Published in J Comput Biol on January 01, 1998
Protein sequence similarity searches using patterns as seeds. Nucleic Acids Res (1998) 23.87
PipMaker--a web server for aligning two genomic DNA sequences. Genome Res (2000) 17.46
Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST. BMC Biol (2006) 2.90
Evolutionary conservation of regulatory elements in vertebrate Hox gene clusters. Genome Res (2003) 2.64
YAHA: fast and flexible long-read alignment with optimal breakpoint detection. Bioinformatics (2012) 1.67
Repertoire and evolution of miRNA genes in four divergent nematode species. Genome Res (2009) 1.64
Differential impact of the HEN1 homolog HENN-1 on 21U and 26G RNAs in the germline of Caenorhabditis elegans. PLoS Genet (2012) 1.20
A deep sequencing approach to uncover the miRNOME in the human heart. PLoS One (2013) 1.04
STELLAR: fast and exact local alignments. BMC Bioinformatics (2011) 0.91
Split-alignment of genomes finds orthologies more accurately. Genome Biol (2015) 0.81
Cgaln: fast and space-efficient whole-genome alignment. BMC Bioinformatics (2010) 0.77
Training alignment parameters for arbitrary sequencers with LAST-TRAIN. Bioinformatics (2017) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Basic local alignment search tool. J Mol Biol (1990) 659.07
A greedy algorithm for aligning DNA sequences. J Comput Biol (2000) 47.89
Optimal alignments in linear space. Comput Appl Biosci (1988) 38.10
Protein sequence similarity searches using patterns as seeds. Nucleic Acids Res (1998) 23.87
The UCSC Genome Browser Database: 2008 update. Nucleic Acids Res (2007) 23.13
A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res (1998) 22.69
Aligning two sequences within a specified diagonal band. Comput Appl Biosci (1992) 19.31
PipMaker--a web server for aligning two genomic DNA sequences. Genome Res (2000) 17.46
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature (2001) 16.89
Comparative analyses of multi-species sequences from targeted genomic regions. Nature (2003) 13.31
Delineation of a region of the human immunodeficiency virus type 1 gp120 glycoprotein critical for interaction with the CD4 receptor. Cell (1987) 11.56
Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science (2000) 10.14
Long human-mouse sequence alignments reveal novel regulatory elements: a reason to sequence the mouse genome. Genome Res (1997) 8.49
Scoring pairwise genomic sequence alignments. Pac Symp Biocomput (2002) 8.42
Comparison of DNA sequences with protein sequences. Genomics (1997) 7.76
Mapping sequenced E.coli genes by computer: software, strategies and examples. Nucleic Acids Res (1991) 6.29
Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains. Genome Res (1997) 4.82
Alignment of Escherichia coli K12 DNA sequences to a genomic restriction map. Nucleic Acids Res (1990) 4.07
A controlled trial of a formalin-inactivated hepatitis A vaccine in healthy children. N Engl J Med (1992) 4.05
Comparative sequence analysis of a gene-rich cluster at human chromosome 12p13 and its syntenic region in mouse chromosome 6. Genome Res (1998) 3.80
Locus control regions of mammalian beta-globin gene clusters: combining phylogenetic analyses and experimental results to gain functional insights. Gene (1997) 3.77
The natural history of recurrent herpes simplex labialis: implications for antiviral therapy. N Engl J Med (1977) 3.61
A local alignment tool for very long DNA sequences. Comput Appl Biosci (1995) 3.58
Use of arsenic trioxide (As2O3) in the treatment of acute promyelocytic leukemia (APL): I. As2O3 exerts dose-dependent dual effects on APL cells. Blood (1997) 3.56
Analysis of host-virus interactions in AIDS with anti-gp120 T cell clones: effect of HIV sequence variation and a mechanism for CD4+ cell depletion. Cell (1988) 3.25
Post-processing long pairwise alignments. Bioinformatics (1999) 3.00
A space-efficient algorithm for local similarities. Comput Appl Biosci (1990) 2.98
Modulation of the two promoters of the galactose operon of Escherichia coli. Nature (1979) 2.91
Retail pharmacies in developing countries: a behavior and intervention framework. Soc Sci Med (1996) 2.91
Comparative analysis of the gene-dense ACHE/TFR2 region on human chromosome 7q22 with the orthologous region on mouse chromosome 5. Nucleic Acids Res (2001) 2.89
Polycystic ovaries treated by laparoscopic laser vaporization. Fertil Steril (1989) 2.77
Analysis of the quality and utility of random shotgun sequencing at low redundancies. Genome Res (1998) 2.74
Localization of epitopes of herpes simplex virus type 1 glycoprotein D. J Virol (1985) 2.71
Correlation of the highest-energy cosmic rays with nearby extragalactic objects. Science (2007) 2.57
Metabolism of (14C) cefaclor, a cephalosporin antibiotic, in three species of laboratory animals. Antimicrob Agents Chemother (1976) 2.52
Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the alpha globin cluster. Hum Mol Genet (2001) 2.46
Treatment of moderate/severe acute graft-versus-host disease after allogeneic bone marrow transplantation: an analysis of clinical risk features and outcome. Blood (1990) 2.38
Globin gene server: a prototype E-mail database server featuring extensive multiple alignments and data compilation for electronic genetic analysis. Genomics (1994) 2.36
Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions. Nucleic Acids Res (1999) 2.19
T cells can present antigens such as HIV gp120 targeted to their own surface molecules. Nature (1988) 2.15
Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi. Nucleic Acids Res (2000) 2.07
Recommendations from an international expert panel on the use of neoadjuvant (primary) systemic treatment of operable breast cancer: new perspectives 2006. Ann Oncol (2007) 2.05
Acute extrapyramidal syndrome in methylmalonic acidemia: "metabolic stroke" involving the globus pallidus. J Pediatr (1988) 2.00
Characterization of the human and mouse unconventional myosin XV genes responsible for hereditary deafness DFNB3 and shaker 2. Genomics (1999) 1.97
A tool for aligning very similar DNA sequences. Comput Appl Biosci (1997) 1.97
Comparative sequence of human and mouse BAC clones from the mnd2 region of chromosome 2p13. Genome Res (1999) 1.94
Targeted health insurance in a low income country and its impact on access and equity in access: Egypt's school health insurance. Health Econ (2001) 1.92
Diabetes mellitus: an underestimated public health program. J Chronic Dis (1975) 1.87
Sequence and comparative analysis of the mouse 1-megabase region orthologous to the human 11p15 imprinted domain. Genome Res (2000) 1.85
Chaining multiple-alignment blocks. J Comput Biol (1994) 1.75
Private health care provision in developing countries: a preliminary analysis of levels and composition. Health Policy Plan (1998) 1.75
Genome sequence comparisons: hurdles in the fast lane to functional genomics. Brief Bioinform (2000) 1.71
Accuracy of bedside chest hard-copy screen-film versus hard- and soft-copy computed radiographs in a medical intensive care unit: receiver operating characteristic analysis. Radiology (1997) 1.69
Software tools for analyzing pairwise alignments of long sequences. Nucleic Acids Res (1991) 1.68
Approximate matching of regular expressions. Bull Math Biol (1989) 1.68
Positive and negative regulatory elements of the rabbit embryonic epsilon-globin gene revealed by an improved multiple alignment program and functional analysis. DNA Seq (1993) 1.66
The Paced Auditory Serial Addition Task (PASAT): norms for age, education, and ethnicity. Assessment (1998) 1.65
Dynamic programming algorithms for biological sequence comparison. Methods Enzymol (1992) 1.65
Racism, society, and disease: an exploration of the social and biological mechanisms of differential mortality. Int J Health Serv (1981) 1.62
Evaluation of a method for clinically assessing osteoarthritis of the knee. Ann Rheum Dis (1992) 1.61
The use of adenosine deaminase assays in the diagnosis of tuberculosis. S Afr Med J (1982) 1.59
Conserved E boxes function as part of the enhancer in hypersensitive site 2 of the beta-globin locus control region. Role of basic helix-loop-helix proteins. J Biol Chem (1997) 1.58
Neutralization of a clade B primary isolate by sera from human immunodeficiency virus-uninfected recipients of candidate AIDS vaccines. J Infect Dis (1997) 1.57
Improved mortality among U.S. Blacks, 1968-1978: the role of antiracist struggle. Int J Health Serv (1981) 1.53
Recent developments in linear-space alignment methods: a survey. J Comput Biol (1994) 1.49
Measurement of the depth of maximum of extensive air showers above 10{18} eV. Phys Rev Lett (2010) 1.48
A randomized trial comparing prednisone with antithymocyte globulin/prednisone as an initial systemic therapy for moderately severe acute graft-versus-host disease. Biol Blood Marrow Transplant (2000) 1.48
Maternal serum screening for alpha-fetoprotein, unconjugated estriol, and human chorionic gonadotropin between 11 and 15 weeks of pregnancy to detect fetal chromosome abnormalities. Am J Obstet Gynecol (1993) 1.44
Septic arthritis complicating apatite associated destructive arthropathy. Ann Rheum Dis (1990) 1.41
Cytomegalovirus infection after bone marrow transplantation: an association with acute graft-v-host disease. Blood (1986) 1.40
QS-21 promotes an adjuvant effect allowing for reduced antigen dose during HIV-1 envelope subunit immunization in humans. Vaccine (2001) 1.35
Characterization of GP120 binding to CD4 and an assay that measures ability of sera to inhibit this binding. J Immunol (1988) 1.34
Hox cluster genomics in the horn shark, Heterodontus francisci. Proc Natl Acad Sci U S A (2000) 1.32
A hospital study of community acquired pneumonia in the elderly. Thorax (1990) 1.32
Paraneoplastic autoimmune phenomena in patients with myelodysplastic syndromes: response to immunosuppressive therapy. Br J Haematol (1995) 1.31
Association between divergence and interspersed repeats in mammalian noncoding genomic DNA. Proc Natl Acad Sci U S A (2001) 1.31
Age bias, but no gender bias, in the intra-household resource allocation for health care in rural Burkina Faso. Health Transit Rev (1996) 1.30
Risk factors for acute graft-versus-host disease in histocompatible donor bone marrow transplantation. Transplantation (1991) 1.30
Cost analysis as a management tool for improving the efficiency of primary care: some examples from Java. Int J Health Plann Manage (1987) 1.29
Role of DNA sequences outside the cores of DNase hypersensitive sites (HSs) in functions of the beta-globin locus control region. Domain opening and synergism between HS2 and HS3. J Biol Chem (1996) 1.29
Urinary sodium excretion and blood pressure in children: absence of a reproducible association. Hypertension (1983) 1.27
Web-based visualization tools for bacterial genome alignments. Nucleic Acids Res (2000) 1.24
Comparative sequence analysis of the mouse and human Lgn1/SMA interval. Genomics (1999) 1.23
Bacteremia, central catheters, and neonates: when to pull the line. Pediatrics (2001) 1.21
Autoimmune phenomena in patients with myelodysplastic syndromes. Leuk Lymphoma (1997) 1.20
Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes. Proc Natl Acad Sci U S A (2000) 1.19
Financing health services in Poland: new evidence on private expenditures. Health Econ (1998) 1.19
The gene mutated in bare patches and striated mice encodes a novel 3beta-hydroxysteroid dehydrogenase. Nat Genet (1999) 1.18
Use of long sequence alignments to study the evolution and regulation of mammalian globin gene clusters. Mol Biol Evol (1993) 1.17
Diagnostic value of ascites adenosine deaminase in tuberculous peritonitis. Lancet (1989) 1.16
Locating well-conserved regions within a pairwise alignment. Comput Appl Biosci (1993) 1.16
Sequence conservation at human and mouse orthologous common fragile regions, FRA3B/FHIT and Fra14A2/Fhit. Proc Natl Acad Sci U S A (2001) 1.15
Induction of HIV-1-neutralising and syncytium-inhibiting antibodies in uninfected recipients of HIV-1IIIB rgp120 subunit vaccine. Lancet (1993) 1.15
Sequence comparison with concave weighting functions. Bull Math Biol (1988) 1.14
A negative cis-element regulates the level of enhancement by hypersensitive site 2 of the beta-globin locus control region. J Biol Chem (2000) 1.14