Published in J Allergy Clin Immunol on October 14, 2014
The genetic and epigenetic landscapes of the epithelium in asthma. Respir Res (2016) 0.75
Cultivate Primary Nasal Epithelial Cells from Children and Reprogram into Induced Pluripotent Stem Cells. J Vis Exp (2016) 0.75
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol (2009) 235.12
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell (2006) 120.51
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol (2010) 75.21
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics (2009) 67.17
Embryonic stem cell lines derived from human blastocysts. Science (1998) 65.53
Differential expression analysis for sequence count data. Genome Biol (2010) 64.56
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics (2010) 19.86
Dissecting direct reprogramming through integrative genomic analysis. Nature (2008) 16.47
Epigenetic memory in induced pluripotent stem cells. Nature (2010) 14.31
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature (2011) 13.94
Induced pluripotent stem cells generated without viral integration. Science (2008) 13.38
Parkinson's disease patient-derived induced pluripotent stem cells free of viral reprogramming factors. Cell (2009) 13.02
Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nat Biotechnol (2009) 11.18
Induction of pluripotent stem cells by defined factors is greatly improved by small-molecule compounds. Nat Biotechnol (2008) 10.97
Direct reprogramming of terminally differentiated mature B lymphocytes to pluripotency. Cell (2008) 10.68
Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts. Nat Genet (2009) 10.54
Cell type of origin influences the molecular and functional properties of mouse induced pluripotent stem cells. Nat Biotechnol (2010) 9.24
Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures. Cell Stem Cell (2009) 8.62
Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines. Cell (2011) 8.21
Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming. Nat Biotechnol (2009) 7.59
Modelling schizophrenia using human induced pluripotent stem cells. Nature (2011) 7.41
The Ink4/Arf locus is a barrier for iPS cell reprogramming. Nature (2009) 7.39
A more efficient method to generate integration-free human iPS cells. Nat Methods (2011) 7.39
Neural differentiation of human induced pluripotent stem cells follows developmental principles but with variable potency. Proc Natl Acad Sci U S A (2010) 7.31
How to map billions of short reads onto genomes. Nat Biotechnol (2009) 6.59
Variation in the safety of induced pluripotent stem cell lines. Nat Biotechnol (2009) 6.39
A combined chemical and genetic approach for the generation of induced pluripotent stem cells. Cell Stem Cell (2008) 5.90
Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro. Nature (2010) 5.81
A functionally characterized test set of human induced pluripotent stem cells. Nat Biotechnol (2011) 4.95
Pluripotent stem cells induced from mouse somatic cells by small-molecule compounds. Science (2013) 4.94
Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells. Nat Cell Biol (2011) 4.77
Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells. Cell Stem Cell (2010) 4.59
A chemical platform for improved induction of human iPSCs. Nat Methods (2009) 4.54
Epigenetic memory and preferential lineage-specific differentiation in induced pluripotent stem cells derived from human pancreatic islet beta cells. Cell Stem Cell (2011) 3.73
Using iPSC-derived neurons to uncover cellular phenotypes associated with Timothy syndrome. Nat Med (2011) 3.66
An in vitro model of differentiated human airway epithelia. Methods for establishing primary cultures. Methods Mol Biol (2002) 3.48
Finding consistent patterns: a nonparametric approach for identifying differential expression in RNA-Seq data. Stat Methods Med Res (2011) 3.44
Induced pluripotent stem cells: past, present, and future. Cell Stem Cell (2012) 3.43
Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells. Nat Biotechnol (2011) 3.25
Transcriptional signature and memory retention of human-induced pluripotent stem cells. PLoS One (2009) 3.07
Lab-specific gene expression signatures in pluripotent stem cells. Cell Stem Cell (2010) 2.95
Persistent donor cell gene expression among human induced pluripotent stem cells contributes to differences with human embryonic stem cells. PLoS One (2010) 2.86
The 50- and 58-kdalton keratin classes as molecular markers for stratified squamous epithelia: cell culture studies. J Cell Biol (1983) 2.58
Adenoviral gene delivery can reprogram human fibroblasts to induced pluripotent stem cells. Stem Cells (2009) 2.34
Efficient derivation of purified lung and thyroid progenitors from embryonic stem cells. Cell Stem Cell (2012) 2.33
Altered gene expression profiles in nasal respiratory epithelium reflect stable versus acute childhood asthma. J Allergy Clin Immunol (2005) 2.16
Telomere shortening and loss of self-renewal in dyskeratosis congenita induced pluripotent stem cells. Nature (2011) 2.03
Directed differentiation of human pluripotent stem cells into mature airway epithelia expressing functional CFTR protein. Nat Biotechnol (2012) 1.73
Generation of multipotent lung and airway progenitors from mouse ESCs and patient-specific cystic fibrosis iPSCs. Cell Stem Cell (2012) 1.72
Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cells. Proc Natl Acad Sci U S A (2012) 1.69
Recent stem cell advances: induced pluripotent stem cells for disease modeling and stem cell-based regeneration. Circulation (2010) 1.54
Use of induced pluripotent stem cells to recapitulate pulmonary alveolar proteinosis pathogenesis. Am J Respir Crit Care Med (2014) 1.53
Differences between human embryonic stem cell lines. Hum Reprod Update (2006) 1.48
SAMMate: a GUI tool for processing short read alignments in SAM/BAM format. Source Code Biol Med (2011) 1.47
Redox control of asthma: molecular mechanisms and therapeutic opportunities. Antioxid Redox Signal (2010) 1.43
Ozone, oxidant defense genes, and risk of asthma during adolescence. Am J Respir Crit Care Med (2007) 1.33
Protein transduction from retroviral Gag precursors. Proc Natl Acad Sci U S A (2010) 1.30
Dissecting childhood asthma with nasal transcriptomics distinguishes subphenotypes of disease. J Allergy Clin Immunol (2014) 1.20
Isolation and characterization of human repetin, a member of the fused gene family of the epidermal differentiation complex. J Invest Dermatol (2005) 1.17
Expression and regulation of cornified envelope proteins in human corneal epithelium. Invest Ophthalmol Vis Sci (2006) 1.11
Glutathione redox control of asthma: from molecular mechanisms to therapeutic opportunities. Antioxid Redox Signal (2012) 1.01
Repetin (Rptn), a new member of the "fused gene" subgroup within the S100 gene family encoding a murine epidermal differentiation protein. Genomics (1997) 0.94
Generation of induced pluripotent stem cells from human nasal epithelial cells using a Sendai virus vector. PLoS One (2012) 0.90
Aberrant DNA methylation reprogramming during induced pluripotent stem cell generation is dependent on the choice of reprogramming factors. Cell Regen (Lond) (2014) 0.79
The ANO3/MUC15 locus is associated with eczema in families ascertained through asthma. J Allergy Clin Immunol (2012) 0.78