Published in Stem Cell Reports on September 25, 2014
Medial HOXA genes demarcate haematopoietic stem cell fate during human development. Nat Cell Biol (2016) 0.81
Imprinted genes in myeloid lineage commitment in normal and malignant hematopoiesis. Leukemia (2015) 0.76
Linking Hematopoietic Differentiation to Co-Expressed Sets of Pluripotency-Associated and Imprinted Genes and to Regulatory microRNA-Transcription Factor Motifs. PLoS One (2017) 0.75
Bioconductor: open software development for computational biology and bioinformatics. Genome Biol (2004) 143.19
Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res (2003) 103.76
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol (2010) 75.21
Differential expression analysis for sequence count data. Genome Biol (2010) 64.56
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics (2005) 24.04
HTSeq--a Python framework to work with high-throughput sequencing data. Bioinformatics (2014) 23.22
Global quantification of mammalian gene expression control. Nature (2011) 22.36
Long non-coding RNAs: insights into functions. Nat Rev Genet (2009) 19.61
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res (2010) 18.73
A direct measurement of the radiation sensitivity of normal mouse bone marrow cells. Radiat Res (1961) 18.57
A clonogenic common myeloid progenitor that gives rise to all myeloid lineages. Nature (2000) 16.75
Ensembl 2013. Nucleic Acids Res (2012) 11.70
Hematopoietic stem cells reversibly switch from dormancy to self-renewal during homeostasis and repair. Cell (2008) 11.53
Analysis and design of RNA sequencing experiments for identifying isoform regulation. Nat Methods (2010) 10.13
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinformatics (2005) 9.84
RNA sequencing: advances, challenges and opportunities. Nat Rev Genet (2010) 8.96
Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinformatics (2009) 8.87
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. Nat Rev Genet (2012) 8.55
Identification of Flt3+ lympho-myeloid stem cells lacking erythro-megakaryocytic potential a revised road map for adult blood lineage commitment. Cell (2005) 8.37
Bone-marrow haematopoietic-stem-cell niches. Nat Rev Immunol (2006) 7.20
IFNalpha activates dormant haematopoietic stem cells in vivo. Nature (2009) 7.17
Detecting differential usage of exons from RNA-seq data. Genome Res (2012) 6.34
PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways. Nucleic Acids Res (2006) 6.20
Forcing cells to change lineages. Nature (2009) 5.99
c-Myc controls the balance between hematopoietic stem cell self-renewal and differentiation. Genes Dev (2004) 5.83
The hallmarks of cancer: a long non-coding RNA point of view. RNA Biol (2012) 5.60
Two to tango: regulation of Mammalian iron metabolism. Cell (2010) 5.45
Elucidation of the phenotypic, functional, and molecular topography of a myeloerythroid progenitor cell hierarchy. Cell Stem Cell (2007) 5.28
The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. Cancer Res (2012) 5.04
BMP6 is a key endogenous regulator of hepcidin expression and iron metabolism. Nat Genet (2009) 4.84
Non-coding RNAs as regulators of embryogenesis. Nat Rev Genet (2011) 3.36
Is proteomics the new genomics? Cell (2007) 2.92
Limiting factors in murine hematopoietic stem cell assays. Cell Stem Cell (2007) 2.89
Awakening dormant haematopoietic stem cells. Nat Rev Immunol (2010) 2.88
p57(Kip2) and p27(Kip1) cooperate to maintain hematopoietic stem cell quiescence through interactions with Hsc70. Cell Stem Cell (2011) 2.58
Regulation of glycolysis by Pdk functions as a metabolic checkpoint for cell cycle quiescence in hematopoietic stem cells. Cell Stem Cell (2013) 2.58
Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease. Nat Rev Neurosci (2012) 2.52
MEG3 noncoding RNA: a tumor suppressor. J Mol Endocrinol (2012) 2.41
Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis. Nat Cell Biol (2013) 2.40
Hematopoietic stem cell: self-renewal versus differentiation. Wiley Interdiscip Rev Syst Biol Med (2010) 2.38
Maternal imprinting at the H19-Igf2 locus maintains adult haematopoietic stem cell quiescence. Nature (2013) 2.22
Epigenomic profiling of young and aged HSCs reveals concerted changes during aging that reinforce self-renewal. Cell Stem Cell (2014) 2.18
Metabolic regulation by the mitochondrial phosphatase PTPMT1 is required for hematopoietic stem cell differentiation. Cell Stem Cell (2013) 2.12
The H19 locus acts in vivo as a tumor suppressor. Proc Natl Acad Sci U S A (2008) 1.98
Posttranscriptional gene regulation by long noncoding RNA. J Mol Biol (2012) 1.87
More than just proliferation: Myc function in stem cells. Trends Cell Biol (2005) 1.82
Balancing dormant and self-renewing hematopoietic stem cells. Curr Opin Genet Dev (2009) 1.77
Neutrophil elastase, proteinase 3 and cathepsin G: physicochemical properties, activity and physiopathological functions. Biochimie (2007) 1.77
Less is more: unveiling the functional core of hematopoietic stem cells through knockout mice. Cell Stem Cell (2012) 1.71
A novel method for generation of signature networks as biomarkers from complex high throughput data. Toxicol Lett (2005) 1.71
Regulation of hematopoietic stem cells by the steel factor/KIT signaling pathway. Clin Cancer Res (2008) 1.45
Wnt signaling strength regulates normal hematopoiesis and its deregulation is involved in leukemia development. Leukemia (2011) 1.37
Protein expression regulation under oxidative stress. Mol Cell Proteomics (2011) 1.34
Functional roles of human kallikrein-related peptidases. J Biol Chem (2009) 1.33
The transcription factor encyclopedia. Genome Biol (2012) 1.28
I-mfa domain proteins interact with Axin and affect its regulation of the Wnt and c-Jun N-terminal kinase signaling pathways. Mol Cell Biol (2002) 1.20
Transcriptome analysis identifies regulators of hematopoietic stem and progenitor cells. Stem Cell Reports (2013) 1.19
Hematopoietic stem cells: to be or Notch to be. Blood (2012) 1.17
The role of Smad signaling in hematopoiesis and translational hematology. Leukemia (2011) 1.08
Breaking the cell cycle of HSCs by p57 and friends. Cell Stem Cell (2011) 1.04
Developmental fate determination and marker discovery in hematopoietic stem cell biology using proteomic fingerprinting. Mol Cell Proteomics (2007) 0.96
Proteomic cornerstones of hematopoietic stem cell differentiation: distinct signatures of multipotent progenitors and myeloid committed cells. Mol Cell Proteomics (2012) 0.96
This niche is a maze; an amazing niche. Cell Stem Cell (2013) 0.89
Long noncoding RNAs in biology and hematopoiesis. Blood (2013) 0.88
Deeply dissecting stemness: making sense to non-coding RNAs in stem cells. Stem Cell Rev (2012) 0.78