Published in Front Plant Sci on January 23, 2017
MicroRNAs: target recognition and regulatory functions. Cell (2009) 92.17
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol (2005) 15.10
microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell (2005) 14.81
Control of leaf morphogenesis by microRNAs. Nature (2003) 11.36
Origin, biogenesis, and activity of plant microRNAs. Cell (2009) 9.96
A biochemical framework for RNA silencing in plants. Genes Dev (2003) 9.95
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell (2004) 9.18
P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction. Dev Cell (2003) 8.42
The evolution of gene regulation by transcription factors and microRNAs. Nat Rev Genet (2007) 7.92
A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science (2006) 7.74
Widespread translational inhibition by plant miRNAs and siRNAs. Science (2008) 7.51
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev (2004) 6.69
Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. Proc Natl Acad Sci U S A (2005) 6.09
psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res (2011) 5.45
Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant. Plant Cell (1997) 5.21
Gene regulation by transcription factors and microRNAs. Science (2008) 5.07
Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev (2000) 4.46
Modulation of floral development by a gibberellin-regulated microRNA. Development (2004) 4.31
Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell (2006) 4.06
Systematic evaluation of microRNA processing patterns in tissues, cell lines, and tumors. RNA (2007) 3.91
DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7. Curr Biol (2006) 3.90
MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development. Plant Cell (2005) 3.88
LEAFY COTYLEDON2 encodes a B3 domain transcription factor that induces embryo development. Proc Natl Acad Sci U S A (2001) 3.66
MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell (2005) 3.62
Degradation of microRNAs by a family of exoribonucleases in Arabidopsis. Science (2008) 3.46
Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. Plant Cell (2004) 3.17
The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell (2008) 3.14
Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA (2008) 3.09
A genetic framework for the control of cell division and differentiation in the root meristem. Science (2008) 2.95
Ectopic expression of BABY BOOM triggers a conversion from vegetative to embryonic growth. Plant Cell (2002) 2.95
AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1. Mol Cell (2006) 2.94
Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis. Development (2006) 2.93
The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development. Plant Cell (2005) 2.91
ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination. Plant J (2007) 2.84
The WUSCHEL gene promotes vegetative-to-embryonic transition in Arabidopsis. Plant J (2002) 2.83
Gibberellin regulates Arabidopsis floral development via suppression of DELLA protein function. Development (2004) 2.75
Shoot apical meristem and cotyledon formation during Arabidopsis embryogenesis: interaction among the CUP-SHAPED COTYLEDON and SHOOT MERISTEMLESS genes. Development (1999) 2.68
Biogenesis, turnover, and mode of action of plant microRNAs. Plant Cell (2013) 2.65
Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis. Science (2009) 2.63
AP2/ERF family transcription factors in plant abiotic stress responses. Biochim Biophys Acta (2011) 2.62
A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes. Proc Natl Acad Sci U S A (2005) 2.47
MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatula. Genes Dev (2006) 2.41
Convergence of signaling pathways in the control of differential cell growth in Arabidopsis. Dev Cell (2004) 2.37
LEAFY COTYLEDON1-LIKE defines a class of regulators essential for embryo development. Plant Cell (2003) 2.36
Regulation of LANCEOLATE by miR319 is required for compound-leaf development in tomato. Nat Genet (2007) 2.31
Differential regulation of microRNA stability. RNA (2010) 2.24
Identification of drought-induced microRNAs in rice. Biochem Biophys Res Commun (2007) 2.24
Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages. Plant J (2007) 2.15
The control of developmental phase transitions in plants. Development (2011) 2.09
The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis. Proc Natl Acad Sci U S A (2008) 1.99
Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Plant Cell (2009) 1.98
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell (2010) 1.96
Control of cell proliferation in Arabidopsis thaliana by microRNA miR396. Development (2010) 1.93
bZIP28 and NF-Y transcription factors are activated by ER stress and assemble into a transcriptional complex to regulate stress response genes in Arabidopsis. Plant Cell (2010) 1.92
Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.). BMC Plant Biol (2010) 1.80
MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis. Genes Dev (2010) 1.79
Hormonal interactions in the regulation of plant development. Annu Rev Cell Dev Biol (2012) 1.73
miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis. Proc Natl Acad Sci U S A (2009) 1.73
TCP transcription factors regulate the activities of ASYMMETRIC LEAVES1 and miR164, as well as the auxin response, during differentiation of leaves in Arabidopsis. Plant Cell (2010) 1.67
MicroRNA turnover: when, how, and why. Trends Biochem Sci (2012) 1.55
Expression and maintenance of embryogenic potential is enhanced through constitutive expression of AGAMOUS-Like 15. Plant Physiol (2003) 1.55
ARGONAUTE 1 homeostasis invokes the coordinate action of the microRNA and siRNA pathways. EMBO Rep (2009) 1.54
Temporal control of trichome distribution by microRNA156-targeted SPL genes in Arabidopsis thaliana. Plant Cell (2010) 1.53
The GCR1, GPA1, PRN1, NF-Y signal chain mediates both blue light and abscisic acid responses in Arabidopsis. Plant Physiol (2007) 1.50
MicroRNA networks and developmental plasticity in plants. Trends Plant Sci (2011) 1.50
MicroRNA promoter element discovery in Arabidopsis. RNA (2006) 1.49
Regulation of small RNA accumulation in the maize shoot apex. PLoS Genet (2009) 1.49
GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers. Plant J (2006) 1.48
Overexpression of miR165 affects apical meristem formation, organ polarity establishment and vascular development in Arabidopsis. Plant Cell Physiol (2007) 1.47
Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis. J Exp Bot (2010) 1.43
SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice. Plant Physiol (2009) 1.41
Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis. New Phytol (2011) 1.41
Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor. BMC Mol Biol (2009) 1.37
Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs. Nucleic Acids Res (2009) 1.36
Plant tissue culture media. In Vitro (1976) 1.36
CINCINNATA controls both cell differentiation and growth in petal lobes and leaves of Antirrhinum. Plant Physiol (2004) 1.35
miR393 and secondary siRNAs regulate expression of the TIR1/AFB2 auxin receptor clade and auxin-related development of Arabidopsis leaves. Plant Physiol (2011) 1.34
Leafy cotyledon genes are essential for induction of somatic embryogenesis of Arabidopsis. Planta (2005) 1.33
Auxin controls Arabidopsis adventitious root initiation by regulating jasmonic acid homeostasis. Plant Cell (2012) 1.31
Stress-induced alternative splicing provides a mechanism for the regulation of microRNA processing in Arabidopsis thaliana. Mol Cell (2012) 1.31
Chromatin immunoprecipitation (ChIP) on chip experiments uncover a widespread distribution of NF-Y binding CCAAT sites outside of core promoters. J Biol Chem (2005) 1.30
Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling. FEBS Lett (2009) 1.26
MicroRNAs regulate the timing of embryo maturation in Arabidopsis. Plant Physiol (2011) 1.25
Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis. J Exp Bot (2013) 1.22
Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development. Nucleic Acids Res (2009) 1.19
A putative CCAAT-binding transcription factor is a regulator of flowering timing in Arabidopsis. Plant Physiol (2007) 1.15
Over-expression of microRNA169 confers enhanced drought tolerance to tomato. Biotechnol Lett (2010) 1.13
Gibberellin partly mediates LANCEOLATE activity in tomato. Plant J (2011) 1.08
Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis. Planta (2012) 1.07
Introns of plant pri-miRNAs enhance miRNA biogenesis. EMBO Rep (2013) 1.07
Comparative analysis reveals dynamic changes in miRNAs and their targets and expression during somatic embryogenesis in longan (Dimocarpus longan Lour.). PLoS One (2013) 1.04
Two types of cis-acting elements control the abaxial epidermis-specific transcription of the MIR165a and MIR166a genes. FEBS Lett (2009) 1.03
Jasmonoyl-L-isoleucine hydrolase 1 (JIH1) regulates jasmonoyl-L-isoleucine levels and attenuates plant defenses against herbivores. Plant J (2012) 1.02
NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis. Plant Cell (2013) 1.02
The molecular basis for stress-induced acquisition of somatic embryogenesis. Mol Biol Rep (2009) 1.00
AGAMOUS-Like15 promotes somatic embryogenesis in Arabidopsis and soybean in part by the control of ethylene biosynthesis and response. Plant Physiol (2013) 1.00
Arabidopsis transcription factor genes NF-YA1, 5, 6, and 9 play redundant roles in male gametogenesis, embryogenesis, and seed development. Mol Plant (2012) 0.99
Characterization of expressed sequence tags obtained by SSH during somatic embryogenesis in Cichorium intybus L. BMC Plant Biol (2007) 0.99
Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa). New Phytol (2012) 0.97
Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana. PLoS One (2013) 0.93
Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses. Front Plant Sci (2015) 0.81