977) 0.78

Arts In-Reach: taking 'bricks off shoulders' in adult mental health inpatient care. J Psychiatr Ment Health Nurs (2011) 0.78

Strategies for optimizing foreign gene expression in Escherichia coli. Horiz Biochem Biophys (1983) 0.78

Physical map and localization of the human casein gene locus. Mamm Genome (1997) 0.78

Expression of a functional mouse-human chimeric anti-CD19 antibody in the milk of transgenic mice. Transgenic Res (2000) 0.78

Bidirectional transfer from a 24 bp border repeat of Agrobacterium tumefaciens. Nucleic Acids Res (1988) 0.77

Over-expression of the murine polymeric immunoglobulin receptor gene in the mammary gland of transgenic mice. Transgenic Res (1999) 0.77

Intact lung cytochrome P-450 is not required for hypoxic pulmonary vasoconstriction. Am J Physiol (1992) 0.76

Successful epilepsy surgery in catastrophic postencephalitic epilepsy. Neurology (2000) 0.75

Don't block the new kids. Australas Radiol (1999) 0.75

Social prescribing through arts on prescription in a U.K. city: referrers' perspectives (part 2). Public Health (2012) 0.75

Folding and purification of a recombinantly expressed interferon regulatory factor, IRF-4. Protein Expr Purif (1999) 0.75

Clinical features and glomerular immunofluorescence of renal biopsies from children with nephrotic syndrome due to minimal change disease and two variants of mesangial proliferative glomerulonephritis. Int J Pediatr Nephrol (1984) 0.75

Altered p21(WAF1/CIP1) expression is associated with poor prognosis in extrahepatic bile duct carcinoma. Cancer Lett (2000) 0.75

Persistent synovial fistula after arthroscopy in carbon synovitis. ANZ J Surg (2001) 0.75

Clinical findings, imaging characteristics and outcome in catastrophic post-encephalitic epilepsy. Epileptic Disord (2000) 0.75

Experiences and constructions of art: a narrative-discourse analysis. J Psychiatr Ment Health Nurs (2007) 0.75

Analysis of rRNA function using specialized ribosomes. Methods Mol Biol (1998) 0.75

Cloning and characterization of the bovine polymeric immunoglobulin receptor-encoding cDNA. Gene (1995) 0.75

The role of messenger RNA and peptidyl-tRNA in the synthesis of the guanine nucleotides MS I and MS II by ribosomes in vivo. FEBS Lett (1973) 0.75

A radiological technique for the assessment of wear in prosthetic knee replacements. Skeletal Radiol (2000) 0.75

Kinetics of first polar body extrusion and the effect of time of stripping of the cumulus and time of insemination on developmental competence of bovine oocytes. Theriogenology (1994) 0.75

Over-expression of the murine pIgR gene in the mammary gland of transgenic mice influences the milk composition and reduces its nutritional value. Transgenic Res (2001) 0.75

Effect of trimethoprim administration on hepatic functions of albino rats. Acta Physiol Pharmacol Bulg (1984) 0.75