Enrichment and depletion of Hela topoisomerase I recognition sites among specific types of DNA elements.

PubWeight™: 0.96‹?› | Rank: Top 15%

🔗 View Article (PMC 338504)

Published in Nucleic Acids Res on August 25, 1988

Authors

C Perez-Stable1, C C Shen, C K Shen

Author Affiliations

1: Department of Genetics, University of California, Davis 95616.

Articles cited by this

A new method for sequencing DNA. Proc Natl Acad Sci U S A (1977) 250.51

The locus of sequence-directed and protein-induced DNA bending. Nature (1984) 15.05

Supercoiling of the DNA template during transcription. Proc Natl Acad Sci U S A (1987) 14.25

DNA topoisomerases. Annu Rev Biochem (1981) 13.42

DNA topoisomerases. Annu Rev Biochem (1985) 13.01

Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information. Annu Rev Biochem (1986) 11.03

The chromosomal arrangement of human alpha-like globin genes: sequence homology and alpha-globin gene deletions. Cell (1980) 9.13

Camptothecin induces protein-linked DNA breaks via mammalian DNA topoisomerase I. J Biol Chem (1985) 8.60

The Alu family of dispersed repetitive sequences. Science (1982) 7.90

Repetitive sequences in eukaryotic DNA and their expression. Annu Rev Biochem (1982) 7.72

The origin and evolution of retroposons. Int Rev Cytol (1985) 5.87

Mutations in the gene coding for Escherichia coli DNA topoisomerase I affect transcription and transposition. Proc Natl Acad Sci U S A (1981) 5.60

Direct repeats flank three small nuclear RNA pseudogenes in the human genome. Cell (1981) 4.53

Short interspersed repetitive DNA elements in eucaryotes: transposable DNA elements generated by reverse transcription of RNA pol III transcripts? Cell (1981) 4.37

SINEs and LINEs: highly repeated short and long interspersed sequences in mammalian genomes. Cell (1982) 4.25

Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. melanogaster. Cell (1986) 4.15

Eukaryotic DNA topoisomerases: two forms of type I DNA topoisomerases from HeLa cell nuclei. Proc Natl Acad Sci U S A (1981) 3.98

Replication of simian virus 40 origin-containing DNA in vitro with purified proteins. Proc Natl Acad Sci U S A (1987) 3.97

Human 7SL RNA consists of a 140 nucleotide middle-repetitive sequence inserted in an alu sequence. Cell (1982) 3.74

Need for DNA topoisomerase activity as a swivel for DNA replication for transcription of ribosomal RNA. Nature (1987) 3.56

Interaction between DNA and Escherichia coli protein omega. Formation of a complex between single-stranded DNA and omega protein. J Biol Chem (1978) 3.35

Covalent bonds between protein and DNA. Formation of phosphotyrosine linkage between certain DNA topoisomerases and DNA. J Biol Chem (1980) 3.31

Roles of DNA topoisomerases in simian virus 40 DNA replication in vitro. Proc Natl Acad Sci U S A (1987) 3.21

Strand breakage by the DNA untwisting enzyme results in covalent attachment of the enzyme to DNA. Proc Natl Acad Sci U S A (1977) 3.04

Homology and concerted evolution at the alpha 1 and alpha 2 loci of human alpha-globin. Nature (1981) 2.97

Proteins that affect DNA conformation. Annu Rev Biochem (1978) 2.95

Drosophila DNA topoisomerase I is associated with transcriptionally active regions of the genome. Proc Natl Acad Sci U S A (1984) 2.69

Topoisomerase I interacts with transcribed regions in Drosophila cells. Cell (1986) 2.65

A high affinity topoisomerase I binding sequence is clustered at DNAase I hypersensitive sites in Tetrahymena R-chromatin. Cell (1985) 2.48

Nucleotide sequence preference at rat liver and wheat germ type 1 DNA topoisomerase breakage sites in duplex SV40 DNA. Nucleic Acids Res (1984) 2.37

Involvement of DNA topoisomerase I in transcription of human ribosomal RNA genes. Proc Natl Acad Sci U S A (1988) 2.29

Association of crossover points with topoisomerase I cleavage sites: a model for nonhomologous recombination. Science (1985) 2.26

Escherichia coli type-1 topoisomerases: identification, mechanism, and role in recombination. Cold Spring Harb Symp Quant Biol (1983) 2.22

Molecular evolution of the human adult alpha-globin-like gene region: insertion and deletion of Alu family repeats and non-Alu DNA sequences. Proc Natl Acad Sci U S A (1983) 2.07

Camptothecin-induced in vivo topoisomerase I cleavages in the transcriptionally active tyrosine aminotransferase gene. Cell (1987) 1.90

Eukaryotic type I topoisomerase is enriched in the nucleolus and catalytically active on ribosomal DNA. EMBO J (1985) 1.89

DNA topoisomerases. Cell (1980) 1.82

Recognition sites of eukaryotic DNA topoisomerase I: DNA nucleotide sequencing analysis of topo I cleavage sites on SV40 DNA. Nucleic Acids Res (1982) 1.78

Localization of specific topoisomerase I interactions within the transcribed region of active heat shock genes by using the inhibitor camptothecin. Mol Cell Biol (1987) 1.71

Boundaries of gene conversion within the duplicated human alpha-globin genes. Concerted evolution by segmental recombination. J Biol Chem (1983) 1.69

Intra- and intermolecular strand transfer by HeLa DNA topoisomerase I. J Biol Chem (1982) 1.67

Distinctive sequence organization and functional programming of an Alu repeat promoter. Proc Natl Acad Sci U S A (1984) 1.66

DNA breakage and closure by rat liver type 1 topoisomerase: separation of the half-reactions by using a single-stranded DNA substrate. Proc Natl Acad Sci U S A (1981) 1.62

Integration site preferences of the Alu family and similar repetitive DNA sequences. Nucleic Acids Res (1985) 1.50

Pseudogenes for human U2 small nuclear RNA do not have a fixed site of 3' truncation. Nucleic Acids Res (1984) 1.33

End-to-end transcription of an Alu family repeat. A new type of polymerase-III-dependent terminator and its evolutionary implication. J Mol Biol (1985) 1.27

Role of DNA topoisomerase I in the transcription of supercoiled rRNA gene. Proc Natl Acad Sci U S A (1987) 1.21

DNA structural features that lead to strand breakage by eukaryotic type-I topoisomerase. Cold Spring Harb Symp Quant Biol (1984) 1.16

Sites of topoisomerase I action on X. laevis ribosomal chromatin: transcriptionally active rDNA has an approximately 200 bp repeating structure. Cell (1988) 1.14

The cleavage of DNA by type-I DNA topoisomerases. Cold Spring Harb Symp Quant Biol (1984) 1.12

A gradient of sequence divergence in the human adult alpha-globin duplication units. Science (1984) 1.12

Unwinding associated with synapsis of DNA molecules by recA protein. Proc Natl Acad Sci U S A (1983) 1.10

Sequence specificity of DNA topoisomerase I in the presence and absence of camptothecin. EMBO J (1987) 1.02

Preferential relaxation of supercoiled DNA containing a hexadecameric recognition sequence for topoisomerase I. Nature (1987) 1.00

Topological linkage of circular DNA molecules promoted by Ustilago rec 1 protein and topoisomerase. Cell (1983) 0.90

Articles by these authors

The chromosomal arrangement of human alpha-like globin genes: sequence homology and alpha-globin gene deletions. Cell (1980) 9.13

A high-resolution absolute-dated late Pleistocene Monsoon record from Hulu Cave, China. Science (2001) 5.52

Synthesis and characterization of new psoralen derivatives with superior photoreactivity with DNA and RNA. Biochemistry (1977) 3.68

Tissue-specific DNA methylation in a cluster of rabbit beta-like globin genes. Proc Natl Acad Sci U S A (1980) 2.74

The organization of repetitive sequences in a cluster of rabbit beta-like globin genes. Cell (1980) 2.37

Molecular evolution of the human adult alpha-globin-like gene region: insertion and deletion of Alu family repeats and non-Alu DNA sequences. Proc Natl Acad Sci U S A (1983) 2.07

Carboxyfullerenes as neuroprotective agents. Proc Natl Acad Sci U S A (1997) 2.05

The organization, structure, and in vitro transcription of Alu family RNA polymerase III transcription units in the human alpha-like globin gene cluster: precipitation of in vitro transcripts by lupus anti-La antibodies. J Mol Appl Genet (1982) 1.74

Cross-linking of DNA in situ as a probe for chromatin structure. Science (1976) 1.74

Plasma nitric oxide levels in newborn infants with sepsis. J Pediatr (1993) 1.66

Distinctive sequence organization and functional programming of an Alu repeat promoter. Proc Natl Acad Sci U S A (1984) 1.66

Protein-DNA interactions in vivo of an erythroid-specific, human beta-globin locus enhancer. Proc Natl Acad Sci U S A (1991) 1.59

Psoralen-crosslinked secondary structure map of single-stranded virus DNA. Proc Natl Acad Sci U S A (1976) 1.59

Superhelicity induces hypersensitivity of a human polypyrimidine . polypurine DNA sequence in the human alpha 2-alpha 1 globin intergenic region to S1 nuclease digestion--high resolution mapping of the clustered cleavage sites. Nucleic Acids Res (1983) 1.51

Evolution of Alu family repeats since the divergence of human and chimpanzee. J Mol Evol (1985) 1.47

Genomic footprinting and sequencing of human beta-globin locus. Tissue specificity and cell line artifact. J Biol Chem (1994) 1.41

Vascular dementia of Binswanger's type: clinical, neuroradiological and 99mTc-HMPAO SPET study. Eur J Nucl Med (1996) 1.40

Mapping of sequences with 2-fold symmetry on the simian virus 40 genome: a photochemical crosslinking approach. Proc Natl Acad Sci U S A (1977) 1.40

The chemistry, pharmacology, and clinical applications of qinghaosu (artemisinin) and its derivatives. Med Res Rev (1987) 1.38

The organization of repetitive sequences in mammalian globin gene clusters. Cold Spring Harb Symp Quant Biol (1981) 1.37

The CACC box upstream of human embryonic epsilon globin gene binds Sp1 and is a functional promoter element in vitro and in vivo. J Biol Chem (1991) 1.31

Competitive and cooperative functioning of the anterior and posterior promoter elements of an Alu family repeat. Mol Cell Biol (1986) 1.27

End-to-end transcription of an Alu family repeat. A new type of polymerase-III-dependent terminator and its evolutionary implication. J Mol Biol (1985) 1.27

High-level erythroid-specific gene expression in primary human and murine hematopoietic cells with self-inactivating lentiviral vectors. Blood (2001) 1.19

Current trends in new drug research in the People's Republic of China. Med Res Rev (1984) 1.15

C(60) and water-soluble fullerene derivatives as antioxidants against radical-initiated lipid peroxidation. J Med Chem (1999) 1.14

Cell type-specific protein-DNA interactions in the human zeta-globin upstream promoter region: displacement of Sp1 by the erythroid cell-specific factor NF-E1. Mol Cell Biol (1990) 1.13

A gradient of sequence divergence in the human adult alpha-globin duplication units. Science (1984) 1.12

Intergenic DNA sequences flanking the pseudo alpha globin genes of human and chimpanzee. Nucleic Acids Res (1983) 1.11

Sequence organization and genomic complexity of primate theta 1 globin gene, a novel alpha-globin-like gene. Nature (1986) 1.07

A previously undetected pseudogene in the human alpha globin gene cluster. Nucleic Acids Res (1986) 1.04

Two major forms of DNA (cytosine-5) methyltransferase in human somatic tissues. Proc Natl Acad Sci U S A (1999) 1.02

Cytotoxicity of curcuminoids and some novel compounds from Curcuma zedoaria. J Nat Prod (1998) 1.01

Distinction between AP1 and NF-E2 factor-binding at specific chromatin regions in mammalian cells. Oncogene (1999) 1.01

Isodicentric Y chromosome: cytogenetic, molecular and clinical studies and review of the literature. Hum Genet (1995) 0.99

A specific DNA orientation in the filamentous bacteriophage fd as probed by psoralen crosslinking and electron microscopy. J Mol Biol (1979) 0.97

Erythroid differentiation of mouse erythroleukemia cells results in reorganization of protein-DNA complexes in the mouse beta maj globin promoter but not its distal enhancer. Mol Cell Biol (1993) 0.97

Structure and expression of the human theta 1 globin gene. Nature (1988) 0.97

Unique sequence organization and erythroid cell-specific nuclear factor-binding of mammalian theta 1 globin promoters. Nucleic Acids Res (1989) 0.96

A technique for relating long-range base pairing on single-stranded DNA and eukaryotic RNA processing. Anal Biochem (1979) 0.95

Repeat operations in failed microvascular decompression for trigeminal neuralgia. Neurosurgery (1994) 0.94

Transcriptional activation of human zeta 2 globin promoter by the alpha globin regulatory element (HS-40): functional role of specific nuclear factor-DNA complexes. Mol Cell Biol (1993) 0.93

Evidence that the recently discovered theta 1-globin gene is functional in higher primates. Nature (1987) 0.93

Blockage of apoptotic signaling of transforming growth factor-beta in human hepatoma cells by carboxyfullerene. Eur J Biochem (1998) 0.93

Glial cell-specific differences in response to alkylation damage. Glia (1998) 0.93

Photochemical cross-linking of DNA-RNA helices by psoralen derivatives. J Mol Biol (1977) 0.92

Minimally invasive approaches to treat simultaneous occurrence of glioblastoma multiforme and intracranial aneurysm -- case report. Minim Invasive Neurosurg (2004) 0.91

Specificity and flexibility of the recognition of DNA helical structure by eukaryotic topoisomerase I. J Mol Biol (1990) 0.91

Predicting the synchronization time in coupled-map networks. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 0.90

CACC box and enhancer response of the human embryonic epsilon globin promoter. Gene (1993) 0.89

Relationship of racetrack surface to lameness in the thoroughbred racehorse. Am J Vet Res (1973) 0.88

Sequential insertion of Alu family repeats into specific genomic sites of higher primates. Proc Natl Acad Sci U S A (1993) 0.87

Characterization of an unique RNA initiated immediately upstream from human alpha 1 globin gene in vivo and in vitro: polymerase II-dependence, tissue specificity, and subcellular location. Nucleic Acids Res (1985) 0.87

Photochemical crosslinking of transcription complexes with psoralen. I. Covalent attachment of in vitro SV40 nascent RNA to its double-stranded DNA template. Nucleic Acids Res (1978) 0.87

Antioxidant principles from Ephemerantha lonchophylla. J Nat Prod (1999) 0.86

SRVX, a sex reversing locus in Xp21.2-->p22.11. Hum Genet (1994) 0.85

DNA supercoiling of recombinant plasmids in mammalian cells. Proc Natl Acad Sci U S A (1986) 0.84

The orangutan adult alpha-globin gene locus: duplicated functional genes and a newly detected member of the primate alpha-globin gene family. Proc Natl Acad Sci U S A (1986) 0.84

Association between protective efficacy of antibodies to tumor necrosis factor and suppression of nitric oxide production in neonatal rats with fatal infection. Pediatr Res (1993) 0.83

Derepression of human embryonic zeta-globin promoter by a locus-control region sequence. Proc Natl Acad Sci U S A (1998) 0.83

Loading of DNA-binding factors to an erythroid enhancer. Mol Cell Biol (2000) 0.83

One-codon alternative splicing of the CpG MTase Dnmt1 transcript in mouse somatic cells. FEBS Lett (2000) 0.82

Transcriptional activation of human adult alpha-globin genes by hypersensitive site-40 enhancer: function of nuclear factor-binding motifs occupied in erythroid cells. Proc Natl Acad Sci U S A (1995) 0.82

Purification and properties of 17 beta-hydroxy-C19-steroid dehydrogenases of adult male guinea pig kidney. Endocrinology (1978) 0.81

Functional roles of in vivo footprinted DNA motifs within an alpha-globin enhancer. Erythroid lineage and developmental stage specificities. J Biol Chem (1995) 0.81

Delayed multidose treatment with nicotinamide extends the degree and duration of neuroprotection by reducing infarction and improving behavioral scores up to two weeks following transient focal cerebral ischemia in Wistar rats. Ann N Y Acad Sci (2001) 0.81

Comparison of human and chimpanzee zeta 1 globin genes. J Mol Evol (1985) 0.80

Human ITCH is a coregulator of the hematopoietic transcription factor NF-E2. Genomics (2001) 0.80

Effects of transmit focusing on finite amplitude distortion based second harmonic generation. Ultrason Imaging (1999) 0.80

Chromatin structures of main-band and satellite DNAs in Drosophila melanogaster nuclei as probed by photochemical cross-linking of DNA with trioxsalen. Cold Spring Harb Symp Quant Biol (1978) 0.80

Alu family members in the human alpha-like globin-gene cluster. Cold Spring Harb Symp Quant Biol (1983) 0.78

The adult alpha globin gene loci from monkeys to man: the theta globin subfamily and the alpha globin duplication units in Old World monkeys. Prog Clin Biol Res (1987) 0.78

Tuberculum sellae meningiomas: clinical manifestation, radiologic diagnosis, surgery and visual outcome. Zhonghua Yi Xue Za Zhi (Taipei) (1998) 0.78

Tandemly duplicated alpha globin genes of gibbon. J Biol Chem (1992) 0.78

The adult alpha-globin locus of Old World monkeys: an abrupt breakdown of sequence similarity to human is defined by an Alu family repeat insertion site. J Mol Evol (1991) 0.78

The human alpha 2-alpha 1-theta 1 globin locus: some thoughts and recent studies of its evolution and regulation. Prog Clin Biol Res (1989) 0.77

Differential alteration of catecholamine release during chemical hypoxia is correlated with cell toxicity and is blocked by protein kinase C inhibitors in PC12 cells. J Cell Biochem (2000) 0.77

In vivo binding of trimethylpsoralen detects DNA structural alterations associated with transcribing regions in the human beta-globin cluster. J Biol Chem (1995) 0.77

Reconstruction of human alpha thalassemia-2 genotypes in monkey cells. Nucleic Acids Res (1987) 0.77

Cerebral intraventricular hemorrhage caused by a large cerebral arteriovenous malformation at 31 years after diagnosis. Zhonghua Yi Xue Za Zhi (Taipei) (2001) 0.76

The primate alpha-globin gene family: a paradigm of the fluid genome. Cold Spring Harb Symp Quant Biol (1986) 0.76

Recombinational resolution in primate cells of two homologous human DNA segments with a gradient of sequence divergence. Nucleic Acids Res (1988) 0.76

Molecular origin of the mosaic sequence arrangements of higher primate alpha-globin duplication units. Proc Natl Acad Sci U S A (1997) 0.75

Anomalous and selective DNA mutations of the Old World monkey alpha-globin genes. Proc Natl Acad Sci U S A (1989) 0.75

DNA methylation: its possible functional roles in developmental regulation of human globin gene families. EXS (1993) 0.75

Preparation of dog kidney high-affinity cAMP phosphodiesterase. Methods Enzymol (1988) 0.75

The induction, purification and characterization of 17 beta-hydroxy-C19-steroid dehydrogenase of the female guinea pig kidney. J Steroid Biochem (1979) 0.75

Doppler angle estimation using correlation. IEEE Trans Ultrason Ferroelectr Freq Control (2000) 0.75

Studies on the use of oral live poliovirus vaccine. Paediatr Indones (1967) 0.75

Os odontoideum: a case report and review. Zhonghua Yi Xue Za Zhi (Taipei) (1998) 0.75

Endoscope-assisted microsurgery for treatment of a suprasellar craniopharyngioma presenting precocious puberty. Pediatr Neurosurg (2001) 0.75

Free vascularised bone graft using microvascular technique. Ann Acad Med Singapore (1979) 0.75

A novel agarofuran sesquiterpene, celahin D from Celastrus hindsii Benth. Chem Pharm Bull (Tokyo) (2000) 0.75

Antioxidant Principles from Ephemerantha lonchophylla. J Nat Prod (2000) 0.75

New prenylflavones from the leaves of Epimedium saggitatum. J Nat Prod (1996) 0.75

[Steroid hormones. 3. Dehydrogenation of hecogenin acetate and related synthesis]. Yao Xue Xue Bao (1964) 0.75