Published in Proc Natl Acad Sci U S A on June 24, 2005
Small silencing RNAs: an expanding universe. Nat Rev Genet (2009) 13.88
A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev (2005) 6.04
DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2005) 5.16
Small RNA sorting: matchmaking for Argonautes. Nat Rev Genet (2010) 4.27
Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3. Development (2006) 4.16
Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell (2007) 3.40
Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis. Development (2006) 2.93
Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species. Plant Cell (2006) 2.73
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Res (2008) 2.70
AGO1-miR173 complex initiates phased siRNA formation in plants. Proc Natl Acad Sci U S A (2008) 2.34
Auxin control of root development. Cold Spring Harb Perspect Biol (2010) 2.30
Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis. Proc Natl Acad Sci U S A (2007) 2.28
Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Plant Cell (2009) 1.98
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell (2010) 1.96
Regulatory network of microRNA399 and PHO2 by systemic signaling. Plant Physiol (2008) 1.93
Two small regulatory RNAs establish opposing fates of a developmental axis. Genes Dev (2007) 1.81
Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks. Plant Cell (2013) 1.69
Apple miRNAs and tasiRNAs with novel regulatory networks. Genome Biol (2012) 1.61
AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis. Plant Cell (2006) 1.61
A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159. EMBO J (2009) 1.54
Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa. BMC Plant Biol (2007) 1.50
Auxin signaling. Curr Opin Plant Biol (2006) 1.49
A feedback regulatory module formed by LITTLE ZIPPER and HD-ZIPIII genes. Plant Cell (2007) 1.42
Small regulatory RNAs may sharpen spatial expression patterns. PLoS Comput Biol (2007) 1.32
Oryza sativa dicer-like4 reveals a key role for small interfering RNA silencing in plant development. Plant Cell (2007) 1.30
Ectopic DICER-LIKE1 expression in P1/HC-Pro Arabidopsis rescues phenotypic anomalies but not defects in microRNA and silencing pathways. Plant Cell (2005) 1.28
Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa. Genome Res (2008) 1.28
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biol (2009) 1.19
An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes. Plant Cell (2014) 1.18
Endogenous TasiRNAs mediate non-cell autonomous effects on gene regulation in Arabidopsis thaliana. PLoS One (2009) 1.14
Auxin Response Factor2 (ARF2) and its regulated homeodomain gene HB33 mediate abscisic acid response in Arabidopsis. PLoS Genet (2011) 1.12
Arabidopsis ribosomal proteins control developmental programs through translational regulation of auxin response factors. Proc Natl Acad Sci U S A (2012) 1.12
Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize. BMC Genomics (2011) 1.09
Characterization of the tomato ARF gene family uncovers a multi-levels post-transcriptional regulation including alternative splicing. PLoS One (2014) 1.08
SeqTar: an effective method for identifying microRNA guided cleavage sites from degradome of polyadenylated transcripts in plants. Nucleic Acids Res (2011) 1.06
Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis. EMBO J (2012) 1.06
The Functions of RNA-Dependent RNA Polymerases in Arabidopsis. Arabidopsis Book (2011) 1.05
Genome-wide survey of rice microRNAs and microRNA-target pairs in the root of a novel auxin-resistant mutant. Planta (2009) 1.04
A combined approach of high-throughput sequencing and degradome analysis reveals tissue specific expression of microRNAs and their targets in cucumber. PLoS One (2012) 1.03
MicroRNA superfamilies descended from miR390 and their roles in secondary small interfering RNA Biogenesis in Eudicots. Plant Cell (2013) 1.03
High-throughput sequencing of RNA silencing-associated small RNAs in olive (Olea europaea L.). PLoS One (2011) 1.02
A dual role for the S-locus receptor kinase in self-incompatibility and pistil development revealed by an Arabidopsis rdr6 mutation. Plant Cell (2009) 1.02
Shoot meristem function and leaf polarity: the role of class III HD-ZIP genes. PLoS Genet (2006) 1.00
RNAi in Plants: An Argonaute-Centered View. Plant Cell (2016) 0.98
Time to grow up: the temporal role of smallRNAs in plants. Curr Opin Plant Biol (2005) 0.98
Characterization of microRNAs expression during maize seed development. BMC Genomics (2012) 0.96
Dynamic expression of small RNA populations in larch (Larix leptolepis). Planta (2012) 0.95
Decoding the epigenetic language of plant development. Mol Plant (2010) 0.95
Epigenetics and its implications for plant biology. 1. The epigenetic network in plants. Ann Bot (2005) 0.95
miRNA regulation in the early development of barley seed. BMC Plant Biol (2012) 0.94
MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of Arabidopsis. Plant Mol Biol (2013) 0.92
Gene regulation by non-coding RNAs. Crit Rev Biochem Mol Biol (2013) 0.92
AUXIN RESPONSE FACTOR 3 integrates the functions of AGAMOUS and APETALA2 in floral meristem determinacy. Plant J (2014) 0.89
Genome-wide identification of KANADI1 target genes. PLoS One (2013) 0.88
Novel miR390-dependent transacting siRNA precursors in plants revealed by a PCR-based experimental approach and database analysis. J Biomed Biotechnol (2009) 0.88
Identification of microRNAs in Caragana intermedia by high-throughput sequencing and expression analysis of 12 microRNAs and their targets under salt stress. Plant Cell Rep (2013) 0.87
A link among DNA replication, recombination, and gene expression revealed by genetic and genomic analysis of TEBICHI gene of Arabidopsis thaliana. PLoS Genet (2009) 0.87
Non-cell-autonomous regulation of crucifer self-incompatibility by Auxin Response Factor ARF3. Proc Natl Acad Sci U S A (2012) 0.85
APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J Exp Bot (2014) 0.84
A Review of Auxin Response Factors (ARFs) in Plants. Front Plant Sci (2016) 0.83
Solanum lycopersicum AUXIN RESPONSE FACTOR 9 regulates cell division activity during early tomato fruit development. J Exp Bot (2015) 0.83
Meta-analyses of microarrays of Arabidopsis asymmetric leaves1 (as1), as2 and their modifying mutants reveal a critical role for the ETT pathway in stabilization of adaxial-abaxial patterning and cell division during leaf development. Plant Cell Physiol (2013) 0.83
Genome-wide identification of non-coding RNAs interacted with microRNAs in soybean. Front Plant Sci (2014) 0.83
Introns targeted by plant microRNAs: a possible novel mechanism of gene regulation. Rice (N Y) (2013) 0.82
The REDUCED LEAFLET genes encode key components of the trans-acting small interfering RNA pathway and regulate compound leaf and flower development in Lotus japonicus. Plant Physiol (2009) 0.82
Sequence variation and selection of small RNAs in domesticated rice. BMC Evol Biol (2010) 0.82
Phytohormone abscisic acid control RNA-dependent RNA polymerase 6 gene expression and post-transcriptional gene silencing in rice cells. Nucleic Acids Res (2007) 0.82
Role of RNA interference (RNAi) in the Moss Physcomitrella patens. Int J Mol Sci (2013) 0.82
AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening. PLoS Genet (2016) 0.80
Transposable element-associated microRNA hairpins produce 21-nt sRNAs integrated into typical microRNA pathways in rice. Funct Integr Genomics (2013) 0.80
Networks controlling seed size in Arabidopsis. Plant Reprod (2015) 0.80
Genome-wide characterization and expression profiling of the AUXIN RESPONSE FACTOR (ARF) gene family in Eucalyptus grandis. PLoS One (2014) 0.80
The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell (2015) 0.80
The exosome and trans-acting small interfering RNAs regulate cuticular wax biosynthesis during Arabidopsis inflorescence stem development. Plant Physiol (2014) 0.80
MicroRNA expression profiles in conventional and micropropagated strawberry (Fragaria x ananassa Duch.) plants. Plant Cell Rep (2009) 0.79
DNA methylation and transcriptomic changes in response to different lights and stresses in 7B-1 male-sterile tomato. PLoS One (2015) 0.78
Biogenesis and Biological Activity of Secondary siRNAs in Plants. Scientifica (Cairo) (2013) 0.78
Micro-regulators of auxin action. Plant Cell Rep (2013) 0.78
A non-radioactive method for small RNA detection by northern blotting. Rice (N Y) (2014) 0.78
Regulatory crosstalk between microRNAs and hormone signalling cascades controls the variation on seed dormancy phenotype at Arabidopsis thaliana seed set. Plant Cell Rep (2017) 0.78
Fine tuning of auxin signaling by miRNAs. Physiol Mol Biol Plants (2008) 0.77
Discovery of Novel Leaf Rust Responsive microRNAs in Wheat and Prediction of Their Target Genes. J Nucleic Acids (2014) 0.76
Transcriptomic Signature of the SHATTERPROOF2 Expression Domain Reveals the Meristematic Nature of Arabidopsis Gynoecial Medial Domain. Plant Physiol (2016) 0.76
Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis. PLoS One (2015) 0.76
Identification of miRNAs and Their Targets in the Liverwort Marchantia polymorpha by Integrating RNA-Seq and Degradome Analyses. Plant Cell Physiol (2016) 0.76
Transcriptome-Wide Discovery of PASRs (Promoter-Associated Small RNAs) and TASRs (Terminus-Associated Small RNAs) in Arabidopsis thaliana. PLoS One (2017) 0.75
ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response. BMC Biol (2015) 0.75
MicroRNAs Are Intensively Regulated during Induction of Somatic Embryogenesis in Arabidopsis. Front Plant Sci (2017) 0.75
Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice. Sci Rep (2016) 0.75
A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis. Biol Open (2016) 0.75
Predicted trans-acting siRNAs in the human brain. Int J Mol Sci (2015) 0.75
MicroRNAs: genomics, biogenesis, mechanism, and function. Cell (2004) 198.59
Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res (2003) 77.89
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science (2001) 44.16
MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet (2004) 37.83
Identification of tissue-specific microRNAs from mouse. Curr Biol (2002) 34.55
Asymmetry in the assembly of the RNAi enzyme complex. Cell (2003) 22.18
A uniform system for microRNA annotation. RNA (2003) 20.28
MicroRNAs in plants. Genes Dev (2002) 20.12
Prediction of plant microRNA targets. Cell (2002) 19.20
Functional siRNAs and miRNAs exhibit strand bias. Cell (2003) 19.15
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science (2002) 18.37
The microRNAs of Caenorhabditis elegans. Genes Dev (2003) 17.70
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol (2002) 15.13
microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell (2005) 14.81
Phylogenetic shadowing and computational identification of human microRNA genes. Cell (2005) 13.24
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell (2004) 12.97
Role of microRNAs in plant and animal development. Science (2003) 12.45
Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes. Plant Cell (2003) 11.69
Empirical analysis of transcriptional activity in the Arabidopsis genome. Science (2003) 11.62
Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. RNA (2004) 11.52
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science (2003) 11.43
Control of leaf morphogenesis by microRNAs. Nature (2003) 11.36
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell (2004) 9.18
SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes Dev (2004) 8.18
Sequence-specific inhibition of microRNA- and siRNA-induced RNA silencing. RNA (2004) 7.71
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Cell (2004) 7.68
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet (2004) 6.34
The role of RNA interference in heterochromatic silencing. Nature (2004) 4.56
Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. Plant Cell (2005) 4.41
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc Natl Acad Sci U S A (2004) 3.97
The developmental role of microRNA in plants. Curr Opin Plant Biol (2005) 3.81
In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA. Genes Dev (2004) 3.77
Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biol (2004) 3.66
ASRP: the Arabidopsis Small RNA Project Database. Nucleic Acids Res (2005) 3.46
ETTIN patterns the Arabidopsis floral meristem and reproductive organs. Development (1997) 2.90
Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res (2005) 2.86
Gene regulation: ancient microRNA target sequences in plants. Nature (2004) 2.61
Auxin and ETTIN in Arabidopsis gynoecium morphogenesis. Development (2000) 2.31
Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design. J Biol Chem (2004) 2.01
MicroRNAs: something important between the genes. Curr Opin Plant Biol (2004) 1.68
Identification of 20 microRNAs from Oryza sativa. Nucleic Acids Res (2004) 1.61
HUA1, a regulator of stamen and carpel identities in Arabidopsis, codes for a nuclear RNA binding protein. Plant Cell (2001) 1.54
Arabidopsis epigenetics: when RNA meets chromatin. Curr Opin Plant Biol (2005) 1.05
MicroRNAs: a role in plant development. Curr Biol (2003) 1.04
Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa. Acta Biochim Biophys Sin (Shanghai) (2005) 1.03
Use of high specific activity StarFire oligonucleotide probes to visualize low-abundance pre-mRNA splicing intermediates in S. pombe. Biotechniques (2000) 1.00
Molecular mechanisms of flower development: an armchair guide. Nat Rev Genet (2005) 2.61
CLV3 is localized to the extracellular space, where it activates the Arabidopsis CLAVATA stem cell signaling pathway. Plant Cell (2002) 2.52
Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes. Development (2005) 2.24
The Arabidopsis CLV3-like (CLE) genes are expressed in diverse tissues and encode secreted proteins. Plant Mol Biol (2003) 1.94
Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development. Proc Natl Acad Sci U S A (2012) 1.83
The E3 ubiquitin ligase BIG BROTHER controls arabidopsis organ size in a dosage-dependent manner. Curr Biol (2006) 1.77
BRX mediates feedback between brassinosteroid levels and auxin signalling in root growth. Nature (2006) 1.59
Shoot apical meristem maintenance: the art of a dynamic balance. Trends Plant Sci (2003) 1.47
Proper regulation of a sperm-specific cis-nat-siRNA is essential for double fertilization in Arabidopsis. Genes Dev (2010) 1.44
Unequal genetic redundancies in Arabidopsis--a neglected phenomenon? Trends Plant Sci (2006) 1.41
Comprehensive analysis of CLE polypeptide signaling gene expression and overexpression activity in Arabidopsis. Plant Physiol (2010) 1.39
Stem cell regulation in the Arabidopsis shoot apical meristem. Curr Opin Plant Biol (2005) 1.37
HANABA TARANU is a GATA transcription factor that regulates shoot apical meristem and flower development in Arabidopsis. Plant Cell (2004) 1.35
BLADE-ON-PETIOLE 1 and 2 control Arabidopsis lateral organ fate through regulation of LOB domain and adaxial-abaxial polarity genes. Plant Cell (2007) 1.29
GASA4, one of the 14-member Arabidopsis GASA family of small polypeptides, regulates flowering and seed development. Plant Cell Physiol (2007) 1.28
BLADE-ON-PETIOLE1 encodes a BTB/POZ domain protein required for leaf morphogenesis in Arabidopsis thaliana. Plant Cell Physiol (2004) 1.23
The SAND domain protein ULTRAPETALA1 acts as a trithorax group factor to regulate cell fate in plants. Genes Dev (2009) 1.17
ULTRAPETALA1 encodes a SAND domain putative transcriptional regulator that controls shoot and floral meristem activity in Arabidopsis. Development (2005) 1.16
Regulation of Arabidopsis embryo and endosperm development by the polypeptide signaling molecule CLE8. Plant Cell (2012) 1.14
BLADE-ON-PETIOLE1 coordinates organ determinacy and axial polarity in arabidopsis by directly activating ASYMMETRIC LEAVES2. Plant Cell (2010) 1.12
RABBIT EARS is a second-whorl repressor of AGAMOUS that maintains spatial boundaries in Arabidopsis flowers. Plant J (2006) 1.07
Maintenance of stem cell populations in plants. Proc Natl Acad Sci U S A (2003) 1.07
The ULTRAPETALA1 gene functions early in Arabidopsis development to restrict shoot apical meristem activity and acts through WUSCHEL to regulate floral meristem determinacy. Genetics (2004) 1.06
Phytohormone collaboration: zooming in on auxin-brassinosteroid interactions. Trends Cell Biol (2007) 1.06
The roles of different CLE domains in Arabidopsis CLE polypeptide activity and functional specificity. Mol Plant (2010) 1.03
Shoot apical meristem form and function. Curr Top Dev Biol (2010) 1.03
Dynamic, auxin-responsive plasma membrane-to-nucleus movement of Arabidopsis BRX. Development (2009) 1.02
The short-rooted phenotype of the brevis radix mutant partly reflects root abscisic acid hypersensitivity. Plant Physiol (2009) 0.98
A qualitative continuous model of cellular auxin and brassinosteroid signaling and their crosstalk. Bioinformatics (2011) 0.94
The ULT1 and ULT2 trxG genes play overlapping roles in Arabidopsis development and gene regulation. Mol Plant (2013) 0.93
Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis. Plant J (2011) 0.91
EMBRYONIC FLOWER1 and ULTRAPETALA1 Act Antagonistically on Arabidopsis Development and Stress Response. Plant Physiol (2013) 0.91
Maintenance of shoot and floral meristem cell proliferation and fate. Plant Physiol (2002) 0.89
The ERECTA receptor kinase regulates Arabidopsis shoot apical meristem size, phyllotaxy and floral meristem identity. Development (2014) 0.89
Control of Arabidopsis leaf morphogenesis through regulation of the YABBY and KNOX families of transcription factors. Genetics (2010) 0.85
Analyzing shoot apical meristem development. Methods Mol Biol (2010) 0.83
Missing links between histones and RNA Pol II arising from SAND? Epigenetics (2010) 0.82
Gene activation and cell fate control in plants: a chromatin perspective. Cell Mol Life Sci (2014) 0.81
Perturbation of Brachypodium distachyon CELLULOSE SYNTHASE A4 or 7 results in abnormal cell walls. BMC Plant Biol (2013) 0.81
Flower development: open questions and future directions. Methods Mol Biol (2014) 0.80
CLE polypeptide signaling gene expression in Arabidopsis embryos. Plant Signal Behav (2011) 0.78
Analyzing floral meristem development. Methods Mol Biol (2010) 0.76
The essential gene EMB1611 maintains shoot apical meristem function during Arabidopsis development. Plant J (2008) 0.76
The ULT trxG factors play a role in Arabidopsis fertilization. Plant Signal Behav (2014) 0.75
The ULTRAPETALA1 trxG factor contributes to patterning the Arabidopsis adaxial-abaxial leaf polarity axis. Plant Signal Behav (2015) 0.75
Genetic and phenotypic analysis of shoot apical and floral meristem development. Methods Mol Biol (2014) 0.75