Published in J Bacteriol on March 01, 1993
Molecular cloning and characterization of acrA and acrE genes of Escherichia coli. J Bacteriol (1993) 6.24
Linkage map of Escherichia coli K-12, edition 10: the traditional map. Microbiol Mol Biol Rev (1998) 4.18
Promoters responsive to DNA bending: a common theme in prokaryotic gene expression. Microbiol Rev (1994) 3.81
Topological domain structure of the Escherichia coli chromosome. Genes Dev (2004) 3.30
Mechanism of transcriptional bursting in bacteria. Cell (2014) 2.71
Morphogenesis of Escherichia coli. Microbiol Mol Biol Rev (1998) 2.61
Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli. Genome Biol (2004) 2.60
Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli. Genes Dev (1997) 2.12
Mitochondrial translation and beyond: processes implicated in combined oxidative phosphorylation deficiencies. J Biomed Biotechnol (2010) 2.01
Does RNA polymerase help drive chromosome segregation in bacteria? Proc Natl Acad Sci U S A (2002) 2.01
Kinetics of expression of the Escherichia coli cad operon as a function of pH and lysine. J Bacteriol (1996) 1.85
Surveying a supercoil domain by using the gamma delta resolution system in Salmonella typhimurium. J Bacteriol (1996) 1.58
Organization of supercoil domains and their reorganization by transcription. Mol Microbiol (2005) 1.55
Transcription-induced barriers to supercoil diffusion in the Salmonella typhimurium chromosome. Proc Natl Acad Sci U S A (2004) 1.37
Specific interaction of IHF with RIBs, a class of bacterial repetitive DNA elements located at the 3' end of transcription units. EMBO J (1993) 1.25
The physiological contribution of Acinetobacter PcaK, a transport system that acts upon protocatechuate, can be masked by the overlapping specificity of VanK. J Bacteriol (1999) 1.07
Functional taxonomy of bacterial hyperstructures. Microbiol Mol Biol Rev (2007) 1.07
Endogenous fluctuations of DNA topology in the chloroplast of Chlamydomonas reinhardtii. Mol Cell Biol (1998) 1.06
Nucleoid occlusion prevents cell division during replication fork arrest in Bacillus subtilis. Mol Microbiol (2010) 1.04
Transcription-coupled hypernegative supercoiling of plasmid DNA by T7 RNA polymerase in Escherichia coli topoisomerase I-deficient strains. J Mol Biol (2007) 1.02
In vivo supercoiling of plasmid and chromosomal DNA in an Escherichia coli hns mutant. J Bacteriol (1997) 1.01
Internal structure and dynamics of isolated Escherichia coli nucleoids assessed by fluorescence correlation spectroscopy. Biophys J (2007) 0.98
Modulation of tyrT promoter activity by template supercoiling in vivo. EMBO J (1994) 0.95
Hypernegative supercoiling inhibits growth by causing RNA degradation. J Bacteriol (2008) 0.94
DNA axial rotation and the merge of oppositely supercoiled DNA domains in Escherichia coli: effects of DNA bends. Proc Natl Acad Sci U S A (2004) 0.94
Topological promoter coupling in Escherichia coli: delta topA-dependent activation of the leu-500 promoter on a plasmid. J Bacteriol (1994) 0.94
Role of RNA polymerase and transcription in the organization of the bacterial nucleoid. Chem Rev (2013) 0.92
Transcription-coupled DNA supercoiling dictates the chromosomal arrangement of bacterial genes. Nucleic Acids Res (2016) 0.90
Long-distance effect of downstream transcription on activity of the supercoiling-sensitive leu-500 promoter in a topA mutant of Salmonella typhimurium. J Bacteriol (1996) 0.89
Preponderance of Fis-binding sites in the R6K gamma origin and the curious effect of the penicillin resistance marker on replication of this origin in the absence of Fis. J Bacteriol (1996) 0.88
Phenotypic suppression of DNA gyrase deficiencies by a deletion lowering the gene dosage of a major tRNA in Salmonella typhimurium. J Bacteriol (1994) 0.86
In vitro transcription of a torsionally constrained template. Nucleic Acids Res (2002) 0.82
The RIB element in the goaG-pspF intergenic region of Escherichia coli. J Bacteriol (1997) 0.81
Hyper-negative template DNA supercoiling during transcription of the tetracycline-resistance gene in topA mutants is largely constrained in vivo. Nucleic Acids Res (1996) 0.81
Topological Behavior of Plasmid DNA. Microbiol Spectr (2015) 0.79
Mutational analysis of sequences in the recF gene of Escherichia coli K-12 that affect expression. J Bacteriol (1994) 0.78
The expression of a plasmid-specified exported protein causes structural plasmid instability in Bacillus subtilis. J Bacteriol (1996) 0.76
The regulatory role of DNA supercoiling in nucleoprotein complex assembly and genetic activity. Biophys Rev (2016) 0.75
Inter-sigmulon communication through topological promoter coupling. Nucleic Acids Res (2016) 0.75
Transient and dynamic DNA supercoiling potently stimulates the leu-500 promoter in Escherichia coli. J Biol Chem (2017) 0.75
Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid. J Bacteriol (1978) 75.38
Rapid transfer of DNA from agarose gels to nylon membranes. Nucleic Acids Res (1985) 21.05
Translational initiation in prokaryotes. Annu Rev Microbiol (1981) 18.46
A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli. Microbiol Rev (1989) 15.19
Supercoiling of the DNA template during transcription. Proc Natl Acad Sci U S A (1987) 14.25
Interaction between DNA and an Escherichia coli protein omega. J Mol Biol (1971) 11.03
Organization of transcriptional signals in plasmids pBR322 and pACYC184. Proc Natl Acad Sci U S A (1981) 8.77
ampC cephalosporinase of Escherichia coli K-12 has a different evolutionary origin from that of beta-lactamases of the penicillinase type. Proc Natl Acad Sci U S A (1981) 8.21
Plasmid vector pBR322 and its special-purpose derivatives--a review. Gene (1986) 6.52
Transcription generates positively and negatively supercoiled domains in the template. Cell (1988) 5.73
Chromosome partitioning in Escherichia coli: novel mutants producing anucleate cells. J Bacteriol (1989) 5.43
Escherichia coli DNA topoisomerase I mutants: increased supercoiling is corrected by mutations near gyrase genes. Cell (1982) 4.62
The enzymology of protein translocation across the Escherichia coli plasma membrane. Annu Rev Biochem (1991) 3.85
Genetic analysis of protein export in Escherichia coli. Annu Rev Genet (1990) 3.73
Energetics of B-to-Z transition in DNA. Proc Natl Acad Sci U S A (1983) 3.66
A topological model for transcription based on unwinding angle analysis of E. coli RNA polymerase binary, initiation and ternary complexes. Cell (1982) 3.58
Functional dissection of Escherichia coli promoters: information in the transcribed region is involved in late steps of the overall process. EMBO J (1986) 3.33
Translocation of domains of nascent periplasmic proteins across the cytoplasmic membrane is independent of elongation. Cell (1983) 3.09
Induction of RNA-stabilized DNA conformers by transcription of an immunoglobulin switch region. Nature (1990) 2.94
Different exported proteins in E. coli show differences in the temporal mode of processing in vivo. Cell (1981) 2.87
lac permease of Escherichia coli: topology and sequence elements promoting membrane insertion. Proc Natl Acad Sci U S A (1990) 2.76
Evidence for posttranslational translocation of beta-lactamase across the bacterial inner membrane. Cell (1982) 2.61
Positively supercoiled plasmid DNA is produced by treatment of Escherichia coli with DNA gyrase inhibitors. Nucleic Acids Res (1983) 2.47
Topoisomerase I mutants: the gene on pBR322 that encodes resistance to tetracycline affects plasmid DNA supercoiling. Proc Natl Acad Sci U S A (1986) 2.45
Improved yields of long PCR products using gene 32 protein. Nucleic Acids Res (1990) 2.43
DNA topoisomerase I mutants. Increased heterogeneity in linking number and other replicon-dependent changes in DNA supercoiling. J Mol Biol (1985) 2.40
Export of protein: a biochemical view. Annu Rev Microbiol (1987) 2.02
Insertion of proteins into bacterial membranes: mechanism, characteristics, and comparisons with the eucaryotic process. Microbiol Rev (1989) 1.99
PrlA (SecY) and PrlG (SecE) interact directly and function sequentially during protein translocation in E. coli. Cell (1990) 1.99
An improved method for sequencing of RNA templates. Nucleic Acids Res (1990) 1.99
Nucleotide sequence of the melB gene and characteristics of deduced amino acid sequence of the melibiose carrier in Escherichia coli. J Biol Chem (1984) 1.98
Intracellular location of the histonelike protein HU in Escherichia coli. J Bacteriol (1988) 1.75
In vivo expression of the lacY gene in two segments leads to functional lac permease. Proc Natl Acad Sci U S A (1990) 1.71
High efficiency electroporation of ligated DNA into bacteria. Nucleic Acids Res (1990) 1.65
Primary structure of the tolC gene that codes for an outer membrane protein of Escherichia coli K12. Nucleic Acids Res (1983) 1.65
In vivo analysis of integration of membrane proteins in Escherichia coli. Mol Microbiol (1991) 1.65
Formation of supercoiling domains in plasmid pBR322. J Bacteriol (1989) 1.62
A mechanism of formation of a persistent hybrid between elongating RNA and template DNA. Cell (1990) 1.59
Topology of the transposon Tn10-encoded tetracycline resistance protein within the inner membrane of Escherichia coli. J Biol Chem (1989) 1.52
Template supercoiling by a chimera of yeast GAL4 protein and phage T7 RNA polymerase. Science (1990) 1.41
DNA topoisomerases: nature's solution to the topological ramifications of the double-helix structure of DNA. Harvey Lect (1988) 1.32
An N-terminal domain of the tetracycline resistance protein increases susceptibility to aminoglycosides and complements potassium uptake defects in Escherichia coli. J Bacteriol (1988) 1.32
Metal-tetracycline/H+ antiporter of Escherichia coli encoded by transposon Tn10. Roles of the aspartyl residues located in the putative transmembrane helices. J Biol Chem (1992) 1.25
Dynamics of DNA supercoiling by transcription in Escherichia coli. Proc Natl Acad Sci U S A (1992) 1.23
Membrane topology of the melibiose carrier of Escherichia coli. J Biol Chem (1992) 1.15
Gyrase inhibitors can increase gyrA expression and DNA supercoiling. J Bacteriol (1989) 1.11
Nucleotide sequence of the tolC gene of Escherichia coli. Nucleic Acids Res (1990) 1.10
Truncated forms of Escherichia coli lactose permease: models for study of biosynthesis and membrane insertion. J Bacteriol (1988) 1.04
In the Escherichia coli lacZ gene the spacing between the translating ribosomes is insensitive to the efficiency of translation initiation. Nucleic Acids Res (1991) 1.00
The N-terminal region of Escherichia coli lactose permease mediates membrane contact of the nascent polypeptide chain. Eur J Biochem (1987) 0.96
In vitro membrane assembly of a polytopic, transmembrane protein results in an enzymatically active conformation. J Cell Biol (1989) 0.94
Overproduction and purification of the Tn10-specified inner membrane tetracycline resistance protein Tet using fusions to beta-galactosidase. Mol Microbiol (1990) 0.94
Histidine-94 is the only important histidine residue in the melibiose permease of Escherichia coli. Proc Natl Acad Sci U S A (1990) 0.86
Supercoiling of the DNA template during transcription. Proc Natl Acad Sci U S A (1987) 14.25
DNA topoisomerases. Annu Rev Biochem (1985) 13.01
Interaction between DNA and an Escherichia coli protein omega. J Mol Biol (1971) 11.03
Conformational fluctuations of DNA helix. Proc Natl Acad Sci U S A (1975) 8.72
DNA topoisomerase II is required at the time of mitosis in yeast. Cell (1985) 6.08
Helical repeat of DNA in solution. Proc Natl Acad Sci U S A (1979) 5.90
Transcription generates positively and negatively supercoiled domains in the template. Cell (1988) 5.73
Mutations in the gene coding for Escherichia coli DNA topoisomerase I affect transcription and transposition. Proc Natl Acad Sci U S A (1981) 5.60
The degree of unwinding of the DNA helix by ethidium. I. Titration of twisted PM2 DNA molecules in alkaline cesium chloride density gradients. J Mol Biol (1974) 5.44
Sequence dependence of the helical repeat of DNA in solution. Nature (1981) 5.21
Beta-catenin, a novel prognostic marker for breast cancer: its roles in cyclin D1 expression and cancer progression. Proc Natl Acad Sci U S A (2000) 4.71
Mapping the active site tyrosine of Escherichia coli DNA gyrase. J Biol Chem (1987) 4.68
Cloning and sequencing of the Escherichia coli gyrA gene coding for the A subunit of DNA gyrase. J Mol Biol (1987) 4.66
Structure and mechanism of DNA topoisomerase II. Nature (1996) 4.56
Micrococcus luteus DNA gyrase: active components and a model for its supercoiling of DNA. Proc Natl Acad Sci U S A (1978) 4.54
Variation of the average rotation angle of the DNA helix and the superhelical turns of covalently closed cyclic lambda DNA. J Mol Biol (1969) 4.48
Interactions between twisted DNAs and enzymes: the effects of superhelical turns. J Mol Biol (1974) 4.43
Identification of primitive human hematopoietic cells capable of repopulating NOD/SCID mouse bone marrow: implications for gene therapy. Nat Med (1996) 4.42
Flipping of cloned d(pCpG)n.d(pCpG)n DNA sequences from right- to left-handed helical structure by salt, Co(III), or negative supercoiling. Proc Natl Acad Sci U S A (1982) 4.35
Thermodynamic properties of superhelical DNAs. Biochemistry (1975) 4.20
Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling. J Mol Biol (1984) 4.03
Purification of primitive human hematopoietic cells capable of repopulating immune-deficient mice. Proc Natl Acad Sci U S A (1997) 3.84
On the probability of ring closure of lambda DNA. J Mol Biol (1966) 3.82
Negatively supercoiled plasmids contain left-handed Z-DNA segments as detected by specific antibody binding. Cell (1982) 3.80
Thermodynamic and kinetic studies on the interconversion between the linear and circular forms of phage lambda DNA. J Mol Biol (1966) 3.76
Energetics of B-to-Z transition in DNA. Proc Natl Acad Sci U S A (1983) 3.66
Interaction between DNA and Escherichia coli protein omega. Formation of a complex between single-stranded DNA and omega protein. J Biol Chem (1978) 3.35
Covalent bonds between protein and DNA. Formation of phosphotyrosine linkage between certain DNA topoisomerases and DNA. J Biol Chem (1980) 3.31
DNA supercoiling and its effects on DNA structure and function. Cold Spring Harb Symp Quant Biol (1983) 3.29
DNA topoisomerase-targeting antitumor drugs can be studied in yeast. Proc Natl Acad Sci U S A (1988) 3.10
Yeast DNA topoisomerase II is encoded by a single-copy, essential gene. Cell (1984) 2.80
Angular alteration of the DNA helix by E. coli RNA polymerase. Nat New Biol (1972) 2.75
Supercoiling of intracellular DNA can occur in eukaryotic cells. Cell (1988) 2.69
Cruciform formation in a negatively supercoiled DNA may be kinetically forbidden under physiological conditions. Cell (1983) 2.69
Drosophila DNA topoisomerase I is associated with transcriptionally active regions of the genome. Proc Natl Acad Sci U S A (1984) 2.69
Binding specificity determines polarity of DNA unwinding by the Sgs1 protein of S. cerevisiae. J Mol Biol (1999) 2.66
Recent studies of DNA topoisomerases. Biochim Biophys Acta (1987) 2.65
Topoisomerase I interacts with transcribed regions in Drosophila cells. Cell (1986) 2.65
DNA-DNA gyrase complex: the wrapping of the DNA duplex outside the enzyme. Cell (1978) 2.60
Deoxyribonucleic acid gyrase-deoxyribonucleic acid complex containing 140 base pairs of deoxyribonucleic acid and an alpha 2 beta 2 protein core. Biochemistry (1980) 2.59
On the sequence determinants and flexibility of the kinetoplast DNA fragment with abnormal gel electrophoretic mobilities. J Mol Biol (1985) 2.57
Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I. Nature (1994) 2.48
The capture of a DNA double helix by an ATP-dependent protein clamp: a key step in DNA transport by type II DNA topoisomerases. Cell (1992) 2.48
Knotting of a DNA chain during ring closure. Science (1993) 2.45
Use of light for footprinting DNA in vivo. Nature (1984) 2.42
Bacterial DNA topoisomerase I can relax positively supercoiled DNA containing a single-stranded loop. J Mol Biol (1985) 2.42
Mapping of single-stranded regions in duplex DNA at the sequence level: single-strand-specific cytosine methylation in RNA polymerase-promoter complexes. Proc Natl Acad Sci U S A (1983) 2.41
A subthreshold level of DNA topoisomerases leads to the excision of yeast rDNA as extrachromosomal rings. Cell (1989) 2.37
Mapping the topography of DNA wrapped around gyrase by nucleolytic and chemical probing of complexes of unique DNA sequences. Cell (1981) 2.36
Inducible overexpression, purification, and active site mapping of DNA topoisomerase II from the yeast Saccharomyces cerevisiae. J Biol Chem (1989) 2.33
Involvement of DNA topoisomerase I in transcription of human ribosomal RNA genes. Proc Natl Acad Sci U S A (1988) 2.29
Cloning and sequencing of cDNA encoding human DNA topoisomerase II and localization of the gene to chromosome region 17q21-22. Proc Natl Acad Sci U S A (1988) 2.26
On the degree of unwinding of the DNA helix by ethidium. II. Studies by electron microscopy. Biochim Biophys Acta (1975) 2.25
Cloning of yeast TOP1, the gene encoding DNA topoisomerase I, and construction of mutants defective in both DNA topoisomerase I and DNA topoisomerase II. Proc Natl Acad Sci U S A (1985) 2.21
Purification and characterization of the Sgs1 DNA helicase activity of Saccharomyces cerevisiae. J Biol Chem (1998) 2.20
Nonhistone proteins HMG1 and HMG2 change the DNA helical structure. Science (1978) 2.20
Interaction between yeast sgs1 helicase and DNA topoisomerase III. J Biol Chem (2000) 2.19
DNA topoisomerase IIbeta and neural development. Science (2000) 2.14
Effect of circularity and superhelicity on transcription from bacteriophagelambda DNA. Proc Natl Acad Sci U S A (1973) 2.13
An omega protein from Drosophila melanogaster. Biochemistry (1974) 2.12
Yeast DNA topoisomerase II. An ATP-dependent type II topoisomerase that catalyzes the catenation, decatenation, unknotting, and relaxation of double-stranded DNA rings. J Biol Chem (1982) 2.09
Role of Bacillus subtilis SpoIIIE in DNA transport across the mother cell-prespore division septum. Science (2000) 2.08
Degree of superhelicity of covalently closed cyclic DNA's from Escherichia coli. J Mol Biol (1969) 2.08
Physiochemical studies on interactions between DNA and RNA polymerase. Unwinding of the DNA helix by Escherichia coli RNA polymerase. Nucleic Acids Res (1977) 2.07
Knotted single-stranded DNA rings: a novel topological isomer of circular single-stranded DNA formed by treatment with Escherichia coli omega protein. J Mol Biol (1976) 2.05
ADH1B is associated with alcohol dependence and alcohol consumption in populations of European and African ancestry. Mol Psychiatry (2011) 2.05
DNA transport by a type II DNA topoisomerase: evidence in favor of a two-gate mechanism. Cell (1994) 2.04
Quantitative analysis reveals expansion of human hematopoietic repopulating cells after short-term ex vivo culture. J Exp Med (1997) 2.03
Transcriptional block caused by a negative supercoiling induced structural change in an alternating CG sequence. Cell (1985) 2.00
Measurements of unwinding of lac operator by repressor. Nature (1974) 1.98
Identification of the yeast TOP3 gene product as a single strand-specific DNA topoisomerase. J Biol Chem (1992) 1.97
Characterization of four novel epithelial ovarian cancer cell lines. In Vitro Cell Dev Biol Anim (2000) 1.91
Antitumor bisdioxopiperazines inhibit yeast DNA topoisomerase II by trapping the enzyme in the form of a closed protein clamp. Proc Natl Acad Sci U S A (1994) 1.84
Low lipid concentrations in critical illness: implications for preventing and treating endotoxemia. Crit Care Med (1996) 1.82
Intracellular S-adenosylhomocysteine concentrations predict global DNA hypomethylation in tissues of methyl-deficient cystathionine beta-synthase heterozygous mice. J Nutr (2001) 1.79
DNA transport by a type II topoisomerase: direct evidence for a two-gate mechanism. Proc Natl Acad Sci U S A (1996) 1.77
Complete nucleotide sequence of the topA gene encoding Escherichia coli DNA topoisomerase I. J Mol Biol (1986) 1.76
Mammalian DNA topoisomerase IIIalpha is essential in early embryogenesis. Proc Natl Acad Sci U S A (1998) 1.76
Assay of human stem cells by repopulation of NOD/SCID mice. Stem Cells (1997) 1.74
Expression of human DNA topoisomerase I in yeast cells lacking yeast DNA topoisomerase I: restoration of sensitivity of the cells to the antitumor drug camptothecin. Cancer Res (1989) 1.73
THE MEASUREMENT OF THE IODINE-ACCUMULATING FUNCTION OF THE HUMAN THYROID GLAND. J Clin Invest (1949) 1.72
The purification and characterization of DNA topoisomerases I and II of the yeast Saccharomyces cerevisiae. J Biol Chem (1984) 1.72
Hepatic nuclear factor 3- and hormone-regulated expression of the phosphoenolpyruvate carboxykinase and insulin-like growth factor-binding protein 1 genes. Mol Cell Biol (1995) 1.70
Function of DNA topoisomerases as replication swivels in Saccharomyces cerevisiae. J Mol Biol (1989) 1.65
SopB protein-mediated silencing of genes linked to the sopC locus of Escherichia coli F plasmid. Proc Natl Acad Sci U S A (1995) 1.64
Search for supersymmetry using final states with one lepton, jets, and missing transverse momentum with the ATLAS detector in √s=7 TeV pp collisions. Phys Rev Lett (2011) 1.60
Knotted DNA from bacteriophage capsids. Proc Natl Acad Sci U S A (1981) 1.59
On the coupling between ATP usage and DNA transport by yeast DNA topoisomerase II. J Biol Chem (1993) 1.56
Identification of intracellular calcium pools. Selective modification by thapsigargin. J Biol Chem (1991) 1.55
E. coli and M. luteus DNA topoisomerase I can catalyze catenation of decatenation of double-stranded DNA rings. Cell (1980) 1.54
In vivo localization of DNA topoisomerase II cleavage sites on Drosophila heat shock chromatin. Mol Cell Biol (1986) 1.52
Tandem regions of yeast DNA topoisomerase II share homology with different subunits of bacterial gyrase. Science (1986) 1.52
The 3'-terminal nucleotide sequences of lambda DNA. Biochem Biophys Res Commun (1973) 1.50
The complete nucleotide sequence of the structural gene TOP2 of yeast DNA topoisomerase II. J Biol Chem (1986) 1.48
Cyclization of coliphage 186 DNA. J Mol Biol (1967) 1.48
Cyclization of phage DNAs. Cold Spring Harb Symp Quant Biol (1968) 1.48
Amsacrine and etoposide hypersensitivity of yeast cells overexpressing DNA topoisomerase II. Cancer Res (1992) 1.47
Structural similarities between topoisomerases that cleave one or both DNA strands. Proc Natl Acad Sci U S A (1998) 1.47
Human TOP3: a single-copy gene encoding DNA topoisomerase III. Proc Natl Acad Sci U S A (1996) 1.46
Escherichia coli DNA topoisomerase I catalyzed linking of single-stranded rings of complementary base sequences. Nucleic Acids Res (1978) 1.46