Published in Genome Res on June 01, 2002
The DNA sequence of the human X chromosome. Nature (2005) 6.97
Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome. Genes Dev (2009) 4.20
YY1 tethers Xist RNA to the inactive X nucleation center. Cell (2011) 4.06
The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation. Cell (2010) 3.18
Long noncoding RNAs: past, present, and future. Genetics (2013) 3.16
Jpx RNA activates Xist by evicting CTCF. Cell (2013) 2.56
Noncoding sequences conserved in a limited number of mammals in the SIM2 interval are frequently functional. Genome Res (2004) 2.32
Transposon-free regions in mammalian genomes. Genome Res (2005) 1.75
Higher order chromatin structure at the X-inactivation center via looping DNA. Dev Biol (2008) 1.68
Gracefully ageing at 50, X-chromosome inactivation becomes a paradigm for RNA and chromatin control. Nat Rev Mol Cell Biol (2011) 1.66
A novel RNA transcript with antiapoptotic function is silenced in fragile X syndrome. PLoS One (2008) 1.57
The X as model for RNA's niche in epigenomic regulation. Cold Spring Harb Perspect Biol (2010) 1.43
Progress and prospects toward our understanding of the evolution of dosage compensation. Chromosome Res (2009) 1.40
Mapping of Replication Origins in the X Inactivation Center of Vole Microtus levis Reveals Extended Replication Initiation Zone. PLoS One (2015) 1.39
Tsx produces a long noncoding RNA and has general functions in the germline, stem cells, and brain. PLoS Genet (2011) 1.37
A new model for random X chromosome inactivation. Development (2008) 1.35
The region 3' to Xist mediates X chromosome counting and H3 Lys-4 dimethylation within the Xist gene. EMBO J (2004) 1.31
Comparative sequence and x-inactivation analyses of a domain of escape in human xp11.2 and the conserved segment in mouse. Genome Res (2004) 1.29
Xist regulation and function explored. Hum Genet (2011) 1.28
The region homologous to the X-chromosome inactivation centre has been disrupted in marsupial and monotreme mammals. Chromosome Res (2007) 1.27
A genomic analysis of rat proteases and protease inhibitors. Genome Res (2004) 1.27
Molecular signatures of human induced pluripotent stem cells highlight sex differences and cancer genes. Cell Stem Cell (2012) 1.23
A dual origin of the Xist gene from a protein-coding gene and a set of transposable elements. PLoS One (2008) 1.23
Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species. Cell Rep (2015) 1.22
Word frequency analysis reveals enrichment of dinucleotide repeats on the human X chromosome and [GATA]n in the X escape region. Genome Res (2006) 1.20
A boundary element between Tsix and Xist binds the chromatin insulator Ctcf and contributes to initiation of X-chromosome inactivation. Genetics (2011) 1.20
Evolutionary diversity and developmental regulation of X-chromosome inactivation. Hum Genet (2011) 1.20
Ubiquitinated proteins including uH2A on the human and mouse inactive X chromosome: enrichment in gene rich bands. Chromosoma (2004) 1.20
X-inactivation and X-reactivation: epigenetic hallmarks of mammalian reproduction and pluripotent stem cells. Hum Genet (2011) 1.14
X chromosome choice occurs independently of asynchronous replication timing. J Cell Biol (2005) 1.14
Inducible XIST-dependent X-chromosome inactivation in human somatic cells is reversible. Proc Natl Acad Sci U S A (2007) 1.09
Skewing X chromosome choice by modulating sense transcription across the Xist locus. Genes Dev (2003) 1.09
The demoiselle of X-inactivation: 50 years old and as trendy and mesmerising as ever. PLoS Genet (2011) 1.08
The genomic distribution of L1 elements: the role of insertion bias and natural selection. J Biomed Biotechnol (2006) 1.08
Genes flanking Xist in mouse and human are separated on the X chromosome in American marsupials. Chromosome Res (2007) 1.07
The search for a marsupial XIC reveals a break with vertebrate synteny. Chromosome Res (2007) 1.06
X-chromosome inactivation: molecular mechanisms from the human perspective. Hum Genet (2011) 1.03
Lessons from comparative analysis of X-chromosome inactivation in mammals. Chromosome Res (2009) 1.03
Conservation of genomic imprinting at the XIST, IGF2, and GTL2 loci in the bovine. Mamm Genome (2004) 1.02
Evolution from XIST-independent to XIST-controlled X-chromosome inactivation: epigenetic modifications in distantly related mammals. PLoS One (2011) 1.01
X-chromosome inactivation in rett syndrome human induced pluripotent stem cells. Front Psychiatry (2012) 0.97
Specific patterns of histone marks accompany X chromosome inactivation in a marsupial. Chromosome Res (2009) 0.97
A role for non-coding Tsix transcription in partitioning chromatin domains within the mouse X-inactivation centre. Epigenetics Chromatin (2009) 0.97
X-chromosome epigenetic reprogramming in pluripotent stem cells via noncoding genes. Semin Cell Dev Biol (2011) 0.96
XIST RNA and architecture of the inactive X chromosome: implications for the repeat genome. Cold Spring Harb Symp Quant Biol (2011) 0.94
Long noncoding RNA FTX inhibits hepatocellular carcinoma proliferation and metastasis by binding MCM2 and miR-374a. Oncogene (2016) 0.93
The pluripotency factor-bound intron 1 of Xist is dispensable for X chromosome inactivation and reactivation in vitro and in vivo. Cell Rep (2013) 0.92
Emerging epigenetic mechanisms of long non-coding RNAs. Neuroscience (2013) 0.91
Computational prediction of associations between long non-coding RNAs and proteins. BMC Genomics (2013) 0.90
Nap1l2 promotes histone acetylation activity during neuronal differentiation. Mol Cell Biol (2007) 0.90
Analysis of transposon interruptions suggests selection for L1 elements on the X chromosome. PLoS Genet (2008) 0.89
A statistical framework to predict functional non-coding regions in the human genome through integrated analysis of annotation data. Sci Rep (2015) 0.87
Mapping of DNA replication origins to noncoding genes of the X-inactivation center. Mol Cell Biol (2006) 0.87
X chromosome inactivation and Xist evolution in a rodent lacking LINE-1 activity. PLoS One (2009) 0.86
Isolation, X location and activity of the marsupial homologue of SLC16A2, an XIST-flanking gene in eutherian mammals. Chromosome Res (2005) 0.86
XCI in preimplantation mouse and human embryos: first there is remodelling…. Hum Genet (2011) 0.85
Coupling of X-chromosome reactivation with the pluripotent stem cell state. RNA Biol (2014) 0.84
Over-expression of XIST, the Master Gene for X Chromosome Inactivation, in Females With Major Affective Disorders. EBioMedicine (2015) 0.84
The single active X in human cells: evolutionary tinkering personified. Hum Genet (2011) 0.83
Variability of sequence surrounding the Xist gene in rodents suggests taxon-specific regulation of X chromosome inactivation. PLoS One (2011) 0.82
Differentially methylated CpG island within human XIST mediates alternative P2 transcription and YY1 binding. BMC Genet (2014) 0.82
Dynamic interplay and function of multiple noncoding genes governing X chromosome inactivation. Biochim Biophys Acta (2015) 0.82
Molecular basis of Mammalian embryonic stem cell pluripotency and self-renewal. Acta Naturae (2010) 0.81
Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus. Genome Res (2011) 0.80
The X chromosome in space. Nat Rev Genet (2017) 0.79
Functional constraint and divergence in the G protein family in Caenorhabditis elegans and Caenorhabditis briggsae. Mol Genet Genomics (2005) 0.79
Expression of XIST sense and antisense in bovine fetal organs and cell cultures. Chromosome Res (2004) 0.79
Identification of regulatory elements flanking human XIST reveals species differences. BMC Mol Biol (2010) 0.78
The evolutionary pathway of x chromosome inactivation in mammals. Acta Naturae (2013) 0.78
Antagonist Xist and Tsix co-transcription during mouse oogenesis and maternal Xist expression during pre-implantation development calls into question the nature of the maternal imprint on the X chromosome. Epigenetics (2015) 0.78
Identification of novel exons from rat-mouse comparisons. J Mol Evol (2004) 0.78
Epigenetics of pluripotent cells. Acta Naturae (2012) 0.78
Structure Prediction: New Insights into Decrypting Long Noncoding RNAs. Int J Mol Sci (2016) 0.77
Functional intergenic transcription: a case study of the X-inactivation centre. Philos Trans R Soc Lond B Biol Sci (2003) 0.76
CANT1 lncRNA Triggers Efficient Therapeutic Efficacy by Correcting Aberrant lncing Cascade in Malignant Uveal Melanoma. Mol Ther (2017) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Initial sequencing and analysis of the human genome. Nature (2001) 212.86
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res (1997) 142.55
Genomic sequencing. Proc Natl Acad Sci U S A (1984) 92.36
Prediction of complete gene structures in human genomic DNA. J Mol Biol (1997) 58.76
A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res (1998) 22.69
Repbase update: a database and an electronic journal of repetitive elements. Trends Genet (2000) 16.94
Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr Opin Genet Dev (1999) 14.64
Evolutionary parameters of the transcribed mammalian genome: an analysis of 2,820 orthologous rodent and human sequences. Proc Natl Acad Sci U S A (1998) 11.90
PairWise and SearchWise: finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames. Nucleic Acids Res (1996) 9.82
Human and mouse gene structure: comparative analysis and application to exon prediction. Genome Res (2000) 8.28
Requirement for Xist in X chromosome inactivation. Nature (1996) 8.24
A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome. Nature (1991) 8.22
The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus. Cell (1992) 8.05
Tsix, a gene antisense to Xist at the X-inactivation centre. Nat Genet (1999) 6.77
The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus. Cell (1992) 6.26
An abundance of X-linked genes expressed in spermatogonia. Nat Genet (2001) 5.87
Genomic strategies to identify mammalian regulatory sequences. Nat Rev Genet (2001) 5.78
Xist-deficient mice are defective in dosage compensation but not spermatogenesis. Genes Dev (1997) 4.90
Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs. Genome Res (1999) 4.50
A shift from reversible to irreversible X inactivation is triggered during ES cell differentiation. Mol Cell (2000) 4.26
Methylation of histone H3 at Lys-9 is an early mark on the X chromosome during X inactivation. Cell (2001) 4.21
Targeted mutagenesis of Tsix leads to nonrandom X inactivation. Cell (1999) 4.08
Transposable elements are found in a large number of human protein-coding genes. Trends Genet (2001) 3.89
Comparative sequence analysis of a gene-rich cluster at human chromosome 12p13 and its syntenic region in mouse chromosome 6. Genome Res (1998) 3.80
X-chromosome inactivation: counting, choice and initiation. Nat Rev Genet (2001) 3.75
X-chromosome inactivation in mammals. Annu Rev Genet (1997) 3.50
Conservation of position and exclusive expression of mouse Xist from the inactive X chromosome. Nature (1991) 3.43
Searching for regulatory elements in human noncoding sequences. Curr Opin Struct Biol (1997) 3.30
Characterization of a murine gene expressed from the inactive X chromosome. Nature (1991) 3.21
Regulation of imprinted X-chromosome inactivation in mice by Tsix. Development (2001) 3.12
Stabilization of Xist RNA mediates initiation of X chromosome inactivation. Cell (1997) 3.00
Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: the Lyon repeat hypothesis. Proc Natl Acad Sci U S A (2000) 2.94
Selective constraint in intergenic regions of human and mouse genomes. Trends Genet (2001) 2.87
X-chromosome inactivation: a repeat hypothesis. Cytogenet Cell Genet (1998) 2.82
Xist has properties of the X-chromosome inactivation centre. Nature (1997) 2.78
Deletion of a coordinate regulator of type 2 cytokine expression in mice. Nat Immunol (2001) 2.62
Long-range cis effects of ectopic X-inactivation centres on a mouse autosome. Nature (1997) 2.62
Localization of the X inactivation centre on the human X chromosome in Xq13. Nature (1991) 2.48
Strong conservation of non-coding sequences during vertebrates evolution: potential involvement in post-transcriptional regulation of gene expression. Nucleic Acids Res (1993) 2.39
Role of the region 3' to Xist exon 6 in the counting process of X-chromosome inactivation. Nat Genet (1998) 2.39
Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores. J Mol Evol (1995) 2.37
Nature and structure of human genes that generate retropseudogenes. Genome Res (2000) 2.21
Disruption of imprinted X inactivation by parent-of-origin effects at Tsix. Cell (2000) 2.19
Cloning and sequencing of four new mammalian monocarboxylate transporter (MCT) homologues confirms the existence of a transporter family with an ancient past. Biochem J (1998) 2.18
Evolutionary strategies for the elucidation of cis and trans factors that regulate the developmental switching programs of the beta-like globin genes. Mol Phylogenet Evol (1996) 2.17
Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome. Proc Natl Acad Sci U S A (2001) 2.14
Determinants of CpG islands: expression in early embryo and isochore structure. Genome Res (2001) 2.07
Chromosomal location effects on gene sequence evolution in mammals. Curr Biol (1999) 2.02
Comparative sequence of human and mouse BAC clones from the mnd2 region of chromosome 2p13. Genome Res (1999) 1.94
Non-random X-chromosome inactivation in mouse X-autosome translocation embryos--location of the inactivation centre. J Embryol Exp Morphol (1983) 1.93
Xist yeast artificial chromosome transgenes function as X-inactivation centers only in multicopy arrays and not as single copies. Mol Cell Biol (1999) 1.90
LALNVIEW: a graphical viewer for pairwise sequence alignments. Comput Appl Biosci (1996) 1.83
Forty years of decoding the silence in X-chromosome inactivation. Hum Mol Genet (2001) 1.63
A functional role for Tsix transcription in blocking Xist RNA accumulation but not in X-chromosome choice. Proc Natl Acad Sci U S A (2001) 1.62
Identification of a gene that reverses the immortal phenotype of a subset of cells and is a member of a novel family of transcription factor-like genes. Mol Cell Biol (1999) 1.57
Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence. Genome Res (2001) 1.54
Murine Cdx-4 bears striking similarities to the Drosophila caudal gene in its homeodomain sequence and early expression pattern. Mech Dev (1993) 1.54
Functional analysis of the DXPas34 locus, a 3' regulator of Xist expression. Mol Cell Biol (1999) 1.48
Evolutionary rate of a gene affected by chromosomal position. Curr Biol (1999) 1.47
Epigenetic aspects of X-chromosome dosage compensation. Science (2001) 1.46
Mapping the murine Xce locus with (CA)n repeats. Mamm Genome (1993) 1.41
Comparative sequence analysis of the imprinted Dlk1-Gtl2 locus in three mammalian species reveals highly conserved genomic elements and refines comparison with the Igf2-H19 region. Genome Res (2001) 1.41
Evidence of non-random X chromosome activity in the mouse. Genet Res (1972) 1.39
Xce haplotypes show modified methylation in a region of the active X chromosome lying 3' to Xist. Proc Natl Acad Sci U S A (1995) 1.37
A novel transmembrane transporter encoded by the XPCT gene in Xq13.2. Hum Mol Genet (1994) 1.31
Identification of TSIX, encoding an RNA antisense to human XIST, reveals differences from its murine counterpart: implications for X inactivation. Am J Hum Genet (2001) 1.26
A new structure for the murine Xist gene and its relationship to chromosome choice/counting during X-chromosome inactivation. Proc Natl Acad Sci U S A (1999) 1.25
Tsix-mediated repression of Xist accumulation is not sufficient for normal random X inactivation. Hum Mol Genet (2001) 1.19
A 94 kb genomic sequence 3' to the murine Xist gene reveals an AT rich region containing a new testis specific gene Tsx. Hum Mol Genet (1996) 1.16
Comparative genome sequence analysis of the Bpa/Str region in mouse and Man. Genome Res (2000) 1.13
A revision of the human XIST gene organization and structural comparison with mouse Xist. Mamm Genome (2000) 1.13
LINE-1 elements and X chromosome inactivation: a function for "junk" DNA? Proc Natl Acad Sci U S A (2000) 1.09
Molecular cloning of antisense transcripts of the mouse Xist gene. Biochem Biophys Res Commun (1999) 1.06
Cloning and localization of the murine Xpct gene: evidence for complex rearrangements during the evolution of the region around the Xist gene. Genomics (1998) 1.05
Shotgun sample sequence comparisons between mouse and human genomes. Nat Genet (2000) 1.04
Allelic IGF2R repression does not correlate with expression of antisense RNA in human extraembryonic tissues. Genomics (2001) 1.02
Methylation profiles of DXPas34 during the onset of X-inactivation. Hum Mol Genet (2001) 0.99
Control of neurulation by the nucleosome assembly protein-1-like 2. Nat Genet (2000) 0.98
The search for the mouse X-chromosome inactivation centre. Genet Res (1991) 0.97
Heterogeneous X inactivation in trophoblastic cells of human full-term female placentas. Am J Hum Genet (1999) 0.94
X inactive-specific transcript (Xist) expression and X chromosome inactivation in the preattachment bovine embryo. Biol Reprod (1999) 0.93
The mouse Tsx gene is expressed in Sertoli cells of the adult testis and transiently in premeiotic germ cells during puberty. Dev Biol (1998) 0.88
Localization and expression analysis of a novel conserved brain expressed transcript, Brx/BRX, lying within the Xic/XIC candidate region. Mamm Genome (1997) 0.86
Cloning and characterization of a murine brain specific gene Bpx and its human homologue lying within the Xic candidate region. Hum Mol Genet (1996) 0.83
cDNA cloning and developmental expression of cellular nucleic acid-binding protein (CNBP) gene in Xenopus laevis. Gene (2000) 0.81
Comparative genomics and evolutionary biology. Curr Opin Genet Dev (1999) 0.80
MaGe: a microbial genome annotation system supported by synteny results. Nucleic Acids Res (2006) 12.48
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature (2004) 11.03
Genome evolution in yeasts. Nature (2004) 10.50
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet (2009) 8.51
The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (2009) 8.23
Comparative genomics of multidrug resistance in Acinetobacter baumannii. PLoS Genet (2006) 6.32
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature (2006) 5.06
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature (2011) 4.94
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. Nucleic Acids Res (2005) 4.15
Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature (2006) 4.06
The nature and identification of quantitative trait loci: a community's view. Nat Rev Genet (2003) 3.96
Comparative analysis of Acinetobacters: three genomes for three lifestyles. PLoS One (2008) 3.94
LINE-1 activity in facultative heterochromatin formation during X chromosome inactivation. Cell (2010) 3.70
Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation. Nat Cell Biol (2006) 3.66
Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases. Bioinformatics (2005) 3.62
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci U S A (2003) 3.55
Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus. PLoS One (2009) 3.53
Recombination drives the evolution of GC-content in the human genome. Mol Biol Evol (2004) 3.50
The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene. Science (2006) 3.50
Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia. Science (2007) 3.42
A review on SNP and other types of molecular markers and their use in animal genetics. Genet Sel Evol (2002) 3.22
Genome sequences of Escherichia coli B strains REL606 and BL21(DE3). J Mol Biol (2009) 3.10
Imprinted X-inactivation in extra-embryonic endoderm cell lines from mouse blastocysts. Development (2005) 2.91
Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125. Genome Res (2005) 2.89
Genome-wide studies highlight indirect links between human replication origins and gene regulation. Proc Natl Acad Sci U S A (2008) 2.77
An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi. Mol Microbiol (2003) 2.75
Molecular coupling of Xist regulation and pluripotency. Science (2008) 2.74
Evidence for de novo imprinted X-chromosome inactivation independent of meiotic inactivation in mice. Nature (2005) 2.46
Differential histone H3 Lys-9 and Lys-27 methylation profiles on the X chromosome. Mol Cell Biol (2004) 2.43
Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila. Nat Biotechnol (2006) 2.41
Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops). Plant Cell (2005) 2.40
2-D structure of the A region of Xist RNA and its implication for PRC2 association. PLoS Biol (2010) 2.30
High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies. BMC Genomics (2008) 2.21
The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution. PLoS Genet (2010) 2.20
Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution. Trends Genet (2007) 2.18
Genetic and haplotypic structure in 14 European and African cattle breeds. Genetics (2007) 2.18
Translational control of intron splicing in eukaryotes. Nature (2008) 2.15
Neutral effect of recombination on base composition in Drosophila. Genet Res (2003) 2.11
Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome. PLoS Genet (2007) 2.08
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations. Nat Commun (2011) 2.03
The DNA sequence and analysis of human chromosome 14. Nature (2003) 2.02
Databases of homologous gene families for comparative genomics. BMC Bioinformatics (2009) 2.01
The endogenous retroviral locus ERVWE1 is a bona fide gene involved in hominoid placental physiology. Proc Natl Acad Sci U S A (2004) 1.98
Comparative genomics of protoploid Saccharomycetaceae. Genome Res (2009) 1.96
Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. PLoS One (2009) 1.94
Tsix transcription across the Xist gene alters chromatin conformation without affecting Xist transcription: implications for X-chromosome inactivation. Genes Dev (2005) 1.92
Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptide-repeat protein family. EMBO Rep (2003) 1.87
The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes. Genome Res (2013) 1.83
Genome-scale coestimation of species and gene trees. Genome Res (2012) 1.82
Large scale genotype comparison of human papillomavirus E2-host interaction networks provides new insights for e2 molecular functions. PLoS Pathog (2012) 1.79
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga. Nature (2013) 1.76
Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence. BMC Genomics (2010) 1.75
Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia. Genome Res (2008) 1.71
The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae. BMC Genomics (2009) 1.71
Molecular coupling of Tsix regulation and pluripotency. Nature (2010) 1.69
Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis. Nat Genet (2013) 1.67
Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups. Emerg Infect Dis (2014) 1.65
Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes. PLoS Genet (2011) 1.63
Evolutionary origin and maintenance of coexpressed gene clusters in mammals. Mol Biol Evol (2006) 1.62
Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas. PLoS Genet (2009) 1.61
A tale of two oxidation states: bacterial colonization of arsenic-rich environments. PLoS Genet (2007) 1.59
Design of a bovine low-density SNP array optimized for imputation. PLoS One (2012) 1.59
A physical map of the bovine genome. Genome Biol (2007) 1.56
GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates. Trends Genet (2008) 1.54
ROSO: optimizing oligonucleotide probes for microarrays. Bioinformatics (2004) 1.53
Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region. Hum Mol Genet (2010) 1.53
The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model. Infect Immun (2009) 1.53
Ralstonia syzygii, the Blood Disease Bacterium and some Asian R. solanacearum strains form a single genomic species despite divergent lifestyles. PLoS One (2011) 1.50
Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti. PLoS Genet (2009) 1.50
Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti. Nucleic Acids Res (2012) 1.49
Genome sequence of a polydnavirus: insights into symbiotic virus evolution. Science (2004) 1.49
Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments. PLoS Genet (2011) 1.45
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes. Genome Res (2008) 1.45
Benchmarking a luciferase complementation assay for detecting protein complexes. Nat Methods (2011) 1.44
Evolution of the terminal regions of the Streptomyces linear chromosome. Mol Biol Evol (2006) 1.41
Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity. BMC Genomics (2010) 1.41
The parental non-equivalence of imprinting control regions during mammalian development and evolution. PLoS Genet (2010) 1.41
Ultra-fast sequence clustering from similarity networks with SiLiX. BMC Bioinformatics (2011) 1.40
HOPPSIGEN: a database of human and mouse processed pseudogenes. Nucleic Acids Res (2005) 1.38
The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences. PLoS Genet (2012) 1.38
Fine mapping of quantitative trait loci affecting female fertility in dairy cattle on BTA03 using a dense single-nucleotide polymorphism map. Genetics (2008) 1.36
The rhizome of the multidrug-resistant Enterobacter aerogenes genome reveals how new "killer bugs" are created because of a sympatric lifestyle. Mol Biol Evol (2012) 1.34
Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance. Hum Mol Genet (2004) 1.33
No evidence for tissue-specific adaptation of synonymous codon usage in humans. Mol Biol Evol (2005) 1.32
Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes. Proc Natl Acad Sci U S A (2013) 1.32
The region 3' to Xist mediates X chromosome counting and H3 Lys-4 dimethylation within the Xist gene. EMBO J (2004) 1.31
A bovine whole-genome radiation hybrid panel and outline map. Mamm Genome (2002) 1.31
Tsix-mediated epigenetic switch of a CTCF-flanked region of the Xist promoter determines the Xist transcription program. Genes Dev (2006) 1.29
The decline of isochores in mammals: an assessment of the GC content variation along the mammalian phylogeny. J Mol Evol (2004) 1.28
The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications. PLoS One (2010) 1.28
Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean. Environ Microbiol (2011) 1.28
An essential role for the DXPas34 tandem repeat and Tsix transcription in the counting process of X chromosome inactivation. Proc Natl Acad Sci U S A (2006) 1.28
Identification and characterization of human Mex-3 proteins, a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies. Nucleic Acids Res (2007) 1.28
Structure, function, and evolution of the Thiomonas spp. genome. PLoS Genet (2010) 1.27
Lost in the middle of nowhere: the AvrLm1 avirulence gene of the Dothideomycete Leptosphaeria maculans. Mol Microbiol (2006) 1.26