Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease.

PubWeight™: 3.72‹?› | Rank: Top 1%

🔗 View Article (PMC 4176945)

Published in Nature on July 27, 2014

Authors

Carolin Anders1, Ole Niewoehner1, Alessia Duerst1, Martin Jinek1

Author Affiliations

1: Department of Biochemistry, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland.

Articles citing this

(truncated to the top 100)

Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex. Nature (2014) 5.19

Engineered CRISPR-Cas9 nucleases with altered PAM specificities. Nature (2015) 3.77

High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects. Nature (2016) 3.54

Rationally engineered Cas9 nucleases with improved specificity. Science (2015) 3.14

Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA. Nat Biotechnol (2016) 2.34

New CRISPR-Cas systems from uncultivated microbes. Nature (2016) 2.22

Structures of a CRISPR-Cas9 R-loop complex primed for DNA cleavage. Science (2016) 1.95

Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems. Mol Cell (2015) 1.89

CRISPR-Cas immunity in prokaryotes. Nature (2015) 1.75

Cas9 specifies functional viral targets during CRISPR-Cas adaptation. Nature (2015) 1.70

Dramatic enhancement of genome editing by CRISPR/Cas9 through improved guide RNA design. Genetics (2015) 1.52

Broadening the targeting range of Staphylococcus aureus CRISPR-Cas9 by modifying PAM recognition. Nat Biotechnol (2015) 1.41

Genome-editing Technologies for Gene and Cell Therapy. Mol Ther (2016) 1.41

Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA. Cell (2016) 1.41

Crystal Structure of Staphylococcus aureus Cas9. Cell (2015) 1.40

The crystal structure of Cpf1 in complex with CRISPR RNA. Nature (2016) 1.35

Conformational control of DNA target cleavage by CRISPR-Cas9. Nature (2015) 1.35

Applications of CRISPR technologies in research and beyond. Nat Biotechnol (2016) 1.34

Rational design of a split-Cas9 enzyme complex. Proc Natl Acad Sci U S A (2015) 1.30

Photoactivatable CRISPR-Cas9 for optogenetic genome editing. Nat Biotechnol (2015) 1.28

Cas9 function and host genome sampling in Type II-A CRISPR-Cas adaptation. Genes Dev (2015) 1.27

Off-target Effects in CRISPR/Cas9-mediated Genome Engineering. Mol Ther Nucleic Acids (2015) 1.23

Multigene editing in the Escherichia coli genome via the CRISPR-Cas9 system. Appl Environ Microbiol (2015) 1.21

Nucleosomes impede Cas9 access to DNA in vivo and in vitro. Elife (2016) 1.20

Structural Plasticity of PAM Recognition by Engineered Variants of the RNA-Guided Endonuclease Cas9. Mol Cell (2016) 1.19

Mechanism of foreign DNA recognition by a CRISPR RNA-guided surveillance complex from Pseudomonas aeruginosa. Nucleic Acids Res (2015) 1.17

Structural biology. Structures of the CRISPR-Cmr complex reveal mode of RNA target positioning. Science (2015) 1.15

Efficient inversions and duplications of mammalian regulatory DNA elements and gene clusters by CRISPR/Cas9. J Mol Cell Biol (2015) 1.07

The structural biology of CRISPR-Cas systems. Curr Opin Struct Biol (2015) 1.07

Structural basis for promiscuous PAM recognition in type I-E Cascade from E. coli. Nature (2016) 1.05

A Conserved Structural Chassis for Mounting Versatile CRISPR RNA-Guided Immune Responses. Mol Cell (2015) 1.04

Defining and improving the genome-wide specificities of CRISPR-Cas9 nucleases. Nat Rev Genet (2016) 1.03

Long-term dual-color tracking of genomic loci by modified sgRNAs of the CRISPR/Cas9 system. Nucleic Acids Res (2016) 0.99

The CRISPR/Cas Genome-Editing Tool: Application in Improvement of Crops. Front Plant Sci (2016) 0.99

Synthetic epigenetics-towards intelligent control of epigenetic states and cell identity. Clin Epigenetics (2015) 0.99

Targeted mutagenesis in soybean using the CRISPR-Cas9 system. Sci Rep (2015) 0.98

Optimizing sgRNA structure to improve CRISPR-Cas9 knockout efficiency. Genome Biol (2015) 0.97

Creating and evaluating accurate CRISPR-Cas9 scalpels for genomic surgery. Nat Methods (2015) 0.96

Highly efficient primed spacer acquisition from targets destroyed by the Escherichia coli type I-E CRISPR-Cas interfering complex. Proc Natl Acad Sci U S A (2016) 0.94

Profiling of engineering hotspots identifies an allosteric CRISPR-Cas9 switch. Nat Biotechnol (2016) 0.94

Modulating the Cascade architecture of a minimal Type I-F CRISPR-Cas system. Nucleic Acids Res (2016) 0.94

Rapid characterization of CRISPR-Cas9 protospacer adjacent motif sequence elements. Genome Biol (2015) 0.93

Efficient Multiple Genome Modifications Induced by the crRNAs, tracrRNA and Cas9 Protein Complex in Zebrafish. PLoS One (2015) 0.93

Synthesis of an arrayed sgRNA library targeting the human genome. Sci Rep (2015) 0.93

DSSR: an integrated software tool for dissecting the spatial structure of RNA. Nucleic Acids Res (2015) 0.92

In Vivo CRISPR/Cas9 Gene Editing Corrects Retinal Dystrophy in the S334ter-3 Rat Model of Autosomal Dominant Retinitis Pigmentosa. Mol Ther (2015) 0.92

Methods for Optimizing CRISPR-Cas9 Genome Editing Specificity. Mol Cell (2016) 0.91

Enabling functional genomics with genome engineering. Genome Res (2015) 0.90

Cas9 Variants Expand the Target Repertoire in Caenorhabditis elegans. Genetics (2015) 0.90

Cas9-based genome editing in Xenopus tropicalis. Methods Enzymol (2014) 0.89

Identifying and Visualizing Functional PAM Diversity across CRISPR-Cas Systems. Mol Cell (2016) 0.89

Mechanism of CRISPR-RNA guided recognition of DNA targets in Escherichia coli. Nucleic Acids Res (2015) 0.88

DNA-binding-domain fusions enhance the targeting range and precision of Cas9. Nat Methods (2015) 0.88

Structure and Engineering of Francisella novicida Cas9. Cell (2016) 0.88

In vitro enzymology of Cas9. Methods Enzymol (2014) 0.87

Pharmacological inhibition of DNA-PK stimulates Cas9-mediated genome editing. Genome Med (2015) 0.87

Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage. Nucleic Acids Res (2015) 0.86

DNase H Activity of Neisseria meningitidis Cas9. Mol Cell (2015) 0.85

"Off-Spotter": very fast and exhaustive enumeration of genomic lookalikes for designing CRISPR/Cas guide RNAs. Biol Direct (2015) 0.84

Probing the impact of chromatin conformation on genome editing tools. Nucleic Acids Res (2016) 0.84

Sequence features associated with the cleavage efficiency of CRISPR/Cas9 system. Sci Rep (2016) 0.84

Consequences of Cas9 cleavage in the chromosome of Escherichia coli. Nucleic Acids Res (2016) 0.84

Applications of CRISPR-Cas9 mediated genome engineering. Mil Med Res (2015) 0.84

Streptococcus thermophilus CRISPR-Cas9 Systems Enable Specific Editing of the Human Genome. Mol Ther (2015) 0.84

The therapeutic application of CRISPR/Cas9 technologies for HIV. Expert Opin Biol Ther (2015) 0.83

A Biophysical Model of CRISPR/Cas9 Activity for Rational Design of Genome Editing and Gene Regulation. PLoS Comput Biol (2016) 0.83

Data-collection strategy for challenging native SAD phasing. Acta Crystallogr D Struct Biol (2016) 0.83

Type V CRISPR-Cas Cpf1 endonuclease employs a unique mechanism for crRNA-mediated target DNA recognition. Cell Res (2016) 0.82

Engineering canker-resistant plants through CRISPR/Cas9-targeted editing of the susceptibility gene CsLOB1 promoter in citrus. Plant Biotechnol J (2017) 0.82

Multigene disruption in undomesticated Bacillus subtilis ATCC 6051a using the CRISPR/Cas9 system. Sci Rep (2016) 0.81

Real-time observation of DNA recognition and rejection by the RNA-guided endonuclease Cas9. Nat Commun (2016) 0.81

Target DNA recognition and cleavage by a reconstituted Type I-G CRISPR-Cas immune effector complex. Extremophiles (2016) 0.81

Structural roles of guide RNAs in the nuclease activity of Cas9 endonuclease. Nat Commun (2016) 0.81

CRISPR/Cas9 Editing of the Mutant Huntingtin Allele In Vitro and In Vivo. Mol Ther (2017) 0.80

In Vitro Reconstitution and Crystallization of Cas9 Endonuclease Bound to a Guide RNA and a DNA Target. Methods Enzymol (2015) 0.80

Structure Principles of CRISPR-Cas Surveillance and Effector Complexes. Annu Rev Biophys (2015) 0.80

Cpf1 nucleases demonstrate robust activity to induce DNA modification by exploiting homology directed repair pathways in mammalian cells. Biol Direct (2016) 0.79

CRISPR/CAS9-Mediated Genome Editing of miRNA-155 Inhibits Proinflammatory Cytokine Production by RAW264.7 Cells. Biomed Res Int (2015) 0.79

Striking Plasticity of CRISPR-Cas9 and Key Role of Non-target DNA, as Revealed by Molecular Simulations. ACS Cent Sci (2016) 0.79

CRISPR/Cas9: molecular tool for gene therapy to target genome and epigenome in the treatment of lung cancer. Cancer Gene Ther (2015) 0.79

Cas9 Functionally Opens Chromatin. PLoS One (2016) 0.79

PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease. Cell (2016) 0.79

CIRCLE-seq: a highly sensitive in vitro screen for genome-wide CRISPR-Cas9 nuclease off-targets. Nat Methods (2017) 0.78

Salient Features of Endonuclease Platforms for Therapeutic Genome Editing. Mol Ther (2016) 0.78

Mutations in Cas9 Enhance the Rate of Acquisition of Viral Spacer Sequences during the CRISPR-Cas Immune Response. Mol Cell (2016) 0.78

The history and market impact of CRISPR RNA-guided nucleases. Curr Opin Virol (2015) 0.78

The Rise of CRISPR/Cas for Genome Editing in Stem Cells. Stem Cells Int (2016) 0.78

Integration and exchange of split dCas9 domains for transcriptional controls in mammalian cells. Nat Commun (2016) 0.78

A decade of discovery: CRISPR functions and applications. Nat Microbiol (2017) 0.77

Nucleic Acid-Dependent Conformational Changes in CRISPR-Cas9 Revealed by Site-Directed Spin Labeling. Cell Biochem Biophys (2016) 0.77

Single-Base Pair Genome Editing in Human Cells by Using Site-Specific Endonucleases. Int J Mol Sci (2015) 0.77

Targeting Non-Coding RNAs in Plants with the CRISPR-Cas Technology is a Challenge yet Worth Accepting. Front Plant Sci (2015) 0.77

Cas9 loosens its grip on off-target sites. Nat Biotechnol (2016) 0.77

Minimizing off-Target Mutagenesis Risks Caused by Programmable Nucleases. Int J Mol Sci (2015) 0.77

Structural and dynamic views of the CRISPR-Cas system at the single-molecule level. BMB Rep (2016) 0.77

Mapping the genomic landscape of CRISPR-Cas9 cleavage. Nat Methods (2017) 0.76

One-step homozygosity in precise gene editing by an improved CRISPR/Cas9 system. Cell Res (2016) 0.76

The Influence of Copy-Number of Targeted Extrachromosomal Genetic Elements on the Outcome of CRISPR-Cas Defense. Front Mol Biosci (2016) 0.76

Interference activity of a minimal Type I CRISPR-Cas system from Shewanella putrefaciens. Nucleic Acids Res (2015) 0.76

Enzyme kinetics for complex system enables accurate determination of specificity constants of numerous substrates in a mixture by proteomics platform. Mol Cell Proteomics (2016) 0.75

Articles cited by this

Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr (2004) 227.01

PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr (2010) 108.52

XDS. Acta Crystallogr D Biol Crystallogr (2010) 67.46

Multiplex genome engineering using CRISPR/Cas systems. Science (2013) 55.53

RNA-guided human genome engineering via Cas9. Science (2013) 48.29

A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science (2012) 48.17

Molecular replacement with MOLREP. Acta Crystallogr D Biol Crystallogr (2009) 26.26

One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell (2013) 24.00

Efficient genome editing in zebrafish using a CRISPR-Cas system. Nat Biotechnol (2013) 21.32

DNA targeting specificity of RNA-guided Cas9 nucleases. Nat Biotechnol (2013) 19.99

CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature (2011) 17.38

Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc Natl Acad Sci U S A (2012) 16.48

RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol (2013) 15.51

RNA-programmed genome editing in human cells. Elife (2013) 14.82

Automated structure solution with autoSHARP. Methods Mol Biol (2007) 14.67

The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature (2010) 14.21

Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell (2013) 13.43

CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat Biotechnol (2013) 11.35

Towards automated crystallographic structure refinement with phenix.refine. Acta Crystallogr D Biol Crystallogr (2012) 11.31

The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli. Nucleic Acids Res (2011) 10.43

CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes. Cell (2013) 9.55

Genome engineering of Drosophila with the CRISPR RNA-guided Cas9 nuclease. Genetics (2013) 8.56

Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level. Nucleic Acids Res (2001) 7.27

Cas9 as a versatile tool for engineering biology. Nat Methods (2013) 6.87

Heritable genome editing in C. elegans via a CRISPR-Cas9 system. Nat Methods (2013) 5.93

DNA interrogation by the CRISPR RNA-guided endonuclease Cas9. Nature (2014) 5.70

Crystal structure of Cas9 in complex with guide RNA and target DNA. Cell (2014) 5.26

Structures of Cas9 endonucleases reveal RNA-mediated conformational activation. Science (2014) 5.13

Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system. Cell Rep (2013) 4.72

Orthogonal Cas9 proteins for RNA-guided gene regulation and editing. Nat Methods (2013) 4.61

Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system. Nucleic Acids Res (2013) 3.51

Molecular basis of xeroderma pigmentosum group C DNA recognition by engineered meganucleases. Nature (2008) 2.37

Phylogeny of Cas9 determines functional exchangeability of dual-RNA and Cas9 among orthologous type II CRISPR-Cas systems. Nucleic Acids Res (2013) 2.35

MAFFT: iterative refinement and additional methods. Methods Mol Biol (2014) 2.31

Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs. Nucleic Acids Res (2010) 1.58

Lactobacillus buchneri genotyping on the basis of clustered regularly interspaced short palindromic repeat (CRISPR) locus diversity. Appl Environ Microbiol (2013) 0.92